Wall clock time and date at job start Mon Mar 30 2020 03:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38534 * 120.81806 * 2 1 4 4 C 1.38249 * 119.24112 * 179.97438 * 3 2 1 5 5 N 1.31894 * 120.93024 * 0.02562 * 4 3 2 6 6 C 1.31774 * 121.80725 * 359.97438 * 5 4 3 7 7 C 1.38958 * 120.65008 * 359.74539 * 6 5 4 8 8 N 1.39750 * 120.49131 * 180.28817 * 7 6 5 9 9 C 1.34770 * 120.00421 * 24.76964 * 8 7 6 10 10 O 1.21468 * 120.00050 * 5.53812 * 9 8 7 11 11 C 1.48734 * 120.00135 * 185.53671 * 9 8 7 12 12 O 1.21514 * 119.99864 * 359.97438 * 11 9 8 13 13 N 1.34781 * 120.00022 * 180.02562 * 11 9 8 14 14 C 1.36115 * 119.99616 * 180.02562 * 13 11 9 15 15 H 1.07997 * 120.00564 * 359.97438 * 14 13 11 16 16 C 1.39593 * 119.99437 * 179.97438 * 14 13 11 17 17 N 1.31014 * 120.00109 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99860 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47352 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47309 * 119.99831 * 18 16 14 21 21 H 1.48501 * 109.47381 * 239.99647 * 18 16 14 22 22 H 1.09006 * 109.47036 * 89.99806 * 1 2 3 23 23 H 1.09003 * 109.47252 * 330.00029 * 1 2 3 24 24 H 1.09001 * 109.47128 * 209.99792 * 1 2 3 25 25 H 1.07997 * 120.38505 * 359.95812 * 3 2 1 26 26 H 1.07996 * 119.53159 * 180.02562 * 4 3 2 27 27 H 1.07991 * 119.67556 * 180.02562 * 6 5 4 28 28 H 0.96999 * 119.99602 * 204.77664 * 8 7 6 29 29 H 0.97000 * 119.99647 * 359.97438 * 13 11 9 30 30 H 0.96999 * 119.99519 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1897 0.0000 4 6 3.5987 1.1517 0.0005 5 7 4.2452 0.0021 0.0005 6 6 3.6096 -1.1522 0.0005 7 6 2.2207 -1.1961 0.0058 8 7 1.5500 -2.4222 0.0119 9 6 2.1581 -3.5206 0.5018 10 8 3.2482 -3.4270 1.0293 11 6 1.4944 -4.8475 0.3965 12 8 0.4037 -4.9410 -0.1309 13 7 2.1024 -5.9459 0.8869 14 6 1.4951 -7.1602 0.7900 15 1 0.5261 -7.2436 0.3206 16 6 2.1250 -8.2979 1.2974 17 7 3.3008 -8.1969 1.8664 18 14 1.2915 -9.9644 1.1651 19 1 -0.0193 -9.8096 0.4846 20 1 2.1505 -10.8866 0.3797 21 1 1.0809 -10.5219 2.5253 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5138 25 1 1.6965 2.1361 -0.0007 26 1 4.1566 2.0763 0.0010 27 1 4.1736 -2.0732 0.0010 28 1 0.6468 -2.4826 -0.3366 29 1 2.9729 -5.8711 1.3081 30 1 3.7386 -8.9876 2.2186 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070959427.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:43 Heat of formation + Delta-G solvation = -58.023870 kcal Electronic energy + Delta-G solvation = -17298.524470 eV Core-core repulsion = 14285.924919 eV Total energy + Delta-G solvation = -3012.599551 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.20723 -40.73882 -39.19630 -36.87279 -36.08947 -34.35259 -33.50978 -31.22589 -28.84075 -27.90461 -25.74265 -23.93961 -22.88795 -21.37335 -20.47334 -19.34858 -18.31596 -17.67867 -17.21452 -17.16780 -16.66884 -16.24195 -15.74590 -15.33205 -15.11038 -14.80143 -14.49197 -14.00563 -13.77122 -13.71669 -13.63877 -13.00407 -12.77387 -12.60012 -12.31110 -12.10360 -12.06139 -11.71931 -10.55552 -10.37614 -10.33770 -10.28904 -9.34714 -8.71855 -6.15704 -0.14175 0.20512 0.65008 1.39026 1.45057 1.52210 1.63943 2.24386 2.25147 2.81465 3.05916 3.09785 3.62304 3.68477 3.78146 3.87544 4.02910 4.29346 4.59839 4.68631 4.75384 4.90479 5.11786 5.18807 5.21089 5.21357 5.60836 5.76453 5.97575 6.25554 6.64254 6.85633 7.02363 7.18095 7.70875 8.43691 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.048124 B = 0.004758 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.692114 B = 5883.867059 C = 6387.921993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.072 4.072 3 C -0.139 4.139 4 C 0.070 3.930 5 N -0.496 5.496 6 C 0.065 3.935 7 C 0.079 3.921 8 N -0.630 5.630 9 C 0.519 3.481 10 O -0.540 6.540 11 C 0.388 3.612 12 O -0.614 6.614 13 N -0.502 5.502 14 C -0.342 4.342 15 H 0.103 0.897 16 C -0.002 4.002 17 N -0.890 5.890 18 Si 1.012 2.988 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.265 1.265 22 H 0.096 0.904 23 H 0.104 0.896 24 H 0.060 0.940 25 H 0.183 0.817 26 H 0.190 0.810 27 H 0.147 0.853 28 H 0.429 0.571 29 H 0.402 0.598 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 15.138 -2.907 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.083 4.083 3 C -0.159 4.159 4 C -0.087 4.087 5 N -0.206 5.206 6 C -0.093 4.093 7 C -0.018 4.018 8 N -0.276 5.276 9 C 0.304 3.696 10 O -0.417 6.417 11 C 0.173 3.827 12 O -0.504 6.504 13 N -0.135 5.135 14 C -0.472 4.472 15 H 0.121 0.879 16 C -0.208 4.208 17 N -0.527 5.527 18 Si 0.832 3.168 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.190 1.190 22 H 0.114 0.886 23 H 0.123 0.877 24 H 0.079 0.921 25 H 0.201 0.799 26 H 0.207 0.793 27 H 0.164 0.836 28 H 0.269 0.731 29 H 0.237 0.763 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.138 14.936 -2.782 15.514 hybrid contribution -0.735 -1.031 0.145 1.275 sum -3.873 13.905 -2.637 14.673 Atomic orbital electron populations 1.20895 0.87599 1.04555 1.04408 1.20541 0.98551 0.90717 0.98451 1.22329 0.94867 0.98913 0.99744 1.23431 0.93040 0.96352 0.95896 1.67719 1.41564 0.98730 1.12605 1.22953 0.90865 0.97121 0.98362 1.18994 0.93189 0.85907 1.03704 1.42946 1.19537 1.05384 1.59731 1.20371 0.85278 0.86135 0.77805 1.90679 1.21501 1.86547 1.42972 1.19139 0.88475 0.85095 0.90012 1.90566 1.22345 1.86037 1.51464 1.41668 1.19433 1.06237 1.46151 1.20096 1.04892 0.83650 1.38544 0.87894 1.26596 0.95988 1.04206 0.93974 1.69551 1.14897 1.33792 1.34492 0.84610 0.78440 0.74828 0.78874 1.18555 1.19077 1.19024 0.88581 0.87706 0.92110 0.79936 0.79268 0.83582 0.73118 0.76339 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 9.54 71.23 0.68 -1.20 16 2 C -0.07 -1.64 5.93 -19.54 -0.12 -1.75 16 3 C -0.14 -2.47 9.81 22.34 0.22 -2.26 16 4 C 0.07 1.54 11.18 84.69 0.95 2.48 16 5 N -0.50 -15.65 10.35 -195.27 -2.02 -17.68 16 6 C 0.07 2.33 9.90 84.87 0.84 3.17 16 7 C 0.08 2.51 6.43 38.30 0.25 2.76 16 8 N -0.63 -21.97 5.01 -305.05 -1.53 -23.50 16 9 C 0.52 22.56 7.67 87.05 0.67 23.23 16 10 O -0.54 -25.27 13.65 -3.62 -0.05 -25.32 16 11 C 0.39 19.43 7.81 87.05 0.68 20.11 16 12 O -0.61 -32.36 16.04 -3.76 -0.06 -32.42 16 13 N -0.50 -26.88 5.25 -308.95 -1.62 -28.50 16 14 C -0.34 -18.73 9.67 84.36 0.82 -17.91 16 15 H 0.10 5.77 7.15 -2.91 -0.02 5.75 16 16 C 0.00 -0.12 5.51 85.14 0.47 0.35 16 17 N -0.89 -46.78 13.03 21.77 0.28 -46.49 16 18 Si 1.01 39.57 29.56 68.60 2.03 41.60 16 19 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 20 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 21 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 22 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 23 H 0.10 1.09 8.10 -2.39 -0.02 1.07 16 24 H 0.06 1.14 7.09 -2.39 -0.02 1.12 16 25 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 26 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 27 H 0.15 5.98 5.80 -2.92 -0.02 5.97 16 28 H 0.43 13.38 6.98 -92.71 -0.65 12.74 16 29 H 0.40 21.78 7.35 -92.71 -0.68 21.10 16 30 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 Total: -1.00 -67.27 272.69 2.36 -64.91 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: -0.12 Total: 38.43 kcal Atomic # 6 Polarization: 23.52 SS G_CDS: 5.45 Total: 28.97 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -4.89 Total: -116.18 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -0.11 Total: -57.74 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -67.27 2.36 -64.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070959427.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.886 kcal (2) G-P(sol) polarization free energy of solvation -67.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds