Wall clock time and date at job start Mon Mar 30 2020 04:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86802 * 119.99930 * 2 1 4 4 H 1.48499 * 109.47442 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47297 * 300.00417 * 3 2 1 6 6 H 1.48506 * 109.47025 * 60.00058 * 3 2 1 7 7 C 1.39864 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00290 * 163.05269 * 7 2 1 9 9 C 1.41138 * 120.00201 * 343.05010 * 7 2 1 10 10 C 1.40889 * 120.15317 * 334.53929 * 9 7 2 11 11 C 1.36343 * 119.83518 * 180.27317 * 10 9 7 12 12 C 1.39567 * 120.15900 * 359.47313 * 11 10 9 13 13 N 1.38851 * 119.83862 * 180.27872 * 12 11 10 14 14 C 1.46500 * 120.00238 * 0.26710 * 13 12 11 15 15 H 1.09004 * 110.43846 * 323.90877 * 14 13 12 16 16 C 1.54104 * 110.48603 * 86.45348 * 14 13 12 17 17 O 1.43744 * 107.28911 * 116.64665 * 16 14 13 18 18 C 1.44381 * 106.98059 * 26.51588 * 17 16 14 19 19 C 1.54816 * 110.49020 * 201.22161 * 14 13 12 20 20 H 1.08998 * 110.90776 * 102.24238 * 19 14 13 21 21 O 1.42902 * 110.90262 * 338.64317 * 19 14 13 22 22 C 1.39560 * 120.31853 * 0.55080 * 12 11 10 23 23 C 1.36345 * 120.15989 * 359.70191 * 22 12 11 24 24 H 0.96996 * 119.99982 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.07886 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.91326 * 179.72196 * 11 10 9 27 27 H 0.97003 * 120.00227 * 180.27319 * 13 12 11 28 28 H 1.08999 * 109.87925 * 236.07013 * 16 14 13 29 29 H 1.08995 * 109.87496 * 357.07544 * 16 14 13 30 30 H 1.08997 * 110.61913 * 78.43241 * 18 17 16 31 31 H 1.08993 * 110.62122 * 201.28022 * 18 17 16 32 32 H 0.96701 * 113.99493 * 180.02562 * 21 19 14 33 33 H 1.08001 * 119.92460 * 179.72941 * 22 12 11 34 34 H 1.07999 * 120.08308 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7030 1.3465 0.0006 5 1 1.8842 2.3965 -1.2124 6 1 1.8843 2.3965 1.2126 7 6 2.0084 -1.2112 -0.0005 8 1 3.0533 -1.2314 -0.2732 9 6 1.3488 -2.4072 0.3553 10 6 0.2184 -2.3690 1.1953 11 6 -0.4105 -3.5287 1.5394 12 6 0.0564 -4.7507 1.0527 13 7 -0.5926 -5.9272 1.4028 14 6 -1.7680 -5.8835 2.2761 15 1 -1.6541 -5.1034 3.0289 16 6 -3.0468 -5.6514 1.4481 17 8 -3.8763 -6.8144 1.6081 18 6 -3.5375 -7.4019 2.8827 19 6 -1.9954 -7.2596 2.9479 20 1 -1.6490 -7.2500 3.9814 21 8 -1.3554 -8.3006 2.2071 22 6 1.1759 -4.7962 0.2206 23 6 1.8178 -3.6448 -0.1276 24 1 -0.4850 0.8400 0.0004 25 1 -0.1462 -1.4237 1.5696 26 1 -1.2745 -3.5013 2.1868 27 1 -0.2677 -6.7781 1.0691 28 1 -3.5710 -4.7690 1.8152 29 1 -2.7890 -5.5189 0.3974 30 1 -4.0085 -6.8508 3.6967 31 1 -3.8300 -8.4514 2.9116 32 1 -1.4697 -9.1820 2.5883 33 1 1.5344 -5.7456 -0.1488 34 1 2.6843 -3.6815 -0.7713 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601182.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:29 Heat of formation + Delta-G solvation = -62.805108 kcal Electronic energy + Delta-G solvation = -17866.366605 eV Core-core repulsion = 14957.100067 eV Total energy + Delta-G solvation = -2909.266537 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.83268 -37.70009 -36.03794 -34.74443 -32.89486 -30.11423 -29.46198 -28.72385 -27.52488 -24.37475 -22.67847 -21.70667 -20.69765 -19.62943 -17.74980 -17.20766 -16.57533 -16.14996 -15.83528 -15.10361 -14.84682 -14.24430 -13.76316 -13.54264 -12.93978 -12.68065 -12.53383 -12.31588 -12.06252 -11.76967 -11.48004 -11.28531 -11.06315 -11.02183 -10.71327 -10.46066 -10.32858 -9.67722 -9.58859 -9.27835 -9.20795 -8.51491 -7.49671 -6.62636 -6.37656 -4.03005 2.90455 3.10092 3.16126 3.21595 3.33990 3.79721 3.93447 4.06611 4.37039 4.51006 4.73801 4.86833 5.04959 5.27789 5.41402 5.47772 5.59624 5.83042 5.88863 6.18103 6.27481 6.32878 6.81885 6.92606 6.93532 7.20708 7.36772 7.44847 7.58010 7.70104 7.86684 8.15655 8.30295 8.50551 8.74346 8.84564 9.06953 9.15903 10.38942 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.044430 B = 0.004869 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.054833 B = 5749.850527 C = 6160.507382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.074 3.926 10 C -0.122 4.122 11 C -0.168 4.168 12 C 0.090 3.910 13 N -0.740 5.740 14 C 0.144 3.856 15 H 0.094 0.906 16 C 0.027 3.973 17 O -0.374 6.374 18 C 0.016 3.984 19 C 0.063 3.937 20 H 0.077 0.923 21 O -0.547 6.547 22 C -0.156 4.156 23 C -0.184 4.184 24 H 0.275 0.725 25 H 0.118 0.882 26 H 0.086 0.914 27 H 0.397 0.603 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.378 0.622 33 H 0.087 0.913 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.171 -10.568 7.044 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.071 3.929 10 C -0.142 4.142 11 C -0.190 4.190 12 C -0.007 4.007 13 N -0.377 5.377 14 C 0.035 3.965 15 H 0.112 0.888 16 C -0.052 4.052 17 O -0.292 6.292 18 C -0.061 4.061 19 C 0.003 3.997 20 H 0.095 0.905 21 O -0.352 6.352 22 C -0.178 4.178 23 C -0.205 4.205 24 H 0.086 0.914 25 H 0.136 0.864 26 H 0.104 0.896 27 H 0.233 0.767 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.225 0.775 33 H 0.105 0.895 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.456 -9.878 6.591 13.068 hybrid contribution 0.298 0.177 0.370 0.507 sum -5.159 -9.701 6.962 13.007 Atomic orbital electron populations 1.69857 1.07343 1.28477 1.38020 1.25788 0.94660 1.00864 0.92748 0.86363 0.80968 0.81604 0.78302 1.18643 1.20273 1.20000 1.19403 0.97563 0.91219 1.41601 0.90908 1.17508 0.92425 0.92031 0.90943 1.20923 0.98113 0.96292 0.98887 1.20087 1.01871 0.92075 1.04953 1.17400 0.95686 0.85572 1.02017 1.43665 1.30946 1.06724 1.56334 1.22029 0.87499 0.94144 0.92860 0.88849 1.24009 0.90656 0.87692 1.02828 1.88883 1.61573 1.42562 1.36216 1.24209 0.94551 0.99596 0.87750 1.23607 0.91918 0.88894 0.95282 0.90542 1.86447 1.76310 1.18126 1.54364 1.19812 0.97720 0.97157 1.03149 1.20569 1.02594 0.92646 1.04664 0.91402 0.86386 0.89556 0.76729 0.92153 0.88686 0.91455 0.88914 0.77485 0.89486 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.60 10.96 55.54 0.61 -20.99 16 2 C 0.07 1.92 5.15 -17.34 -0.09 1.84 16 3 Si 0.90 19.32 29.59 -169.99 -5.03 14.29 16 4 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 7 C -0.47 -12.76 9.03 -37.87 -0.34 -13.10 16 8 H 0.07 1.93 7.90 -52.48 -0.41 1.51 16 9 C 0.07 2.01 5.57 -106.79 -0.59 1.41 16 10 C -0.12 -3.20 8.63 -39.26 -0.34 -3.54 16 11 C -0.17 -3.90 9.14 -39.77 -0.36 -4.27 16 12 C 0.09 1.99 6.67 -83.69 -0.56 1.43 16 13 N -0.74 -13.52 5.13 -50.55 -0.26 -13.78 16 14 C 0.14 2.19 2.94 -66.40 -0.20 1.99 16 15 H 0.09 1.41 6.56 -51.93 -0.34 1.07 16 16 C 0.03 0.42 7.50 37.73 0.28 0.70 16 17 O -0.37 -5.63 11.52 -35.23 -0.41 -6.04 16 18 C 0.02 0.18 7.45 38.21 0.28 0.46 16 19 C 0.06 0.73 4.45 -24.72 -0.11 0.62 16 20 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 21 O -0.55 -6.37 11.80 -35.23 -0.42 -6.79 16 22 C -0.16 -3.59 9.82 -39.77 -0.39 -3.98 16 23 C -0.18 -4.63 9.74 -39.26 -0.38 -5.01 16 24 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 25 H 0.12 3.20 6.19 -52.48 -0.32 2.88 16 26 H 0.09 1.79 6.24 -52.49 -0.33 1.47 16 27 H 0.40 7.10 7.20 -40.82 -0.29 6.80 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.70 7.93 -51.93 -0.41 1.29 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.38 2.46 9.12 45.56 0.42 2.87 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 284.53 15.07 4.29 4.29 Total: -1.00 -30.37 284.53 -7.38 -37.75 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -3.37 Total: 12.71 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -2.80 Total: -21.45 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.35 Total: -34.77 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.82 Total: -12.82 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.37 -7.38 -37.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601182.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.057 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds