Wall clock time and date at job start Mon Mar 30 2020 03:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38534 * 120.81806 * 2 1 4 4 C 1.38249 * 119.24112 * 179.97438 * 3 2 1 5 5 N 1.31894 * 120.93024 * 0.02562 * 4 3 2 6 6 C 1.31774 * 121.80725 * 359.97438 * 5 4 3 7 7 C 1.38958 * 120.65008 * 359.74539 * 6 5 4 8 8 N 1.39750 * 120.49131 * 180.28817 * 7 6 5 9 9 C 1.34770 * 120.00421 * 24.76964 * 8 7 6 10 10 O 1.21468 * 120.00050 * 5.53812 * 9 8 7 11 11 C 1.48734 * 120.00135 * 185.53671 * 9 8 7 12 12 O 1.21514 * 119.99864 * 359.97438 * 11 9 8 13 13 N 1.34781 * 120.00022 * 180.02562 * 11 9 8 14 14 C 1.36115 * 119.99616 * 180.02562 * 13 11 9 15 15 H 1.07997 * 120.00564 * 359.97438 * 14 13 11 16 16 C 1.39593 * 119.99437 * 179.97438 * 14 13 11 17 17 N 1.31014 * 120.00109 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99860 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47352 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47309 * 119.99831 * 18 16 14 21 21 H 1.48501 * 109.47381 * 239.99647 * 18 16 14 22 22 H 1.09006 * 109.47036 * 89.99806 * 1 2 3 23 23 H 1.09003 * 109.47252 * 330.00029 * 1 2 3 24 24 H 1.09001 * 109.47128 * 209.99792 * 1 2 3 25 25 H 1.07997 * 120.38505 * 359.95812 * 3 2 1 26 26 H 1.07996 * 119.53159 * 180.02562 * 4 3 2 27 27 H 1.07991 * 119.67556 * 180.02562 * 6 5 4 28 28 H 0.96999 * 119.99602 * 204.77664 * 8 7 6 29 29 H 0.97000 * 119.99647 * 359.97438 * 13 11 9 30 30 H 0.96999 * 119.99519 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1897 0.0000 4 6 3.5987 1.1517 0.0005 5 7 4.2452 0.0021 0.0005 6 6 3.6096 -1.1522 0.0005 7 6 2.2207 -1.1961 0.0058 8 7 1.5500 -2.4222 0.0119 9 6 2.1581 -3.5206 0.5018 10 8 3.2482 -3.4270 1.0293 11 6 1.4944 -4.8475 0.3965 12 8 0.4037 -4.9410 -0.1309 13 7 2.1024 -5.9459 0.8869 14 6 1.4951 -7.1602 0.7900 15 1 0.5261 -7.2436 0.3206 16 6 2.1250 -8.2979 1.2974 17 7 3.3008 -8.1969 1.8664 18 14 1.2915 -9.9644 1.1651 19 1 -0.0193 -9.8096 0.4846 20 1 2.1505 -10.8866 0.3797 21 1 1.0809 -10.5219 2.5253 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5138 25 1 1.6965 2.1361 -0.0007 26 1 4.1566 2.0763 0.0010 27 1 4.1736 -2.0732 0.0010 28 1 0.6468 -2.4826 -0.3366 29 1 2.9729 -5.8711 1.3081 30 1 3.7386 -8.9876 2.2186 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070959427.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:44 Heat of formation + Delta-G solvation = -35.731762 kcal Electronic energy + Delta-G solvation = -17297.557812 eV Core-core repulsion = 14285.924919 eV Total energy + Delta-G solvation = -3011.632893 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.82400 -39.22903 -37.39231 -35.35148 -34.30162 -33.20183 -31.56096 -30.01765 -27.84225 -26.07753 -24.20284 -22.59922 -21.70247 -19.73360 -18.54173 -17.78263 -16.80975 -16.33240 -16.02313 -15.45223 -14.96451 -14.61119 -14.19256 -13.99630 -13.87165 -13.08309 -12.96984 -12.91753 -12.72669 -12.70290 -11.89786 -11.79925 -11.31129 -10.81617 -10.62443 -10.49007 -10.45115 -9.86036 -9.43925 -9.33690 -8.45924 -8.37550 -8.06676 -6.81761 -4.12353 1.11466 1.26810 2.26516 3.01790 3.05813 3.12414 3.20756 3.86498 3.94471 4.13589 4.65458 4.68791 4.71407 4.75376 5.03329 5.06181 5.32669 5.41860 5.43283 5.71599 5.81640 5.90580 6.06523 6.23187 6.36948 6.93148 7.17389 7.40734 7.65275 8.04784 8.16098 8.36398 8.79946 9.14293 9.68440 10.32319 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.048124 B = 0.004758 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.692114 B = 5883.867059 C = 6387.921993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.083 4.083 3 C -0.154 4.154 4 C 0.066 3.934 5 N -0.468 5.468 6 C 0.090 3.910 7 C 0.111 3.889 8 N -0.648 5.648 9 C 0.511 3.489 10 O -0.523 6.523 11 C 0.388 3.612 12 O -0.597 6.597 13 N -0.489 5.489 14 C -0.303 4.303 15 H 0.116 0.884 16 C 0.032 3.968 17 N -0.860 5.860 18 Si 0.941 3.059 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.276 1.276 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.134 0.866 26 H 0.153 0.847 27 H 0.178 0.822 28 H 0.422 0.578 29 H 0.406 0.594 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.002 13.020 -2.680 13.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.174 4.174 4 C -0.091 4.091 5 N -0.177 5.177 6 C -0.070 4.070 7 C 0.012 3.988 8 N -0.294 5.294 9 C 0.298 3.702 10 O -0.398 6.398 11 C 0.172 3.828 12 O -0.487 6.487 13 N -0.123 5.123 14 C -0.434 4.434 15 H 0.134 0.866 16 C -0.176 4.176 17 N -0.498 5.498 18 Si 0.766 3.234 19 H -0.186 1.186 20 H -0.201 1.201 21 H -0.201 1.201 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.152 0.848 26 H 0.170 0.830 27 H 0.195 0.805 28 H 0.260 0.740 29 H 0.241 0.759 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.891 12.788 -2.546 13.176 hybrid contribution -1.135 -0.675 0.115 1.325 sum -3.026 12.113 -2.431 12.719 Atomic orbital electron populations 1.20766 0.90037 1.03638 1.02964 1.20086 0.96817 0.91642 1.00813 1.21811 0.95392 0.97730 1.02453 1.22675 0.91696 0.96400 0.98316 1.67754 1.40581 0.98099 1.11259 1.23336 0.90213 0.97252 0.96166 1.18867 0.93399 0.85611 1.00913 1.43225 1.19572 1.05688 1.60888 1.21020 0.85599 0.86279 0.77255 1.90672 1.20913 1.86343 1.41846 1.18583 0.88782 0.84104 0.91284 1.90604 1.21620 1.85296 1.51138 1.41593 1.19469 1.05757 1.45436 1.20009 1.04546 0.82541 1.36262 0.86615 1.25662 0.95628 1.01027 0.95262 1.69487 1.13807 1.32332 1.34126 0.85623 0.79575 0.79714 0.78480 1.18569 1.20111 1.20123 0.90425 0.90664 0.90958 0.84766 0.82990 0.80546 0.73990 0.75863 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.54 36.00 0.34 -0.81 16 2 C -0.08 -1.06 5.93 -104.12 -0.62 -1.68 16 3 C -0.15 -1.72 9.81 -39.47 -0.39 -2.11 16 4 C 0.07 0.84 11.18 -17.52 -0.20 0.64 16 5 N -0.47 -7.54 10.35 -13.07 -0.14 -7.68 16 6 C 0.09 1.57 9.90 -17.31 -0.17 1.40 16 7 C 0.11 1.78 6.43 -83.59 -0.54 1.24 16 8 N -0.65 -11.18 5.01 -10.37 -0.05 -11.23 16 9 C 0.51 10.72 7.67 -11.92 -0.09 10.63 16 10 O -0.52 -11.63 13.65 5.39 0.07 -11.56 16 11 C 0.39 9.35 7.81 -11.92 -0.09 9.26 16 12 O -0.60 -15.33 16.04 5.35 0.09 -15.25 16 13 N -0.49 -12.53 5.25 -11.61 -0.06 -12.59 16 14 C -0.30 -8.01 9.67 -15.15 -0.15 -8.16 16 15 H 0.12 3.12 7.15 -52.49 -0.38 2.75 16 16 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 17 N -0.86 -22.18 13.03 55.53 0.72 -21.46 16 18 Si 0.94 19.27 29.56 -169.99 -5.02 14.24 16 19 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 22 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 24 H 0.07 0.77 7.09 -51.93 -0.37 0.40 16 25 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 26 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.18 3.36 5.80 -52.49 -0.30 3.06 16 28 H 0.42 6.61 6.98 -40.82 -0.28 6.33 16 29 H 0.41 10.44 7.35 -40.82 -0.30 10.14 16 30 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 LS Contribution 272.69 15.07 4.11 4.11 Total: -1.00 -29.69 272.69 -4.73 -34.42 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -2.46 Total: 15.86 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: -1.99 Total: 11.13 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.48 Total: -52.96 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: 0.16 Total: -26.80 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.69 -4.73 -34.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070959427.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.311 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds