Wall clock time and date at job start Mon Mar 30 2020 04:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47300 * 44.77246 * 3 2 1 5 5 C 1.36938 * 119.99652 * 264.12055 * 4 3 2 6 6 H 1.08004 * 119.99649 * 198.51184 * 5 4 3 7 7 C 1.38813 * 120.00231 * 18.50514 * 5 4 3 8 8 N 1.31614 * 119.99508 * 17.36984 * 7 5 4 9 9 Si 1.86798 * 119.99912 * 197.37122 * 7 5 4 10 10 H 1.48494 * 109.47468 * 60.00003 * 9 7 5 11 11 H 1.48507 * 109.47047 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46966 * 300.00039 * 9 7 5 13 13 C 1.46495 * 120.00193 * 84.12030 * 4 3 2 14 14 C 1.50704 * 109.47419 * 84.79280 * 13 4 3 15 15 C 1.38140 * 120.01131 * 263.26430 * 14 13 4 16 16 C 1.38224 * 120.09349 * 180.27724 * 15 14 13 17 17 C 1.38538 * 120.12713 * 359.48284 * 16 15 14 18 18 F 1.35101 * 119.98802 * 180.26153 * 17 16 15 19 19 C 1.38300 * 120.02397 * 0.50964 * 17 16 15 20 20 C 1.38891 * 119.89785 * 359.75039 * 19 17 16 21 21 N 1.39668 * 120.06127 * 180.02562 * 20 19 17 22 22 H 1.08998 * 109.47197 * 284.76208 * 3 2 1 23 23 H 1.09002 * 109.46503 * 164.77204 * 3 2 1 24 24 H 0.97009 * 119.99705 * 179.97438 * 8 7 5 25 25 H 1.09000 * 109.47099 * 324.79174 * 13 4 3 26 26 H 1.09003 * 109.47311 * 204.79175 * 13 4 3 27 27 H 1.07993 * 119.95249 * 359.97438 * 15 14 13 28 28 H 1.08006 * 119.93725 * 179.74419 * 16 15 14 29 29 H 1.07996 * 120.04887 * 179.76275 * 19 17 16 30 30 H 0.96999 * 120.00169 * 189.80977 * 21 20 19 31 31 H 0.97010 * 119.99627 * 9.81476 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9796 -0.9728 5 6 3.4401 -2.2398 -0.5613 6 1 4.0674 -2.8594 -1.1852 7 6 2.9822 -2.7209 0.6576 8 7 1.9663 -2.1360 1.2561 9 14 3.8078 -4.1982 1.4483 10 1 5.2387 -3.8904 1.6989 11 1 3.1355 -4.5111 2.7350 12 1 3.7049 -5.3680 0.5394 13 6 3.2183 -0.6118 -2.3856 14 6 4.5433 0.0685 -2.6155 15 6 4.6192 1.4477 -2.6258 16 6 5.8326 2.0734 -2.8422 17 6 6.9783 1.3198 -3.0388 18 9 8.1637 1.9343 -3.2448 19 6 6.9082 -0.0614 -3.0293 20 6 5.6885 -0.6912 -2.8173 21 7 5.6139 -2.0858 -2.8064 22 1 2.9715 -0.2610 0.9937 23 1 2.9708 0.9925 -0.2699 24 1 1.6460 -2.4724 2.1077 25 1 2.4096 0.0675 -2.6550 26 1 3.1592 -1.5094 -3.0011 27 1 3.7285 2.0380 -2.4695 28 1 5.8883 3.1520 -2.8539 29 1 7.8004 -0.6493 -3.1863 30 1 4.7491 -2.5252 -2.8014 31 1 6.4269 -2.6151 -2.8039 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082864494.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:26 Heat of formation + Delta-G solvation = 17.500401 kcal Electronic energy + Delta-G solvation = -17755.582308 eV Core-core repulsion = 14758.630524 eV Total energy + Delta-G solvation = -2996.951783 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.097 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.71743 -40.33658 -37.92096 -36.13457 -35.11060 -33.64460 -31.53867 -29.70915 -28.85305 -26.92309 -23.95075 -23.40890 -21.75665 -19.44860 -18.55937 -17.96075 -17.68124 -17.03561 -16.40910 -16.25272 -15.96294 -15.72165 -15.57581 -15.39826 -14.37321 -14.14076 -13.90763 -13.65894 -13.39805 -13.09905 -13.05274 -12.70895 -12.56257 -12.44804 -12.10247 -11.92006 -11.76576 -11.64280 -11.15996 -10.59342 -9.49605 -8.97556 -8.28019 -7.84768 -5.25453 0.45158 0.76413 1.52191 1.56929 1.60690 2.32353 2.54916 2.63312 2.93358 3.09464 3.35637 3.67268 3.90339 3.98099 4.05209 4.27263 4.33534 4.55505 4.79416 4.87786 5.00938 5.14021 5.28830 5.34301 5.38627 5.52234 5.72796 5.78978 6.12249 6.29994 6.73379 7.07099 7.13551 7.37074 7.81774 8.23718 9.20061 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.022102 B = 0.007720 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.538068 B = 3626.260323 C = 4468.054827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C 0.265 3.735 3 C 0.260 3.740 4 N -0.585 5.585 5 C -0.245 4.245 6 H 0.097 0.903 7 C -0.049 4.049 8 N -0.934 5.934 9 Si 0.960 3.040 10 H -0.278 1.278 11 H -0.310 1.310 12 H -0.280 1.280 13 C 0.189 3.811 14 C -0.182 4.182 15 C -0.040 4.040 16 C -0.218 4.218 17 C 0.120 3.880 18 F -0.152 7.152 19 C -0.248 4.248 20 C 0.258 3.742 21 N -0.860 5.860 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.246 0.754 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.404 0.596 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.672 4.703 -8.602 14.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.234 5.234 2 C -0.053 4.053 3 C 0.130 3.870 4 N -0.305 5.305 5 C -0.375 4.375 6 H 0.115 0.885 7 C -0.244 4.244 8 N -0.581 5.581 9 Si 0.791 3.209 10 H -0.205 1.205 11 H -0.238 1.238 12 H -0.206 1.206 13 C 0.063 3.937 14 C -0.189 4.189 15 C -0.059 4.059 16 C -0.239 4.239 17 C 0.100 3.900 18 F -0.130 7.130 19 C -0.272 4.272 20 C 0.150 3.850 21 N -0.400 5.400 22 H 0.113 0.887 23 H 0.114 0.886 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.162 0.838 28 H 0.161 0.839 29 H 0.155 0.845 30 H 0.236 0.764 31 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 8.980 4.635 -8.486 13.196 hybrid contribution 0.731 -1.360 0.886 1.780 sum 9.711 3.275 -7.601 12.759 Atomic orbital electron populations 1.80808 1.15814 1.14238 1.12564 1.31135 0.96822 0.88013 0.89296 1.18409 0.78642 0.93212 0.96708 1.44176 1.73777 1.09999 1.02549 1.19674 1.23292 0.91861 1.02656 0.88544 1.25479 0.97408 1.00948 1.00575 1.69990 1.25536 1.44487 1.18134 0.85439 0.78137 0.80153 0.77191 1.20467 1.23752 1.20621 1.19708 0.91879 0.97753 0.84330 1.20344 0.96374 0.94253 1.07960 1.20837 0.97491 0.93039 0.94565 1.20966 0.91541 1.00828 1.10572 1.17525 0.80844 0.90635 1.00956 1.91435 1.45590 1.83423 1.92597 1.20497 0.98341 0.93145 1.15250 1.17339 0.92252 0.84987 0.90432 1.42734 1.11720 1.02668 1.82906 0.88670 0.88606 0.94436 0.92514 0.92195 0.83776 0.83940 0.84494 0.76382 0.76766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -27.75 18.54 20.01 0.37 -27.38 16 2 C 0.27 12.19 13.65 89.44 1.22 13.41 16 3 C 0.26 10.43 5.43 84.58 0.46 10.89 16 4 N -0.59 -23.36 2.48 -716.91 -1.78 -25.13 16 5 C -0.25 -10.86 9.43 84.03 0.79 -10.07 16 6 H 0.10 3.89 5.39 -2.91 -0.02 3.88 16 7 C -0.05 -2.41 4.97 84.86 0.42 -1.99 16 8 N -0.93 -49.73 9.27 21.65 0.20 -49.53 16 9 Si 0.96 40.99 29.59 68.60 2.03 43.02 16 10 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.31 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 13 C 0.19 6.12 5.37 85.64 0.46 6.58 16 14 C -0.18 -5.26 5.48 -19.73 -0.11 -5.36 16 15 C -0.04 -1.01 9.67 22.24 0.21 -0.80 16 16 C -0.22 -5.40 10.02 22.34 0.22 -5.18 16 17 C 0.12 3.25 7.30 22.36 0.16 3.41 16 18 F -0.15 -4.14 17.27 44.97 0.78 -3.36 16 19 C -0.25 -6.59 9.88 22.44 0.22 -6.37 16 20 C 0.26 7.20 6.73 38.21 0.26 7.46 16 21 N -0.86 -21.57 8.33 -51.39 -0.43 -22.00 16 22 H 0.10 4.27 6.38 -2.39 -0.02 4.26 16 23 H 0.10 3.05 8.12 -2.39 -0.02 3.03 16 24 H 0.25 13.43 8.31 -92.70 -0.77 12.66 16 25 H 0.06 1.77 8.01 -2.39 -0.02 1.75 16 26 H 0.06 1.91 6.64 -2.39 -0.02 1.89 16 27 H 0.14 3.07 8.05 -2.91 -0.02 3.05 16 28 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 29 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 30 H 0.40 10.82 4.99 -92.71 -0.46 10.35 16 31 H 0.40 8.21 8.86 -92.70 -0.82 7.39 16 Total: -1.00 -58.70 275.56 5.41 -53.29 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.09 Total: 19.12 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 4.33 Total: 11.98 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -1.63 Total: -124.05 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.78 Total: -3.36 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -58.70 5.41 -53.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082864494.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.791 kcal (2) G-P(sol) polarization free energy of solvation -58.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds