Wall clock time and date at job start Mon Mar 30 2020 03:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00069 * 2 1 4 4 H 1.48501 * 109.47251 * 269.99983 * 3 2 1 5 5 H 1.48503 * 109.47279 * 30.00151 * 3 2 1 6 6 H 1.48503 * 109.47276 * 150.00216 * 3 2 1 7 7 C 1.37882 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00173 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99594 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.46918 * 180.02562 * 9 7 2 11 11 C 1.46043 * 119.41269 * 89.99948 * 10 9 7 12 12 C 1.52694 * 111.03973 * 142.26890 * 11 10 9 13 13 C 1.50568 * 109.84883 * 51.23706 * 12 11 10 14 14 C 1.37858 * 120.87244 * 146.17142 * 13 12 11 15 15 C 1.38401 * 119.95955 * 179.90115 * 14 13 12 16 16 C 1.38594 * 120.41274 * 359.83474 * 15 14 13 17 17 F 1.35096 * 119.93676 * 180.02562 * 16 15 14 18 18 C 1.38322 * 120.12713 * 0.03529 * 16 15 14 19 19 C 1.39205 * 119.54880 * 0.02562 * 18 16 15 20 20 C 1.34824 * 119.41555 * 270.02483 * 10 9 7 21 21 O 1.21557 * 120.44854 * 2.72601 * 20 10 9 22 22 H 0.96999 * 119.99776 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47251 * 60.00262 * 9 7 2 24 24 H 1.09001 * 109.47161 * 299.99815 * 9 7 2 25 25 H 1.08993 * 109.16963 * 21.86452 * 11 10 9 26 26 H 1.09005 * 109.16368 * 262.66662 * 11 10 9 27 27 H 1.09002 * 109.39630 * 171.32913 * 12 11 10 28 28 H 1.09000 * 109.39768 * 291.14266 * 12 11 10 29 29 H 1.08004 * 120.02907 * 359.77064 * 14 13 12 30 30 H 1.07996 * 119.79556 * 179.86189 * 15 14 13 31 31 H 1.07996 * 120.22575 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5754 -0.0022 11 6 4.2384 -3.2507 -1.2750 12 6 5.4777 -4.1396 -1.2001 13 6 5.3872 -5.0428 0.0013 14 6 5.9095 -6.3181 -0.0316 15 6 5.8176 -7.1317 1.0843 16 6 5.2056 -6.6715 2.2395 17 9 5.1217 -7.4736 3.3233 18 6 4.6804 -5.3927 2.2848 19 6 4.7707 -4.5733 1.1630 20 6 4.2205 -3.2006 1.1717 21 8 3.9705 -2.6437 2.2228 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6805 0.8889 24 1 3.8745 -0.6801 -0.8911 25 1 4.3807 -2.5034 -2.0555 26 1 3.3722 -3.8646 -1.5222 27 1 5.5441 -4.7451 -2.1040 28 1 6.3669 -3.5147 -1.1169 29 1 6.3883 -6.6832 -0.9283 30 1 6.2257 -8.1311 1.0548 31 1 4.2036 -5.0323 3.1843 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057498966.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:02 Heat of formation + Delta-G solvation = -76.646211 kcal Electronic energy + Delta-G solvation = -17632.633794 eV Core-core repulsion = 14599.306756 eV Total energy + Delta-G solvation = -3033.327038 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.96221 -41.67601 -39.21846 -37.34543 -35.07388 -33.42492 -32.44788 -30.14485 -29.51863 -25.67187 -24.92236 -23.59051 -22.70947 -20.11278 -19.18670 -18.81943 -17.93137 -17.19221 -16.96469 -16.65742 -16.54614 -16.13527 -15.89787 -15.02655 -14.79082 -14.56806 -14.30295 -14.25613 -13.92414 -13.76369 -13.21305 -12.94976 -12.63168 -12.50799 -12.30403 -12.05116 -12.00277 -11.78275 -10.87888 -10.83646 -10.21207 -9.72357 -9.41189 -8.36023 -6.42373 -0.31446 0.08646 1.31429 1.36940 1.47644 1.72944 2.10835 2.30473 2.66478 2.97522 3.15167 3.48698 3.62205 3.74044 3.90363 4.08729 4.27040 4.35454 4.49557 4.69615 4.73296 4.86152 4.90575 4.94745 5.03233 5.10230 5.16165 5.33966 5.41950 5.52098 5.80027 6.19383 6.54333 6.58901 7.13195 7.26651 8.81374 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.035877 B = 0.005899 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.250432 B = 4745.606761 C = 5141.910997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.244 1.244 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.541 4.541 8 H 0.023 0.977 9 C 0.222 3.778 10 N -0.593 5.593 11 C 0.103 3.897 12 C -0.088 4.088 13 C -0.058 4.058 14 C -0.077 4.077 15 C -0.113 4.113 16 C 0.073 3.927 17 F -0.144 7.144 18 C -0.119 4.119 19 C -0.125 4.125 20 C 0.538 3.462 21 O -0.590 6.590 22 H 0.269 0.731 23 H 0.020 0.980 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.057 0.943 27 H 0.147 0.853 28 H 0.102 0.898 29 H 0.193 0.807 30 H 0.178 0.822 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.115 -13.572 -6.409 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.168 1.168 5 H -0.208 1.208 6 H -0.180 1.180 7 C -0.579 4.579 8 H 0.041 0.959 9 C 0.100 3.900 10 N -0.322 5.322 11 C -0.018 4.018 12 C -0.125 4.125 13 C -0.059 4.059 14 C -0.094 4.094 15 C -0.131 4.131 16 C 0.054 3.946 17 F -0.123 7.123 18 C -0.139 4.139 19 C -0.129 4.129 20 C 0.328 3.672 21 O -0.472 6.472 22 H 0.078 0.922 23 H 0.038 0.962 24 H 0.080 0.920 25 H 0.126 0.874 26 H 0.075 0.925 27 H 0.165 0.835 28 H 0.121 0.879 29 H 0.210 0.790 30 H 0.195 0.805 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 16.821 -13.184 -5.888 22.168 hybrid contribution -0.914 0.893 1.074 1.669 sum 15.907 -12.291 -4.814 20.670 Atomic orbital electron populations 1.70063 1.08364 1.28475 1.51713 1.25916 0.95717 1.03558 0.93600 0.85651 0.79032 0.77746 0.80160 1.16811 1.20835 1.17962 1.21528 0.91609 0.93159 1.51614 0.95889 1.19485 0.92859 0.79920 0.97776 1.47781 1.63099 1.15016 1.06338 1.21664 0.98372 0.97198 0.84586 1.20995 0.97761 0.96863 0.96870 1.20485 0.95475 0.96347 0.93585 1.21323 0.97730 0.90695 0.99635 1.21753 0.97990 1.02782 0.90578 1.17697 1.03055 0.88298 0.85585 1.91486 1.94740 1.72441 1.53615 1.21049 1.00510 0.93424 0.98876 1.19616 1.03767 0.93409 0.96073 1.18783 0.78072 0.86752 0.83613 1.90701 1.54689 1.68936 1.32914 0.92172 0.96230 0.92031 0.87374 0.92506 0.83487 0.87939 0.78956 0.80488 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 2 C 0.01 0.60 5.47 84.66 0.46 1.06 16 3 Si 0.95 44.34 27.47 68.60 1.88 46.22 16 4 H -0.24 -10.17 7.11 99.48 0.71 -9.47 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.26 -11.49 6.54 99.48 0.65 -10.84 16 7 C -0.54 -32.54 9.94 25.60 0.25 -32.28 16 8 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 9 C 0.22 10.93 4.20 85.63 0.36 11.29 16 10 N -0.59 -25.04 2.78 -831.18 -2.31 -27.36 16 11 C 0.10 2.94 6.44 86.36 0.56 3.49 16 12 C -0.09 -1.55 6.04 29.70 0.18 -1.37 16 13 C -0.06 -1.31 5.68 -19.65 -0.11 -1.42 16 14 C -0.08 -1.10 9.73 22.22 0.22 -0.88 16 15 C -0.11 -1.88 10.01 22.39 0.22 -1.66 16 16 C 0.07 1.87 7.30 22.37 0.16 2.04 16 17 F -0.14 -3.83 17.26 44.97 0.78 -3.06 16 18 C -0.12 -3.95 9.62 22.52 0.22 -3.73 16 19 C -0.13 -4.29 5.78 -20.15 -0.12 -4.41 16 20 C 0.54 24.36 7.48 86.79 0.65 25.01 16 21 O -0.59 -32.68 16.21 -3.89 -0.06 -32.74 16 22 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 23 H 0.02 1.06 6.50 -2.39 -0.02 1.04 16 24 H 0.06 2.62 7.22 -2.39 -0.02 2.61 16 25 H 0.11 2.62 7.74 -2.39 -0.02 2.60 16 26 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.15 1.16 8.07 -2.39 -0.02 1.14 16 28 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.19 0.81 8.06 -2.91 -0.02 0.78 16 30 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.12 4.43 7.85 -2.91 -0.02 4.41 16 Total: -1.00 -83.39 272.26 4.73 -78.66 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: 1.09 Total: 1.46 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 3.05 Total: -2.86 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -2.02 Total: -87.69 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.06 Total: -32.74 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.78 Total: -3.06 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Total: -83.39 4.73 -78.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057498966.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.015 kcal (2) G-P(sol) polarization free energy of solvation -83.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds