Wall clock time and date at job start Mon Mar 30 2020 04:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31396 * 1 3 3 Si 1.86798 * 120.00068 * 2 1 4 4 H 1.48497 * 109.46983 * 275.40889 * 3 2 1 5 5 H 1.48497 * 109.47195 * 35.40602 * 3 2 1 6 6 H 1.48496 * 109.47200 * 155.40646 * 3 2 1 7 7 C 1.38903 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00203 * 336.39650 * 7 2 1 9 9 N 1.37310 * 119.99816 * 156.40240 * 7 2 1 10 10 C 1.36581 * 126.40590 * 140.48513 * 9 7 2 11 11 C 1.50705 * 124.97500 * 359.97438 * 10 9 7 12 12 C 1.53004 * 109.46849 * 90.00053 * 11 10 9 13 13 N 1.46903 * 109.46916 * 179.97438 * 12 11 10 14 14 N 1.30065 * 110.03844 * 180.26187 * 10 9 7 15 15 C 1.35938 * 109.73534 * 359.56511 * 14 10 9 16 16 C 1.39689 * 133.45897 * 180.11984 * 15 14 10 17 17 C 1.37689 * 119.81272 * 180.33461 * 16 15 14 18 18 C 1.38926 * 120.49011 * 359.97438 * 17 16 15 19 19 F 1.35099 * 119.80496 * 180.02562 * 18 17 16 20 20 C 1.38160 * 120.38632 * 359.97438 * 18 17 16 21 21 C 1.38399 * 126.39867 * 320.47890 * 9 7 2 22 22 H 0.96997 * 119.99914 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47233 * 329.99829 * 11 10 9 24 24 H 1.08997 * 109.47011 * 209.99621 * 11 10 9 25 25 H 1.08994 * 109.46941 * 60.00131 * 12 11 10 26 26 H 1.08997 * 109.46961 * 299.99598 * 12 11 10 27 27 H 1.00902 * 110.99922 * 56.04711 * 13 12 11 28 28 H 1.00895 * 111.00084 * 180.02562 * 13 12 11 29 29 H 1.08002 * 120.09228 * 0.30764 * 16 15 14 30 30 H 1.07997 * 119.75363 * 180.02562 * 17 16 15 31 31 H 1.08000 * 120.09623 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.3812 2.1123 -1.3938 5 1 1.5072 2.6170 0.8111 6 1 3.5979 1.4099 0.5827 7 6 2.0084 -1.2030 -0.0005 8 1 1.5362 -2.0993 0.3735 9 7 3.2954 -1.2525 -0.4766 10 6 4.3283 -1.9724 0.0527 11 6 4.2324 -2.8520 1.2727 12 6 3.8469 -4.2709 0.8494 13 7 3.7540 -5.1284 2.0385 14 7 5.4083 -1.7828 -0.6469 15 6 5.1445 -0.9375 -1.6783 16 6 5.9226 -0.4109 -2.7120 17 6 5.3557 0.4493 -3.6255 18 6 4.0144 0.7975 -3.5277 19 9 3.4722 1.6423 -4.4319 20 6 3.2314 0.2842 -2.5117 21 6 3.7883 -0.5823 -1.5826 22 1 -0.4850 0.8400 0.0004 23 1 3.4740 -2.4555 1.9477 24 1 5.1960 -2.8739 1.7815 25 1 4.6054 -4.6673 0.1744 26 1 2.8833 -4.2490 0.3405 27 1 3.1039 -4.7471 2.7094 28 1 3.5009 -6.0717 1.7852 29 1 6.9660 -0.6773 -2.7941 30 1 5.9581 0.8556 -4.4246 31 1 2.1891 0.5578 -2.4403 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075975692.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:35 Heat of formation + Delta-G solvation = 2.048376 kcal Electronic energy + Delta-G solvation = -18016.552799 eV Core-core repulsion = 15018.930966 eV Total energy + Delta-G solvation = -2997.621833 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.097 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.85418 -43.00617 -38.16983 -36.32130 -35.95895 -33.82212 -31.70413 -31.13600 -28.49334 -27.24229 -24.23967 -23.40834 -22.76303 -21.12707 -20.23471 -18.63896 -17.95089 -17.46862 -16.90504 -16.69332 -16.54471 -16.19049 -15.81709 -15.39376 -15.23960 -14.92560 -14.65095 -14.19286 -13.85547 -13.47989 -13.27309 -13.19021 -12.89757 -12.36547 -12.30250 -12.19343 -11.95827 -11.68972 -10.95802 -10.77748 -9.68508 -9.37381 -8.98957 -8.92013 -6.66556 -0.11425 0.50298 1.03342 1.14547 1.22963 1.76607 1.91468 2.17453 2.63514 2.81245 3.20732 3.40091 3.66758 3.89650 4.08110 4.10560 4.20970 4.39104 4.39859 4.47850 4.70428 4.83486 4.96200 5.04770 5.07972 5.17958 5.28599 5.53066 5.71989 5.86948 5.99969 6.13993 6.52797 6.59712 7.04619 7.15360 8.12100 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.019084 B = 0.010495 C = 0.007496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.855432 B = 2667.280700 C = 3734.477676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.243 1.243 5 H -0.265 1.265 6 H -0.278 1.278 7 C -0.367 4.367 8 H 0.107 0.893 9 N -0.319 5.319 10 C 0.229 3.771 11 C -0.022 4.022 12 C 0.083 3.917 13 N -0.844 5.844 14 N -0.521 5.521 15 C 0.007 3.993 16 C -0.038 4.038 17 C -0.155 4.155 18 C 0.080 3.920 19 F -0.144 7.144 20 C -0.155 4.155 21 C 0.004 3.996 22 H 0.294 0.706 23 H 0.082 0.918 24 H 0.105 0.895 25 H 0.071 0.929 26 H 0.013 0.987 27 H 0.348 0.652 28 H 0.354 0.646 29 H 0.166 0.834 30 H 0.176 0.824 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.599 -1.816 -1.419 6.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.149 4.149 3 Si 0.728 3.272 4 H -0.167 1.167 5 H -0.190 1.190 6 H -0.203 1.203 7 C -0.495 4.495 8 H 0.125 0.875 9 N 0.008 4.992 10 C -0.033 4.033 11 C -0.061 4.061 12 C -0.049 4.049 13 N -0.375 5.375 14 N -0.243 5.243 15 C -0.116 4.116 16 C -0.058 4.058 17 C -0.176 4.176 18 C 0.059 3.941 19 F -0.123 7.123 20 C -0.177 4.177 21 C -0.110 4.110 22 H 0.105 0.895 23 H 0.101 0.899 24 H 0.124 0.876 25 H 0.090 0.910 26 H 0.031 0.969 27 H 0.161 0.839 28 H 0.168 0.832 29 H 0.183 0.817 30 H 0.194 0.806 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.709 -1.911 -1.075 8.015 hybrid contribution -2.376 1.216 -0.400 2.698 sum 5.333 -0.695 -1.475 5.577 Atomic orbital electron populations 1.69773 1.07208 1.30705 1.40248 1.25722 0.95493 1.00910 0.92760 0.86478 0.79325 0.80739 0.80634 1.16744 1.18980 1.20349 1.19100 0.86214 0.98066 1.46094 0.87539 1.41561 1.08792 1.31955 1.16881 1.24036 0.81885 0.99081 0.98321 1.19939 1.04419 0.91702 0.90068 1.21439 0.98989 0.91679 0.92817 1.58676 1.58907 1.06183 1.13714 1.70268 1.25840 1.20512 1.07673 1.19509 0.91792 1.01292 0.99033 1.20334 1.00156 0.94784 0.90477 1.20998 0.92256 1.01769 1.02626 1.17262 0.92993 0.94524 0.89350 1.91428 1.86715 1.68791 1.65334 1.19884 1.00264 1.01199 0.96320 1.18867 0.96455 1.03056 0.92662 0.89540 0.89924 0.87630 0.91014 0.96875 0.83906 0.83240 0.81684 0.80623 0.87012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.63 13.96 21.65 0.30 -44.33 16 2 C 0.06 3.29 4.91 84.92 0.42 3.71 16 3 Si 0.90 42.16 24.50 68.60 1.68 43.84 16 4 H -0.24 -11.09 5.50 99.48 0.55 -10.54 16 5 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.37 -19.04 9.69 83.99 0.81 -18.23 16 8 H 0.11 5.67 8.06 -2.91 -0.02 5.64 16 9 N -0.32 -15.70 2.44 -333.11 -0.81 -16.51 16 10 C 0.23 10.15 7.08 137.76 0.98 11.13 16 11 C -0.02 -0.77 5.75 29.85 0.17 -0.60 16 12 C 0.08 2.58 6.77 86.30 0.58 3.16 16 13 N -0.84 -20.44 9.62 -186.71 -1.80 -22.24 16 14 N -0.52 -23.20 11.27 -179.51 -2.02 -25.23 16 15 C 0.01 0.32 7.22 39.42 0.28 0.61 16 16 C -0.04 -1.31 10.10 22.49 0.23 -1.09 16 17 C -0.16 -4.96 9.99 22.30 0.22 -4.73 16 18 C 0.08 3.12 7.29 22.42 0.16 3.28 16 19 F -0.14 -5.35 17.26 44.97 0.78 -4.57 16 20 C -0.15 -7.10 6.87 22.36 0.15 -6.95 16 21 C 0.00 0.20 5.27 38.78 0.20 0.40 16 22 H 0.29 14.20 8.31 -92.71 -0.77 13.43 16 23 H 0.08 2.93 7.79 -2.39 -0.02 2.91 16 24 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 25 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.35 7.73 8.99 -89.69 -0.81 6.92 16 28 H 0.35 7.01 9.08 -89.70 -0.81 6.20 16 29 H 0.17 4.41 8.06 -2.91 -0.02 4.39 16 30 H 0.18 4.00 8.06 -2.91 -0.02 3.97 16 31 H 0.11 5.43 5.80 -2.91 -0.02 5.42 16 Total: -1.00 -59.67 268.30 1.75 -57.92 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -0.59 Total: 20.42 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 4.22 Total: -9.31 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -4.33 Total: -108.31 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.78 Total: -4.57 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.68 Total: 43.84 kcal Total: -59.67 1.75 -57.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075975692.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.970 kcal (2) G-P(sol) polarization free energy of solvation -59.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds