Wall clock time and date at job start Mon Mar 30 2020 03:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48501 * 109.47374 * 274.98338 * 3 2 1 5 5 H 1.48502 * 109.47385 * 34.98163 * 3 2 1 6 6 H 1.48497 * 109.47449 * 154.98303 * 3 2 1 7 7 C 1.40045 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00153 * 186.14715 * 7 2 1 9 9 C 1.46371 * 119.99884 * 6.15546 * 7 2 1 10 10 O 1.21692 * 120.00408 * 353.93453 * 9 7 2 11 11 N 1.34781 * 119.99982 * 173.93483 * 9 7 2 12 12 C 1.46494 * 119.99919 * 179.97438 * 11 9 7 13 13 H 1.09002 * 110.35067 * 32.87866 * 12 11 9 14 14 C 1.54354 * 110.30550 * 155.00305 * 12 11 9 15 15 C 1.54344 * 102.39036 * 92.57045 * 14 12 11 16 16 C 1.51359 * 105.17426 * 26.34964 * 15 14 12 17 17 C 1.38224 * 109.76230 * 342.81857 * 16 15 14 18 18 C 1.38466 * 119.86725 * 179.97438 * 17 16 15 19 19 C 1.38152 * 120.27103 * 0.02562 * 18 17 16 20 20 C 1.38170 * 119.96263 * 0.02562 * 19 18 17 21 21 C 1.38377 * 119.90485 * 359.97438 * 20 19 18 22 22 F 1.35109 * 119.91765 * 180.02562 * 21 20 19 23 23 H 0.96998 * 119.99580 * 0.02562 * 1 2 3 24 24 H 0.96997 * 119.99937 * 359.97438 * 11 9 7 25 25 H 1.08997 * 110.82294 * 210.80147 * 14 12 11 26 26 H 1.08998 * 110.81398 * 334.34818 * 14 12 11 27 27 H 1.08998 * 110.30072 * 145.27725 * 15 14 12 28 28 H 1.09008 * 110.30262 * 267.42517 * 15 14 12 29 29 H 1.08005 * 119.86445 * 180.02562 * 18 17 16 30 30 H 1.08000 * 120.02274 * 180.02562 * 19 18 17 31 31 H 1.07999 * 120.04948 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1073 -1.3948 5 1 1.4949 2.6200 0.8027 6 1 3.5870 1.4121 0.5920 7 6 2.0070 -1.2128 0.0005 8 1 3.0824 -1.2155 0.1007 9 6 1.2814 -2.4768 -0.1348 10 8 0.0645 -2.4828 -0.1368 11 7 1.9611 -3.6342 -0.2573 12 6 1.2350 -4.8994 -0.3922 13 1 0.3020 -4.7450 -0.9344 14 6 2.1094 -5.9441 -1.1177 15 6 2.7988 -6.6715 0.0561 16 6 1.8562 -6.5120 1.2296 17 6 0.9574 -5.4939 0.9720 18 6 -0.0053 -5.1696 1.9129 19 6 -0.0710 -5.8591 3.1082 20 6 0.8270 -6.8764 3.3683 21 6 1.7903 -7.2029 2.4301 22 9 2.6682 -8.1980 2.6839 23 1 -0.4849 0.8401 -0.0004 24 1 2.9311 -3.6295 -0.2561 25 1 1.4918 -6.6344 -1.6923 26 1 2.8451 -5.4565 -1.7572 27 1 2.9336 -7.7271 -0.1799 28 1 3.7598 -6.2068 0.2770 29 1 -0.7078 -4.3743 1.7114 30 1 -0.8238 -5.6030 3.8391 31 1 0.7772 -7.4161 4.3025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082275213.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:54 Heat of formation + Delta-G solvation = -65.453577 kcal Electronic energy + Delta-G solvation = -17686.978484 eV Core-core repulsion = 14654.136796 eV Total energy + Delta-G solvation = -3032.841689 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.64404 -39.87169 -37.13219 -35.38688 -32.66691 -31.82223 -30.10869 -28.77661 -26.98977 -25.43564 -22.44675 -21.17104 -20.65397 -19.55591 -17.46597 -16.72405 -16.05615 -15.67623 -15.33983 -15.31706 -14.71568 -14.16461 -13.90259 -13.62381 -13.55546 -12.74286 -12.43200 -12.20561 -11.92955 -11.48499 -11.34293 -11.12080 -10.98027 -10.91073 -10.85671 -10.61847 -10.44945 -10.22319 -8.88566 -8.52866 -8.32356 -7.64902 -7.59740 -6.22963 -4.67097 1.46681 1.48803 3.11911 3.19603 3.22898 3.84372 4.09879 4.43322 4.53159 4.59901 4.82003 4.90488 5.11432 5.32338 5.35316 5.53462 5.61231 5.76094 5.81446 5.95705 6.06866 6.13276 6.14800 6.38536 6.42312 6.51308 6.69965 6.93976 7.21466 7.40791 7.87670 8.03559 8.29514 8.99583 9.47825 10.55510 10.73692 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.031751 B = 0.005930 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.640462 B = 4720.582291 C = 4993.747383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.578 6.578 11 N -0.752 5.752 12 C 0.188 3.812 13 H 0.091 0.909 14 C -0.126 4.126 15 C -0.074 4.074 16 C -0.134 4.134 17 C -0.061 4.061 18 C -0.092 4.092 19 C -0.099 4.099 20 C -0.160 4.160 21 C 0.096 3.904 22 F -0.148 7.148 23 H 0.268 0.732 24 H 0.381 0.619 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 -11.252 2.138 12.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.460 6.460 11 N -0.406 5.406 12 C 0.081 3.919 13 H 0.108 0.892 14 C -0.164 4.164 15 C -0.111 4.111 16 C -0.136 4.136 17 C -0.063 4.063 18 C -0.111 4.111 19 C -0.117 4.117 20 C -0.179 4.179 21 C 0.077 3.923 22 F -0.127 7.127 23 H 0.079 0.921 24 H 0.213 0.787 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.154 0.846 30 H 0.148 0.852 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.648 -11.159 2.126 11.665 hybrid contribution 1.079 0.637 0.290 1.286 sum 3.727 -10.522 2.416 11.422 Atomic orbital electron populations 1.70018 1.07039 1.27278 1.35202 1.25683 0.94595 1.00245 0.92572 0.86377 0.80275 0.81538 0.78691 1.19782 1.20453 1.18914 1.20878 0.94131 0.89559 1.53647 0.91447 1.18240 0.87213 0.82280 0.76211 1.90584 1.13952 1.86295 1.55208 1.46213 1.08454 1.04656 1.81316 1.19948 0.96880 0.85150 0.89901 0.89154 1.22589 0.99381 0.97618 0.96854 1.20964 0.97433 1.01041 0.91648 1.20608 0.99845 0.98206 0.94934 1.21142 0.93422 0.93705 0.98052 1.20996 0.98474 0.99105 0.92526 1.20920 0.98568 0.95118 0.97096 1.20936 0.96780 1.00799 0.99381 1.17272 0.91244 0.89121 0.94689 1.91437 1.67598 1.59192 1.94493 0.92113 0.78667 0.90292 0.89719 0.90875 0.90151 0.84620 0.85204 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.51 11.85 55.55 0.66 -21.85 16 2 C 0.09 2.44 5.49 -17.37 -0.10 2.34 16 3 Si 0.91 19.90 29.56 -169.99 -5.03 14.88 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.55 -15.11 9.53 -35.63 -0.34 -15.45 16 8 H 0.07 1.73 7.86 -52.48 -0.41 1.31 16 9 C 0.56 15.25 7.74 -12.99 -0.10 15.15 16 10 O -0.58 -17.78 14.70 5.20 0.08 -17.70 16 11 N -0.75 -16.28 5.08 -55.33 -0.28 -16.56 16 12 C 0.19 3.52 3.21 -68.04 -0.22 3.31 16 13 H 0.09 1.89 7.56 -51.93 -0.39 1.49 16 14 C -0.13 -1.76 6.67 -25.32 -0.17 -1.93 16 15 C -0.07 -1.01 6.75 -26.86 -0.18 -1.19 16 16 C -0.13 -2.19 6.12 -104.14 -0.64 -2.83 16 17 C -0.06 -1.12 5.77 -104.21 -0.60 -1.72 16 18 C -0.09 -1.70 10.04 -39.53 -0.40 -2.10 16 19 C -0.10 -1.51 10.04 -39.64 -0.40 -1.91 16 20 C -0.16 -2.32 10.02 -39.55 -0.40 -2.72 16 21 C 0.10 1.51 7.30 -39.37 -0.29 1.22 16 22 F -0.15 -2.27 17.25 2.25 0.04 -2.23 16 23 H 0.27 7.15 8.29 -40.82 -0.34 6.82 16 24 H 0.38 7.36 8.61 -40.82 -0.35 7.00 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 1.05 8.14 -51.92 -0.42 0.62 16 29 H 0.14 2.79 8.06 -52.48 -0.42 2.36 16 30 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 277.44 15.07 4.18 4.18 Total: -1.00 -32.42 277.44 -7.42 -39.83 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -3.25 Total: 7.27 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -3.82 Total: -7.82 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.38 Total: -38.41 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.08 Total: -17.70 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.42 -7.42 -39.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082275213.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.619 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds