Wall clock time and date at job start Mon Mar 30 2020 04:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00241 * 2 1 4 4 C 1.50698 * 109.47027 * 180.02562 * 3 2 1 5 5 N 1.30094 * 124.97986 * 266.12582 * 4 3 2 6 6 C 1.35904 * 109.73973 * 180.18672 * 5 4 3 7 7 C 1.39681 * 133.47192 * 179.88292 * 6 5 4 8 8 C 1.37920 * 119.75991 * 179.68520 * 7 6 5 9 9 F 1.35097 * 119.77270 * 180.02562 * 8 7 6 10 10 C 1.38923 * 120.45618 * 359.97435 * 8 7 6 11 11 C 1.37932 * 120.42009 * 0.02562 * 10 8 7 12 12 C 1.38714 * 119.86205 * 0.04853 * 11 10 8 13 13 N 1.36521 * 124.97898 * 85.86758 * 4 3 2 14 14 C 1.37302 * 126.40287 * 359.93388 * 13 4 3 15 15 H 1.08001 * 120.00218 * 326.50896 * 14 13 4 16 16 C 1.38911 * 119.99984 * 146.49741 * 14 13 4 17 17 N 1.31379 * 120.00187 * 339.59566 * 16 14 13 18 18 Si 1.86807 * 119.99651 * 159.58980 * 16 14 13 19 19 H 1.48500 * 109.46734 * 90.00494 * 18 16 14 20 20 H 1.48498 * 109.46631 * 210.00344 * 18 16 14 21 21 H 1.48498 * 109.47229 * 330.00550 * 18 16 14 22 22 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46856 * 299.99229 * 1 2 3 24 24 H 1.08997 * 109.47529 * 59.98896 * 1 2 3 25 25 H 1.00896 * 110.99886 * 123.96308 * 2 1 3 26 26 H 1.08999 * 109.46650 * 60.00450 * 3 2 1 27 27 H 1.08996 * 109.47161 * 300.00738 * 3 2 1 28 28 H 1.08006 * 120.12031 * 359.66241 * 7 6 5 29 29 H 1.08001 * 119.79167 * 180.02562 * 10 8 7 30 30 H 1.08001 * 120.07233 * 179.97438 * 11 10 8 31 31 H 0.97004 * 120.00195 * 181.01104 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3311 -0.0006 5 7 4.2499 1.3830 1.0626 6 6 5.5599 1.3280 0.7053 7 6 6.7549 1.3489 1.4283 8 6 7.9597 1.2689 0.7619 9 9 9.1156 1.2885 1.4609 10 6 7.9929 1.1671 -0.6232 11 6 6.8209 1.1454 -1.3502 12 6 5.6006 1.2265 -0.6957 13 7 4.2817 1.2298 -1.1167 14 6 3.8404 1.1467 -2.4142 15 1 2.9152 0.6366 -2.6384 16 6 4.5838 1.7190 -3.4386 17 7 5.4618 2.6580 -3.1677 18 14 4.3351 1.1533 -5.2015 19 1 3.2798 1.9787 -5.8419 20 1 5.6065 1.3045 -5.9538 21 1 3.9215 -0.2729 -5.2100 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5140 -0.8898 25 1 1.8306 -0.5262 0.7813 26 1 1.6461 1.8947 0.8900 27 1 1.6459 1.8948 -0.8899 28 1 6.7354 1.4278 2.5053 29 1 8.9424 1.1047 -1.1341 30 1 6.8533 1.0666 -2.4268 31 1 5.9705 3.0679 -3.8848 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076044011.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:28 Heat of formation + Delta-G solvation = 23.956323 kcal Electronic energy + Delta-G solvation = -17867.373234 eV Core-core repulsion = 14870.701401 eV Total energy + Delta-G solvation = -2996.671833 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.097 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.02703 -40.88252 -36.35611 -35.17058 -34.23746 -31.33626 -29.21630 -29.08493 -26.41609 -25.22775 -23.39499 -21.35743 -21.28491 -19.54271 -17.90451 -17.00446 -16.01111 -15.47880 -15.06814 -14.86535 -14.76417 -14.48497 -13.94454 -13.83334 -13.38874 -13.07693 -12.42177 -12.38973 -11.87108 -11.80583 -11.59048 -11.50647 -11.32628 -11.09922 -10.76100 -10.47353 -10.25306 -9.66972 -8.96292 -8.82117 -8.16945 -7.27678 -7.12807 -6.78319 -4.57593 1.88643 2.45485 2.92059 2.98795 3.04624 3.70962 3.78634 4.36075 4.58100 4.81118 4.85636 5.02298 5.41112 5.50962 5.62777 5.72411 5.84438 5.90575 6.00678 6.04017 6.37627 6.52474 6.63738 6.75669 6.96112 7.06020 7.17332 7.22078 7.39936 7.62846 7.69033 7.93098 8.08832 8.53014 9.08368 9.27306 10.10363 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.010447 C = 0.006523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.574766 B = 2679.526795 C = 4291.678441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.688 5.688 3 C 0.156 3.844 4 C 0.212 3.788 5 N -0.527 5.527 6 C 0.051 3.949 7 C -0.121 4.121 8 C 0.068 3.932 9 F -0.157 7.157 10 C -0.189 4.189 11 C -0.010 4.010 12 C 0.032 3.968 13 N -0.265 5.265 14 C -0.348 4.348 15 H 0.117 0.883 16 C 0.052 3.948 17 N -0.820 5.820 18 Si 0.928 3.072 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.260 1.260 22 H 0.065 0.935 23 H 0.019 0.981 24 H 0.064 0.936 25 H 0.344 0.656 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 -2.651 0.718 4.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.320 5.320 3 C 0.025 3.975 4 C -0.049 4.049 5 N -0.251 5.251 6 C -0.075 4.075 7 C -0.142 4.142 8 C 0.046 3.954 9 F -0.136 7.136 10 C -0.211 4.211 11 C -0.030 4.030 12 C -0.085 4.085 13 N 0.066 4.934 14 C -0.477 4.477 15 H 0.135 0.865 16 C -0.161 4.161 17 N -0.449 5.449 18 Si 0.752 3.248 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.184 1.184 22 H 0.083 0.917 23 H 0.037 0.963 24 H 0.083 0.917 25 H 0.162 0.838 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.464 -2.507 0.593 4.317 hybrid contribution 0.305 0.243 -0.720 0.818 sum -3.159 -2.265 -0.127 3.889 Atomic orbital electron populations 1.22161 0.87957 1.01522 1.00220 1.60347 1.07094 1.14080 1.50459 1.20026 0.85899 0.89882 1.01645 1.22936 0.94171 1.05439 0.82348 1.70129 1.00369 1.26582 1.28034 1.18409 0.91429 1.07036 0.90605 1.19631 0.88754 1.06946 0.98903 1.17062 0.80537 1.08182 0.89577 1.91376 1.47851 1.94830 1.79518 1.20518 0.98289 1.10555 0.91737 1.19899 0.88474 0.95260 0.99332 1.18665 0.86560 1.09833 0.93401 1.41146 1.02845 1.43226 1.06141 1.19837 1.10890 1.37602 0.79360 0.86497 1.25648 0.95392 0.93396 1.01664 1.70047 1.21525 1.17925 1.35419 0.85904 0.78657 0.80169 0.80068 1.19492 1.19951 1.18417 0.91668 0.96290 0.91702 0.83783 0.93129 0.89203 0.86141 0.86127 0.85634 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.70 60.06 0.64 1.03 16 2 N -0.69 -11.38 6.84 -122.42 -0.84 -12.21 16 3 C 0.16 2.91 5.91 -4.98 -0.03 2.88 16 4 C 0.21 4.96 7.34 -154.39 -1.13 3.83 16 5 N -0.53 -12.88 11.27 -8.11 -0.09 -12.97 16 6 C 0.05 1.27 7.22 -84.66 -0.61 0.66 16 7 C -0.12 -2.71 10.07 -39.16 -0.39 -3.10 16 8 C 0.07 1.45 7.28 -39.44 -0.29 1.16 16 9 F -0.16 -3.11 17.26 2.25 0.04 -3.07 16 10 C -0.19 -4.01 10.01 -39.44 -0.39 -4.40 16 11 C -0.01 -0.23 8.56 -39.52 -0.34 -0.57 16 12 C 0.03 0.81 6.16 -83.84 -0.52 0.29 16 13 N -0.26 -6.70 2.86 -56.64 -0.16 -6.87 16 14 C -0.35 -8.56 9.38 -14.85 -0.14 -8.70 16 15 H 0.12 2.76 7.91 -52.49 -0.42 2.35 16 16 C 0.05 1.23 4.52 -17.50 -0.08 1.15 16 17 N -0.82 -20.41 10.61 55.49 0.59 -19.82 16 18 Si 0.93 17.97 29.60 -169.99 -5.03 12.94 16 19 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.02 0.22 8.14 -51.92 -0.42 -0.21 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.34 5.61 8.81 -39.29 -0.35 5.26 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.09 1.68 7.90 -51.93 -0.41 1.27 16 28 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 29 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 30 H 0.13 2.97 6.25 -52.49 -0.33 2.64 16 31 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 LS Contribution 274.77 15.07 4.14 4.14 Total: -1.00 -27.64 274.77 -7.81 -35.44 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -3.17 Total: 8.17 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -3.28 Total: -5.76 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.50 Total: -51.87 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.64 -7.81 -35.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076044011.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.401 kcal (2) G-P(sol) polarization free energy of solvation -27.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds