Wall clock time and date at job start Mon Mar 30 2020 04:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86799 * 120.00233 * 2 1 4 4 H 1.48501 * 109.46906 * 269.99926 * 3 2 1 5 5 H 1.48502 * 109.47369 * 29.99550 * 3 2 1 6 6 H 1.48497 * 109.47367 * 149.99996 * 3 2 1 7 7 C 1.39862 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00341 * 163.04112 * 7 2 1 9 9 C 1.41142 * 119.99914 * 343.03868 * 7 2 1 10 10 C 1.40880 * 120.15394 * 154.55152 * 9 7 2 11 11 C 1.36341 * 119.83501 * 179.97438 * 10 9 7 12 12 C 1.39563 * 120.16091 * 359.97438 * 11 10 9 13 13 N 1.38853 * 119.84408 * 179.97438 * 12 11 10 14 14 C 1.46497 * 120.00167 * 0.02562 * 13 12 11 15 15 H 1.08999 * 110.43533 * 323.91387 * 14 13 12 16 16 C 1.54105 * 110.48744 * 86.45157 * 14 13 12 17 17 O 1.43746 * 107.28955 * 116.64955 * 16 14 13 18 18 C 1.44375 * 106.97728 * 26.51915 * 17 16 14 19 19 C 1.54809 * 110.49464 * 201.22350 * 14 13 12 20 20 H 1.08997 * 110.90347 * 338.64339 * 19 14 13 21 21 O 1.42902 * 110.90716 * 102.24464 * 19 14 13 22 22 C 1.39568 * 120.31761 * 0.02562 * 12 11 10 23 23 C 1.36341 * 120.15751 * 359.97438 * 22 12 11 24 24 H 0.97004 * 119.99806 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.08691 * 359.70175 * 10 9 7 26 26 H 1.07999 * 119.91802 * 179.97438 * 11 10 9 27 27 H 0.97002 * 119.99997 * 180.02562 * 13 12 11 28 28 H 1.08996 * 109.88633 * 236.07657 * 16 14 13 29 29 H 1.09002 * 109.87424 * 357.08370 * 16 14 13 30 30 H 1.09000 * 110.62132 * 78.43821 * 18 17 16 31 31 H 1.09002 * 110.61718 * 201.28254 * 18 17 16 32 32 H 0.96698 * 113.99539 * 180.02562 * 21 19 14 33 33 H 1.07999 * 119.92515 * 180.02562 * 22 12 11 34 34 H 1.08001 * 120.07772 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0463 -1.4001 5 1 1.4406 2.6527 0.6999 6 1 3.5406 1.4401 0.7000 7 6 2.0083 -1.2112 0.0005 8 1 3.0531 -1.2318 -0.2723 9 6 1.3486 -2.4068 0.3577 10 6 1.8175 -3.6449 -0.1241 11 6 1.1756 -4.7958 0.2254 12 6 0.0570 -4.7496 1.0587 13 7 -0.5920 -5.9257 1.4101 14 6 -0.1020 -7.2113 0.9067 15 1 0.2738 -7.1034 -0.1107 16 6 0.9975 -7.7688 1.8314 17 8 0.5058 -9.0007 2.3854 18 6 -0.4513 -9.5335 1.4448 19 6 -1.2223 -8.2781 0.9632 20 1 -1.9925 -7.9956 1.6809 21 8 -1.7881 -8.4926 -0.3314 22 6 -0.4131 -3.5266 1.5397 23 6 0.2189 -2.3678 1.1984 24 1 -0.4850 0.8401 -0.0004 25 1 2.6806 -3.6819 -0.7722 26 1 1.5336 -5.7456 -0.1435 27 1 -1.3699 -5.8962 1.9888 28 1 1.9048 -7.9567 1.2573 29 1 1.2055 -7.0574 2.6307 30 1 0.0580 -10.0149 0.6100 31 1 -1.1246 -10.2347 1.9380 32 1 -2.4948 -9.1524 -0.3473 33 1 -1.2790 -3.4982 2.1845 34 1 -0.1457 -1.4222 1.5717 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601178.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:26 Heat of formation + Delta-G solvation = -64.890041 kcal Electronic energy + Delta-G solvation = -17721.212270 eV Core-core repulsion = 14811.855323 eV Total energy + Delta-G solvation = -2909.356947 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.85978 -37.74481 -36.30129 -34.87195 -32.92624 -30.20780 -29.35519 -28.58195 -27.69814 -24.43493 -22.73986 -21.86525 -20.51695 -19.95198 -17.94882 -17.22616 -16.52499 -15.99510 -15.60376 -15.25711 -15.04697 -14.31917 -13.80085 -13.67574 -13.08827 -12.83623 -12.47924 -12.44378 -12.08076 -11.97829 -11.62070 -11.23908 -11.03150 -10.86500 -10.73907 -10.52110 -10.36130 -9.76722 -9.68290 -9.32200 -9.23115 -8.58258 -7.51317 -6.65302 -6.43539 -4.05866 2.90050 3.08353 3.14706 3.19370 3.32648 3.60617 3.92091 4.05245 4.41723 4.52802 4.69195 4.78813 4.91125 5.24393 5.36936 5.46414 5.59861 5.81223 5.85703 6.03408 6.25111 6.28198 6.71701 6.82439 7.02941 7.17399 7.29422 7.41979 7.55214 7.64332 7.76726 8.13368 8.31277 8.42709 8.61167 8.76714 9.04696 9.12699 10.36773 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.052591 B = 0.004473 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.286230 B = 6258.935547 C = 6419.238037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.077 3.923 10 C -0.188 4.188 11 C -0.157 4.157 12 C 0.087 3.913 13 N -0.748 5.748 14 C 0.140 3.860 15 H 0.097 0.903 16 C 0.030 3.970 17 O -0.375 6.375 18 C 0.018 3.982 19 C 0.063 3.937 20 H 0.076 0.924 21 O -0.550 6.550 22 C -0.159 4.159 23 C -0.123 4.123 24 H 0.276 0.724 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.386 0.614 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.378 0.622 33 H 0.087 0.913 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.170 -12.996 2.498 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.074 3.926 10 C -0.209 4.209 11 C -0.179 4.179 12 C -0.010 4.010 13 N -0.383 5.383 14 C 0.032 3.968 15 H 0.115 0.885 16 C -0.049 4.049 17 O -0.294 6.294 18 C -0.060 4.060 19 C 0.003 3.997 20 H 0.094 0.906 21 O -0.354 6.354 22 C -0.181 4.181 23 C -0.143 4.143 24 H 0.087 0.913 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.220 0.780 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.225 0.775 33 H 0.105 0.895 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.734 -12.538 2.413 13.058 hybrid contribution -0.462 0.451 0.070 0.649 sum -3.196 -12.088 2.483 12.747 Atomic orbital electron populations 1.69849 1.07375 1.28660 1.37645 1.25799 0.94667 1.00914 0.92675 0.86405 0.80616 0.81171 0.78998 1.19758 1.20327 1.18684 1.19372 0.97571 0.91250 1.41593 0.90904 1.17508 0.92327 0.92030 0.90708 1.20563 1.02765 0.92693 1.04835 1.19879 0.97915 0.97136 1.02995 1.17315 0.96130 0.84939 1.02570 1.43818 1.34825 1.01907 1.57763 1.21762 0.91922 0.84271 0.98869 0.88492 1.23946 0.96684 0.85761 0.98489 1.88881 1.59212 1.37971 1.43303 1.24169 0.91808 0.96263 0.93757 1.23607 0.95681 0.95044 0.85348 0.90599 1.86603 1.55927 1.64183 1.28730 1.20027 1.01412 0.91828 1.04787 1.20920 0.98142 0.96289 0.98928 0.91290 0.89015 0.89503 0.78048 0.91850 0.88435 0.91266 0.88875 0.77490 0.89469 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.51 10.96 55.54 0.61 -20.91 16 2 C 0.07 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.90 19.24 29.59 -169.99 -5.03 14.21 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.47 -12.71 9.03 -37.87 -0.34 -13.05 16 8 H 0.07 1.91 7.90 -52.49 -0.41 1.50 16 9 C 0.08 2.09 5.57 -106.80 -0.59 1.50 16 10 C -0.19 -4.68 9.74 -39.27 -0.38 -5.07 16 11 C -0.16 -3.54 9.14 -39.77 -0.36 -3.91 16 12 C 0.09 1.88 6.67 -83.69 -0.56 1.32 16 13 N -0.75 -13.06 5.19 -50.56 -0.26 -13.33 16 14 C 0.14 2.12 2.74 -66.40 -0.18 1.94 16 15 H 0.10 1.64 6.51 -51.93 -0.34 1.30 16 16 C 0.03 0.43 7.50 37.73 0.28 0.71 16 17 O -0.37 -5.19 11.52 -35.23 -0.41 -5.59 16 18 C 0.02 0.19 7.45 38.21 0.28 0.47 16 19 C 0.06 0.75 4.22 -24.72 -0.10 0.65 16 20 H 0.08 0.84 7.75 -51.93 -0.40 0.43 16 21 O -0.55 -6.43 13.42 -35.23 -0.47 -6.90 16 22 C -0.16 -3.70 9.82 -39.77 -0.39 -4.10 16 23 C -0.12 -3.22 8.63 -39.27 -0.34 -3.56 16 24 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 25 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 26 H 0.09 1.75 6.24 -52.49 -0.33 1.42 16 27 H 0.39 6.11 8.35 -40.82 -0.34 5.77 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.10 1.52 7.93 -51.93 -0.41 1.11 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.38 2.40 9.12 45.56 0.42 2.82 16 33 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.12 3.23 6.19 -52.49 -0.32 2.90 16 LS Contribution 286.50 15.07 4.32 4.32 Total: -1.00 -30.06 286.50 -7.42 -37.47 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -3.39 Total: 11.96 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -2.78 Total: -21.24 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.35 Total: -34.23 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.88 Total: -12.50 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.06 -7.42 -37.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601178.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.415 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds