Wall clock time and date at job start Mon Mar 30 2020 04:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99950 * 2 1 4 4 H 1.48498 * 109.47108 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46977 * 300.00134 * 3 2 1 6 6 H 1.48500 * 109.47031 * 59.99846 * 3 2 1 7 7 C 1.37875 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99892 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46727 * 180.02562 * 9 7 2 11 11 O 1.42905 * 109.46862 * 180.02562 * 10 9 7 12 12 C 1.35891 * 117.00054 * 180.02562 * 11 10 9 13 13 C 1.38794 * 119.88513 * 359.97438 * 12 11 10 14 14 C 1.38257 * 119.71250 * 179.81841 * 13 12 11 15 15 C 1.37792 * 120.04649 * 0.23839 * 14 13 12 16 16 C 1.38930 * 120.87414 * 359.90844 * 15 14 13 17 17 C 1.38418 * 119.88616 * 180.02562 * 12 11 10 18 18 O 1.36152 * 111.21504 * 179.46043 * 16 15 14 19 19 C 1.43777 * 109.22256 * 19.40178 * 18 16 15 20 20 C 1.51671 * 132.08853 * 181.24145 * 15 14 13 21 21 H 1.09000 * 111.10298 * 45.57121 * 20 15 14 22 22 N 1.46904 * 110.76006 * 281.93606 * 20 15 14 23 23 H 0.97006 * 119.99830 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47226 * 60.00504 * 9 7 2 25 25 H 1.08998 * 109.47123 * 299.99674 * 9 7 2 26 26 H 1.08997 * 109.47832 * 60.00020 * 10 9 7 27 27 H 1.08998 * 109.47201 * 299.99235 * 10 9 7 28 28 H 1.07998 * 120.14147 * 359.79873 * 13 12 11 29 29 H 1.08002 * 119.97260 * 179.97438 * 14 13 12 30 30 H 1.07999 * 119.89902 * 0.02670 * 17 12 11 31 31 H 1.08993 * 110.74653 * 90.49178 * 19 18 16 32 32 H 1.08998 * 110.74082 * 213.84294 * 19 18 16 33 33 H 1.00900 * 110.99966 * 186.04201 * 22 20 15 34 34 H 1.00900 * 110.99837 * 309.99534 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 8 1.5308 -4.8996 0.0032 12 6 2.2709 -6.0393 0.0047 13 6 3.6568 -5.9639 0.0051 14 6 4.4063 -7.1256 0.0104 15 6 3.7780 -8.3520 0.0104 16 6 2.3917 -8.4428 0.0069 17 6 1.6401 -7.2713 0.0048 18 8 1.9831 -9.7415 -0.0045 19 6 3.0616 -10.5811 0.4418 20 6 4.3159 -9.7698 0.0397 21 1 5.1036 -9.8754 0.7858 22 7 4.7975 -10.1717 -1.2887 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8920 26 1 2.8720 -3.6035 0.8926 27 1 2.8719 -3.6051 -0.8873 28 1 4.1476 -5.0018 0.0010 29 1 5.4850 -7.0719 0.0104 30 1 0.5613 -7.3238 0.0032 31 1 3.0213 -10.7198 1.5221 32 1 3.0415 -11.5416 -0.0731 33 1 5.0647 -11.1446 -1.2974 34 1 4.1051 -9.9805 -1.9974 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062803734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:56 Heat of formation + Delta-G solvation = -49.891758 kcal Electronic energy + Delta-G solvation = -17286.995587 eV Core-core repulsion = 14378.289015 eV Total energy + Delta-G solvation = -2908.706573 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.29117 -39.13809 -36.16645 -34.72723 -33.35954 -30.91641 -29.95523 -29.18603 -27.82475 -25.03830 -23.33942 -22.25663 -21.30031 -20.61629 -18.08684 -17.20416 -16.43722 -16.27231 -16.02931 -15.63514 -15.33547 -14.75071 -14.58056 -14.33017 -13.80794 -13.44897 -12.84721 -12.60378 -12.33408 -12.28907 -11.88081 -11.79122 -11.18545 -11.04827 -10.75096 -10.71919 -10.47579 -9.87452 -9.67928 -9.30209 -9.12863 -8.48519 -8.40085 -7.86161 -6.11428 -4.16191 1.41711 1.47741 2.96453 3.26305 3.33618 3.37227 3.72995 3.94911 4.26050 4.33217 4.36295 4.41864 4.78002 4.96072 5.11361 5.21587 5.25211 5.32865 5.48993 5.68186 5.91795 6.00683 6.02495 6.24971 6.35671 6.49292 6.52523 6.68521 6.70613 7.04175 7.13832 7.48278 7.62180 7.77944 8.00369 8.21976 8.89623 9.48364 11.00156 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.057221 B = 0.003732 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.212246 B = 7500.846195 C = 7873.515623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.064 3.936 11 O -0.311 6.311 12 C 0.186 3.814 13 C -0.240 4.240 14 C -0.011 4.011 15 C -0.225 4.225 16 C 0.140 3.860 17 C -0.184 4.184 18 O -0.304 6.304 19 C 0.014 3.986 20 C 0.113 3.887 21 H 0.104 0.896 22 N -0.832 5.832 23 H 0.263 0.737 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.138 0.862 29 H 0.126 0.874 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.342 0.658 34 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.418 -19.915 0.439 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.009 4.009 11 O -0.223 6.223 12 C 0.138 3.862 13 C -0.259 4.259 14 C -0.030 4.030 15 C -0.227 4.227 16 C 0.095 3.905 17 C -0.204 4.204 18 O -0.218 6.218 19 C -0.064 4.064 20 C 0.001 3.999 21 H 0.122 0.878 22 N -0.362 5.362 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.155 0.845 29 H 0.144 0.856 30 H 0.152 0.848 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.155 0.845 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.425 -19.317 0.482 21.080 hybrid contribution -0.069 0.268 0.063 0.284 sum 8.356 -19.049 0.545 20.808 Atomic orbital electron populations 1.69989 1.06115 1.26891 1.49727 1.24996 0.94906 0.99419 0.94887 0.86425 0.79987 0.83220 0.77723 1.19611 1.20832 1.20836 1.21003 0.93109 0.90146 1.52206 0.92247 1.19144 0.94191 0.88967 0.98968 1.23412 0.97162 0.80416 0.99954 1.86175 1.36633 1.13149 1.86373 1.18638 0.89781 0.86892 0.90855 1.21305 0.92918 0.99648 1.11988 1.20015 0.99554 0.89697 0.93728 1.20293 0.92989 0.94607 1.14764 1.19052 0.92002 0.84458 0.95019 1.19198 1.00428 0.87072 1.13672 1.86831 1.38903 1.13992 1.82059 1.24723 0.86267 0.94383 1.00986 1.21451 0.95240 0.90749 0.92422 0.87822 1.58792 1.47014 1.25703 1.04664 0.92739 0.95313 0.95335 0.92831 0.92826 0.84465 0.85640 0.84766 0.90159 0.88125 0.84472 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.64 5.34 -27.88 -0.15 0.49 16 10 C 0.06 1.36 4.68 37.16 0.17 1.54 16 11 O -0.31 -6.38 10.13 -19.40 -0.20 -6.57 16 12 C 0.19 3.28 6.67 -39.31 -0.26 3.02 16 13 C -0.24 -3.73 9.04 -39.37 -0.36 -4.09 16 14 C -0.01 -0.15 10.03 -39.74 -0.40 -0.55 16 15 C -0.23 -2.93 5.82 -104.05 -0.61 -3.54 16 16 C 0.14 2.04 7.03 -38.97 -0.27 1.76 16 17 C -0.18 -3.00 10.00 -39.16 -0.39 -3.39 16 18 O -0.30 -3.96 11.11 -20.22 -0.22 -4.18 16 19 C 0.01 0.12 7.72 38.05 0.29 0.42 16 20 C 0.11 1.08 4.30 -67.49 -0.29 0.79 16 21 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 22 N -0.83 -7.14 9.36 -4.48 -0.04 -7.19 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 27 H 0.05 1.07 7.65 -51.93 -0.40 0.68 16 28 H 0.14 2.06 6.29 -52.49 -0.33 1.73 16 29 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.34 1.99 9.07 -39.29 -0.36 1.63 16 34 H 0.35 3.19 8.94 -39.29 -0.35 2.84 16 LS Contribution 292.38 15.07 4.41 4.41 Total: -1.00 -30.80 292.38 -7.34 -38.15 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.33 Total: 1.75 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -2.67 Total: -16.86 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.69 Total: -32.83 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.42 Total: -10.76 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.80 -7.34 -38.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062803734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.744 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds