Wall clock time and date at job start Mon Mar 30 2020 03:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48501 * 109.47374 * 274.98338 * 3 2 1 5 5 H 1.48502 * 109.47385 * 34.98163 * 3 2 1 6 6 H 1.48497 * 109.47449 * 154.98303 * 3 2 1 7 7 C 1.40045 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00153 * 186.14715 * 7 2 1 9 9 C 1.46371 * 119.99884 * 6.15546 * 7 2 1 10 10 O 1.21692 * 120.00408 * 353.93453 * 9 7 2 11 11 N 1.34781 * 119.99982 * 173.93483 * 9 7 2 12 12 C 1.46494 * 119.99919 * 179.97438 * 11 9 7 13 13 H 1.09002 * 110.35067 * 32.87866 * 12 11 9 14 14 C 1.54354 * 110.30550 * 155.00305 * 12 11 9 15 15 C 1.54344 * 102.39036 * 92.57045 * 14 12 11 16 16 C 1.51359 * 105.17426 * 26.34964 * 15 14 12 17 17 C 1.38224 * 109.76230 * 342.81857 * 16 15 14 18 18 C 1.38466 * 119.86725 * 179.97438 * 17 16 15 19 19 C 1.38152 * 120.27103 * 0.02562 * 18 17 16 20 20 C 1.38170 * 119.96263 * 0.02562 * 19 18 17 21 21 C 1.38377 * 119.90485 * 359.97438 * 20 19 18 22 22 F 1.35109 * 119.91765 * 180.02562 * 21 20 19 23 23 H 0.96998 * 119.99580 * 0.02562 * 1 2 3 24 24 H 0.96997 * 119.99937 * 359.97438 * 11 9 7 25 25 H 1.08997 * 110.82294 * 210.80147 * 14 12 11 26 26 H 1.08998 * 110.81398 * 334.34818 * 14 12 11 27 27 H 1.08998 * 110.30072 * 145.27725 * 15 14 12 28 28 H 1.09008 * 110.30262 * 267.42517 * 15 14 12 29 29 H 1.08005 * 119.86445 * 180.02562 * 18 17 16 30 30 H 1.08000 * 120.02274 * 180.02562 * 19 18 17 31 31 H 1.07999 * 120.04948 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1073 -1.3948 5 1 1.4949 2.6200 0.8027 6 1 3.5870 1.4121 0.5920 7 6 2.0070 -1.2128 0.0005 8 1 3.0824 -1.2155 0.1007 9 6 1.2814 -2.4768 -0.1348 10 8 0.0645 -2.4828 -0.1368 11 7 1.9611 -3.6342 -0.2573 12 6 1.2350 -4.8994 -0.3922 13 1 0.3020 -4.7450 -0.9344 14 6 2.1094 -5.9441 -1.1177 15 6 2.7988 -6.6715 0.0561 16 6 1.8562 -6.5120 1.2296 17 6 0.9574 -5.4939 0.9720 18 6 -0.0053 -5.1696 1.9129 19 6 -0.0710 -5.8591 3.1082 20 6 0.8270 -6.8764 3.3683 21 6 1.7903 -7.2029 2.4301 22 9 2.6682 -8.1980 2.6839 23 1 -0.4849 0.8401 -0.0004 24 1 2.9311 -3.6295 -0.2561 25 1 1.4918 -6.6344 -1.6923 26 1 2.8451 -5.4565 -1.7572 27 1 2.9336 -7.7271 -0.1799 28 1 3.7598 -6.2068 0.2770 29 1 -0.7078 -4.3743 1.7114 30 1 -0.8238 -5.6030 3.8391 31 1 0.7772 -7.4161 4.3025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082275213.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:54 Heat of formation + Delta-G solvation = -86.578088 kcal Electronic energy + Delta-G solvation = -17687.894512 eV Core-core repulsion = 14654.136796 eV Total energy + Delta-G solvation = -3033.757716 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.85633 -41.23355 -39.01245 -36.85512 -34.68545 -33.62613 -31.49448 -30.04370 -28.76474 -27.09947 -23.70722 -22.68302 -22.03321 -21.27438 -19.29557 -18.15803 -17.56898 -17.21186 -16.89206 -16.59401 -16.20806 -15.87897 -15.35913 -15.02203 -14.85274 -14.35857 -14.15371 -13.74507 -13.32001 -13.16126 -12.83361 -12.67404 -12.60089 -12.35522 -12.22293 -12.11436 -12.00404 -11.90804 -10.93023 -10.00229 -9.64236 -9.59583 -9.48452 -8.29022 -6.84114 0.16871 0.20739 1.40089 1.40671 1.56333 2.24244 2.46151 2.55781 3.18995 3.27580 3.36724 3.49585 3.75019 3.95431 4.09342 4.16973 4.27338 4.39942 4.58785 4.77236 4.80156 4.92053 4.98425 5.12536 5.17656 5.20095 5.32862 5.38290 5.60258 5.88729 5.94498 6.23409 6.28555 6.88043 7.55819 8.50750 8.68293 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.031751 B = 0.005930 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.640462 B = 4720.582291 C = 4993.747383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.032 3.968 3 Si 0.994 3.006 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.250 1.250 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.542 3.458 10 O -0.624 6.624 11 N -0.740 5.740 12 C 0.180 3.820 13 H 0.055 0.945 14 C -0.112 4.112 15 C -0.069 4.069 16 C -0.133 4.133 17 C -0.089 4.089 18 C -0.121 4.121 19 C -0.094 4.094 20 C -0.147 4.147 21 C 0.091 3.909 22 F -0.142 7.142 23 H 0.274 0.726 24 H 0.395 0.605 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.156 0.844 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.000 -12.218 2.768 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.184 4.184 3 Si 0.814 3.186 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.174 1.174 7 C -0.612 4.612 8 H 0.102 0.898 9 C 0.346 3.654 10 O -0.510 6.510 11 N -0.394 5.394 12 C 0.074 3.926 13 H 0.073 0.927 14 C -0.150 4.150 15 C -0.106 4.106 16 C -0.135 4.135 17 C -0.091 4.091 18 C -0.140 4.140 19 C -0.112 4.112 20 C -0.166 4.166 21 C 0.072 3.928 22 F -0.120 7.120 23 H 0.084 0.916 24 H 0.228 0.772 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.174 0.826 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.997 -12.179 2.751 13.449 hybrid contribution 0.322 0.827 0.137 0.898 sum 5.319 -11.353 2.888 12.865 Atomic orbital electron populations 1.70181 1.09413 1.28842 1.36504 1.26901 0.95470 1.04746 0.91245 0.85056 0.78910 0.75451 0.79188 1.18707 1.19848 1.17372 1.21416 0.95129 0.90441 1.54189 0.89771 1.18544 0.86869 0.84043 0.75902 1.90545 1.15918 1.87405 1.57161 1.45846 1.08987 1.04603 1.79930 1.20147 0.96311 0.85098 0.91044 0.92700 1.22568 0.99021 0.96328 0.97060 1.21041 0.96941 1.02651 0.89968 1.20837 0.99491 0.97122 0.96014 1.21089 0.94812 0.95310 0.97897 1.20960 0.98832 0.99528 0.94691 1.21144 0.99277 0.94673 0.96130 1.21300 0.95240 0.99795 1.00261 1.17408 0.91528 0.89128 0.94720 1.91457 1.67381 1.58807 1.94405 0.91632 0.77151 0.88312 0.88261 0.88205 0.89051 0.88419 0.82646 0.81675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.92 11.85 21.83 0.26 -49.66 16 2 C 0.03 1.76 5.49 85.30 0.47 2.22 16 3 Si 0.99 40.90 29.56 68.60 2.03 42.93 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.58 -32.46 9.53 24.83 0.24 -32.23 16 8 H 0.08 4.29 7.86 -2.91 -0.02 4.27 16 9 C 0.54 31.02 7.74 86.36 0.67 31.69 16 10 O -0.62 -40.86 14.70 -4.32 -0.06 -40.93 16 11 N -0.74 -32.82 5.08 -447.17 -2.27 -35.09 16 12 C 0.18 6.94 3.21 44.92 0.14 7.09 16 13 H 0.05 2.47 7.56 -2.39 -0.02 2.45 16 14 C -0.11 -2.94 6.67 31.51 0.21 -2.73 16 15 C -0.07 -1.69 6.75 30.51 0.21 -1.48 16 16 C -0.13 -4.13 6.12 -19.55 -0.12 -4.25 16 17 C -0.09 -3.34 5.77 -19.60 -0.11 -3.45 16 18 C -0.12 -4.68 10.04 22.30 0.22 -4.46 16 19 C -0.09 -2.81 10.04 22.23 0.22 -2.59 16 20 C -0.15 -3.89 10.02 22.29 0.22 -3.66 16 21 C 0.09 2.64 7.30 22.41 0.16 2.81 16 22 F -0.14 -3.85 17.25 44.97 0.78 -3.08 16 23 H 0.27 15.11 8.29 -92.71 -0.77 14.34 16 24 H 0.39 15.14 8.61 -92.71 -0.80 14.34 16 25 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.10 2.33 8.07 -2.39 -0.02 2.31 16 27 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 30 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 31 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -74.02 277.44 3.63 -70.39 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.37 Total: 26.49 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 2.54 Total: -11.05 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -2.01 Total: -84.75 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.06 Total: -40.93 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.78 Total: -3.08 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -74.02 3.63 -70.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082275213.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.191 kcal (2) G-P(sol) polarization free energy of solvation -74.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds