Wall clock time and date at job start Mon Mar 30 2020 03:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47620 * 2 1 4 4 C 1.50708 * 109.46906 * 119.99953 * 2 1 3 5 5 C 1.35253 * 126.65086 * 119.99619 * 4 2 1 6 6 C 1.42350 * 103.92474 * 180.02562 * 5 4 2 7 7 C 1.48144 * 126.95263 * 180.02562 * 6 5 4 8 8 N 1.31584 * 126.41579 * 180.02562 * 7 6 5 9 9 C 1.35555 * 105.54905 * 179.73161 * 8 7 6 10 10 C 1.41790 * 126.45494 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99771 * 0.02562 * 10 9 8 12 12 C 1.39947 * 119.99993 * 179.97438 * 10 9 8 13 13 N 1.30756 * 120.00421 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99895 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47123 * 59.99925 * 14 12 10 16 16 H 1.48497 * 109.47203 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46714 * 299.99851 * 14 12 10 18 18 N 1.31919 * 107.09565 * 359.97438 * 9 8 7 19 19 O 1.21279 * 110.07070 * 359.97438 * 18 9 8 20 20 N 1.31059 * 106.10122 * 0.26007 * 6 5 4 21 21 O 1.20908 * 111.41896 * 359.54011 * 20 6 5 22 22 H 1.09002 * 109.47021 * 300.00417 * 1 2 3 23 23 H 1.09000 * 109.46997 * 59.99935 * 1 2 3 24 24 H 1.08996 * 109.47753 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47021 * 239.99583 * 2 1 3 26 26 H 1.08995 * 109.47085 * 60.00065 * 3 2 1 27 27 H 1.09001 * 109.47129 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46750 * 299.99628 * 3 2 1 29 29 H 1.07997 * 128.03992 * 0.02562 * 5 4 2 30 30 H 0.96994 * 120.00473 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 2.8129 -1.8145 1.2633 6 6 2.9908 -2.0672 2.6529 7 6 3.7697 -3.1685 3.2652 8 7 3.9268 -3.3925 4.5523 9 6 4.7035 -4.5003 4.6362 10 6 5.1453 -5.1313 5.8266 11 1 4.8623 -4.7289 6.7881 12 6 5.9473 -6.2760 5.7557 13 7 6.2896 -6.7634 4.5917 14 14 6.5288 -7.1077 7.3241 15 1 5.3524 -7.5425 8.1192 16 1 7.3582 -8.2902 6.9791 17 1 7.3385 -6.1511 8.1206 18 7 4.9700 -4.8815 3.4017 19 8 4.4416 -4.1293 2.6106 20 7 2.3219 -1.1314 3.2810 21 8 1.7916 -0.3710 2.5048 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.6769 1.9563 0.8899 27 1 3.1301 1.4424 0.0005 28 1 1.6769 1.9562 -0.8900 29 1 3.2091 -2.3744 0.4291 30 1 6.8457 -7.5565 4.5425 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074107443.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:53 Heat of formation + Delta-G solvation = 86.496779 kcal Electronic energy + Delta-G solvation = -17222.260060 eV Core-core repulsion = 14215.927395 eV Total energy + Delta-G solvation = -3006.332665 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.22355 -45.47563 -36.98421 -36.69301 -35.96469 -34.81637 -32.12701 -31.66590 -28.79392 -27.94793 -26.03650 -24.62872 -23.57961 -23.36890 -21.38059 -19.23325 -18.97381 -18.26729 -18.20314 -17.79977 -16.85962 -16.43196 -15.79745 -15.10692 -14.83183 -14.47437 -14.06174 -13.44545 -13.20613 -13.18973 -12.95807 -12.84981 -12.73425 -12.46748 -12.29058 -12.11854 -12.08504 -12.03165 -11.72162 -11.41425 -11.09880 -10.51567 -10.11566 -8.73457 -6.92557 -0.12743 0.58469 1.24746 1.35214 1.51666 1.55674 1.71313 1.99447 2.11130 2.16151 2.95622 3.10266 3.60186 3.76069 3.83456 4.07993 4.22047 4.30311 4.41547 4.59799 4.75021 4.90254 4.90462 5.05125 5.05250 5.11253 5.21915 5.45701 5.46381 5.47723 6.05591 6.25157 6.63662 7.08941 8.09226 8.30120 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.070994 B = 0.004276 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.305172 B = 6545.965954 C = 6754.492853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.007 4.007 3 C -0.151 4.151 4 C -0.009 4.009 5 C -0.198 4.198 6 C 0.069 3.931 7 C 0.198 3.802 8 N -0.521 5.521 9 C 0.264 3.736 10 C -0.468 4.468 11 H 0.096 0.904 12 C 0.024 3.976 13 N -0.807 5.807 14 Si 1.014 2.986 15 H -0.255 1.255 16 H -0.261 1.261 17 H -0.255 1.255 18 N -0.447 5.447 19 O 0.038 5.962 20 N -0.351 5.351 21 O 0.137 5.863 22 H 0.057 0.943 23 H 0.094 0.906 24 H 0.056 0.944 25 H 0.131 0.869 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.206 0.794 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 11.901 -11.494 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 C -0.209 4.209 4 C -0.072 4.072 5 C -0.221 4.221 6 C -0.086 4.086 7 C -0.023 4.023 8 N -0.264 5.264 9 C 0.013 3.987 10 C -0.508 4.508 11 H 0.114 0.886 12 C -0.194 4.194 13 N -0.436 5.436 14 Si 0.832 3.168 15 H -0.179 1.179 16 H -0.185 1.185 17 H -0.179 1.179 18 N -0.176 5.176 19 O -0.004 6.004 20 N -0.049 5.049 21 O 0.059 5.941 22 H 0.076 0.924 23 H 0.113 0.887 24 H 0.075 0.925 25 H 0.149 0.851 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.223 0.777 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.058 11.423 -10.164 17.283 hybrid contribution 0.632 -0.888 0.113 1.096 sum -7.426 10.535 -10.051 16.344 Atomic orbital electron populations 1.21929 0.92151 1.02840 1.03941 1.20126 0.97395 0.96472 0.88622 1.21928 1.01495 0.93496 1.03939 1.25231 0.98372 0.96129 0.87500 1.22778 1.04316 1.00308 0.94672 1.19933 1.01533 0.94517 0.92639 1.24884 0.97135 0.93234 0.87010 1.72235 1.20630 1.17442 1.16126 1.22755 0.92946 0.88936 0.94031 1.18917 1.30651 1.10667 0.90569 0.88560 1.27044 0.93714 0.96139 1.02479 1.69933 1.26484 1.19223 1.27943 0.84798 0.79035 0.77612 0.75390 1.17894 1.18482 1.17899 1.75507 1.25316 1.15333 1.01451 1.85264 1.49540 1.29693 1.35898 1.74306 1.10536 1.03220 1.16848 1.84800 1.53582 1.41175 1.14549 0.92400 0.88712 0.92523 0.85110 0.92399 0.92510 0.88716 0.77697 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.18 71.98 0.66 -0.91 16 2 C -0.01 -0.09 3.34 -11.54 -0.04 -0.12 16 3 C -0.15 -1.57 9.18 71.98 0.66 -0.91 16 4 C -0.01 -0.20 5.98 25.00 0.15 -0.05 16 5 C -0.20 -5.58 11.07 22.60 0.25 -5.33 16 6 C 0.07 2.82 7.28 42.92 0.31 3.13 16 7 C 0.20 10.25 8.35 87.42 0.73 10.98 16 8 N -0.52 -30.81 11.62 -305.37 -3.55 -34.36 16 9 C 0.26 16.59 7.67 135.01 1.04 17.62 16 10 C -0.47 -28.19 9.52 23.56 0.22 -27.96 16 11 H 0.10 5.52 7.85 -2.91 -0.02 5.50 16 12 C 0.02 1.33 5.49 85.27 0.47 1.80 16 13 N -0.81 -46.50 11.97 21.82 0.26 -46.24 16 14 Si 1.01 40.37 29.56 68.60 2.03 42.40 16 15 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 16 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 17 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 18 N -0.45 -27.75 10.46 -59.87 -0.63 -28.38 16 19 O 0.04 2.06 11.31 68.94 0.78 2.84 16 20 N -0.35 -13.75 12.12 -49.50 -0.60 -14.35 16 21 O 0.14 4.05 11.18 71.60 0.80 4.85 16 22 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 23 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.13 1.00 8.12 -2.39 -0.02 0.98 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.21 4.53 8.06 -2.91 -0.02 4.50 16 30 H 0.29 14.94 8.29 -92.71 -0.77 14.17 16 Total: -1.00 -77.80 277.76 4.72 -73.08 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: 1.17 Total: 1.89 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 4.45 Total: -1.74 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -4.51 Total: -123.32 kcal Atomic # 8 Polarization: 6.11 SS G_CDS: 1.58 Total: 7.69 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -77.80 4.72 -73.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074107443.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.577 kcal (2) G-P(sol) polarization free energy of solvation -77.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds