Wall clock time and date at job start Mon Mar 30 2020 03:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.45936 * 2 1 4 4 O 1.43047 * 109.46229 * 240.01907 * 2 1 3 5 5 C 1.35917 * 116.63147 * 286.03255 * 4 2 1 6 6 C 1.38724 * 120.76452 * 147.31230 * 5 4 2 7 7 C 1.38580 * 118.35348 * 180.12189 * 6 5 4 8 8 C 1.39061 * 119.26794 * 0.02562 * 7 6 5 9 9 N 1.39216 * 119.54238 * 179.97438 * 8 7 6 10 10 N 1.32386 * 120.91851 * 359.97438 * 8 7 6 11 11 C 1.32431 * 121.51060 * 0.02562 * 10 8 7 12 12 N 1.39664 * 120.48010 * 180.08879 * 11 10 8 13 13 C 1.37172 * 120.41842 * 15.42472 * 12 11 10 14 14 H 1.08001 * 120.00094 * 215.23415 * 13 12 11 15 15 C 1.38862 * 120.00061 * 35.23494 * 13 12 11 16 16 N 1.31441 * 119.99854 * 17.50039 * 15 13 12 17 17 Si 1.86797 * 120.00198 * 197.49695 * 15 13 12 18 18 H 1.48500 * 109.47143 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47337 * 119.99930 * 17 15 13 20 20 H 1.48502 * 109.47216 * 240.00095 * 17 15 13 21 21 C 1.35014 * 119.16403 * 195.48065 * 12 11 10 22 22 O 1.21277 * 120.08403 * 181.55111 * 21 12 11 23 23 H 1.08999 * 109.47308 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47495 * 299.98069 * 1 2 3 25 25 H 1.09002 * 109.47507 * 59.97904 * 1 2 3 26 26 H 1.08002 * 120.82057 * 0.40315 * 6 5 4 27 27 H 1.08003 * 120.36550 * 179.97438 * 7 6 5 28 28 H 0.96998 * 120.00171 * 359.97438 * 9 8 7 29 29 H 0.96997 * 119.99960 * 180.02562 * 9 8 7 30 30 H 0.96993 * 119.99547 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 8 2.0066 -0.6740 -1.1683 5 6 1.8932 -2.0284 -1.1792 6 6 1.6665 -2.7119 -2.3648 7 6 1.5567 -4.0926 -2.3178 8 6 1.6756 -4.7428 -1.0944 9 7 1.5656 -6.1296 -1.0405 10 7 1.8918 -4.0615 0.0199 11 6 2.0024 -2.7418 0.0138 12 7 2.2325 -2.0447 1.2020 13 6 2.6573 -2.7078 2.3251 14 1 2.3185 -2.3902 3.3002 15 6 3.5229 -3.7872 2.2084 16 7 4.2028 -3.9673 1.0980 17 14 3.7213 -4.9833 3.6295 18 1 2.8514 -4.5615 4.7567 19 1 3.3315 -6.3464 3.1874 20 1 5.1382 -4.9933 4.0739 21 6 2.0304 -0.7101 1.2315 22 8 2.2519 -0.0840 2.2462 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5135 0.8901 25 1 -0.3634 0.5142 -0.8898 26 1 1.5824 -2.1816 -3.3019 27 1 1.3798 -4.6573 -3.2213 28 1 1.4068 -6.6354 -1.8527 29 1 1.6471 -6.5899 -0.1906 30 1 4.8072 -4.7216 1.0164 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076779053.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:01 Heat of formation + Delta-G solvation = -32.603707 kcal Electronic energy + Delta-G solvation = -18829.282006 eV Core-core repulsion = 15817.784756 eV Total energy + Delta-G solvation = -3011.497250 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.37234 -40.07328 -38.83906 -37.04680 -34.73063 -33.82560 -32.75562 -32.10764 -28.97335 -27.57274 -24.94339 -24.69719 -23.64221 -20.67693 -20.11761 -19.60132 -18.12594 -17.59648 -17.22181 -16.74520 -16.57659 -16.24674 -15.74839 -15.41129 -15.27066 -14.79642 -14.04309 -13.91187 -13.76080 -13.49198 -13.18831 -13.13020 -12.99702 -12.83201 -12.36105 -12.18394 -11.67776 -11.00201 -10.80063 -10.52573 -10.07534 -9.41444 -8.47350 -8.13036 -6.19449 0.32592 0.73756 1.32312 1.36271 1.50118 1.74118 2.04983 2.44244 2.54359 2.92248 3.06941 3.32748 3.40413 3.94953 3.97191 4.05762 4.25688 4.52653 4.68632 4.71682 4.78639 5.04970 5.12816 5.18236 5.36232 5.65093 5.82507 6.12096 6.38059 6.58592 6.67861 6.94399 7.17081 7.57287 7.81176 8.65635 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.013587 C = 0.008550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.791389 B = 2060.266653 C = 3274.058459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.083 3.917 3 H 0.160 0.840 4 O -0.305 6.305 5 C -0.069 4.069 6 C -0.030 4.030 7 C -0.250 4.250 8 C 0.390 3.610 9 N -0.843 5.843 10 N -0.526 5.526 11 C 0.365 3.635 12 N -0.387 5.387 13 C -0.382 4.382 14 H 0.073 0.927 15 C 0.042 3.958 16 N -0.855 5.855 17 Si 0.989 3.011 18 H -0.271 1.271 19 H -0.262 1.262 20 H -0.276 1.276 21 C 0.430 3.570 22 O -0.582 6.582 23 H 0.042 0.958 24 H 0.081 0.919 25 H 0.112 0.888 26 H 0.173 0.827 27 H 0.170 0.830 28 H 0.420 0.580 29 H 0.397 0.603 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 -2.760 -9.927 12.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.023 3.977 3 H 0.177 0.823 4 O -0.220 6.220 5 C -0.119 4.119 6 C -0.056 4.056 7 C -0.276 4.276 8 C 0.151 3.849 9 N -0.390 5.390 10 N -0.250 5.250 11 C 0.133 3.867 12 N -0.098 5.098 13 C -0.508 4.508 14 H 0.091 0.909 15 C -0.166 4.166 16 N -0.488 5.488 17 Si 0.811 3.189 18 H -0.196 1.196 19 H -0.186 1.186 20 H -0.202 1.202 21 C 0.221 3.779 22 O -0.465 6.465 23 H 0.062 0.938 24 H 0.100 0.900 25 H 0.130 0.870 26 H 0.190 0.810 27 H 0.188 0.812 28 H 0.253 0.747 29 H 0.225 0.775 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.534 -2.773 -8.819 11.321 hybrid contribution 0.391 -0.579 0.645 0.951 sum -6.143 -3.352 -8.175 10.761 Atomic orbital electron populations 1.22235 0.91367 1.02741 1.05329 1.22923 0.97525 0.97185 0.80044 0.82295 1.86105 1.80633 1.15870 1.39365 1.19327 1.15008 0.83411 0.94181 1.20850 0.95104 0.93500 0.96139 1.21316 1.14560 0.94024 0.97653 1.18498 0.90781 0.86896 0.88733 1.42002 1.82123 1.01616 1.13211 1.66330 1.20770 1.07130 1.30743 1.18520 0.93964 0.88438 0.85789 1.41593 1.53237 1.05372 1.09617 1.19336 1.29953 1.15689 0.85788 0.90909 1.25921 0.92079 0.98680 0.99901 1.69985 1.21968 1.28379 1.28432 0.85004 0.77792 0.78309 0.77750 1.19592 1.18641 1.20207 1.22208 0.81855 0.82113 0.91710 1.90515 1.54674 1.65519 1.35759 0.93848 0.90041 0.86958 0.80993 0.81229 0.74737 0.77478 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.97 9.30 71.98 0.67 -4.30 16 2 C 0.08 3.25 3.82 29.85 0.11 3.36 16 3 H 0.16 5.32 8.14 -2.39 -0.02 5.30 16 4 O -0.31 -12.43 10.19 -92.61 -0.94 -13.38 16 5 C -0.07 -2.97 5.87 22.67 0.13 -2.83 16 6 C -0.03 -1.00 10.12 22.47 0.23 -0.77 16 7 C -0.25 -7.73 9.93 22.55 0.22 -7.51 16 8 C 0.39 14.74 7.74 132.98 1.03 15.77 16 9 N -0.84 -23.94 9.08 -55.35 -0.50 -24.44 16 10 N -0.53 -25.50 7.50 -189.66 -1.42 -26.92 16 11 C 0.36 18.60 6.14 132.90 0.82 19.42 16 12 N -0.39 -21.99 2.79 -463.54 -1.29 -23.28 16 13 C -0.38 -23.11 8.83 84.01 0.74 -22.37 16 14 H 0.07 4.60 7.74 -2.91 -0.02 4.58 16 15 C 0.04 2.38 4.43 84.90 0.38 2.75 16 16 N -0.86 -48.85 11.25 21.65 0.24 -48.61 16 17 Si 0.99 44.50 29.59 68.60 2.03 46.53 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 21 C 0.43 22.70 6.86 87.62 0.60 23.31 16 22 O -0.58 -33.93 17.00 -3.02 -0.05 -33.98 16 23 H 0.04 1.50 7.81 -2.39 -0.02 1.48 16 24 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.17 4.24 8.06 -2.91 -0.02 4.21 16 27 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 28 H 0.42 8.08 8.82 -92.71 -0.82 7.27 16 29 H 0.40 11.77 8.95 -92.71 -0.83 10.94 16 30 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -76.90 263.94 2.55 -74.36 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.44 Total: 22.91 kcal Atomic # 6 Polarization: 21.89 SS G_CDS: 4.93 Total: 26.82 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -2.98 Total: -123.26 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -1.00 Total: -47.36 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -76.90 2.55 -74.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076779053.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.752 kcal (2) G-P(sol) polarization free energy of solvation -76.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds