Wall clock time and date at job start Mon Mar 30 2020 03:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30626 * 1 3 3 Si 1.86799 * 119.99829 * 2 1 4 4 H 1.48498 * 109.47028 * 239.99703 * 3 2 1 5 5 H 1.48492 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46945 * 119.99880 * 3 2 1 7 7 C 1.40345 * 119.99541 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99238 * 179.97438 * 7 2 1 9 9 C 1.39903 * 120.00569 * 0.02562 * 7 2 1 10 10 N 1.32849 * 126.46597 * 0.02562 * 9 7 2 11 11 N 1.28686 * 109.00376 * 179.71041 * 10 9 7 12 12 C 1.31118 * 109.59049 * 0.43942 * 11 10 9 13 13 C 1.50703 * 126.05883 * 179.82368 * 12 11 10 14 14 H 1.08997 * 109.47253 * 194.69319 * 13 12 11 15 15 N 1.46900 * 109.46951 * 314.69505 * 13 12 11 16 16 C 1.53002 * 109.47281 * 74.69128 * 13 12 11 17 17 C 1.50697 * 109.47341 * 175.00312 * 16 13 12 18 18 C 1.34666 * 125.98861 * 124.99830 * 17 16 13 19 19 N 1.36878 * 106.81597 * 179.75923 * 18 17 16 20 20 H 0.97001 * 126.39983 * 180.23791 * 19 18 17 21 21 C 1.35047 * 107.20842 * 0.24669 * 19 18 17 22 22 N 1.30498 * 108.69562 * 359.97438 * 21 19 18 23 23 O 1.34304 * 107.88745 * 359.56382 * 12 11 10 24 24 H 0.97003 * 120.00419 * 0.02562 * 1 2 3 25 25 H 1.00902 * 111.00403 * 59.99463 * 15 13 12 26 26 H 1.00902 * 111.00059 * 183.95546 * 15 13 12 27 27 H 1.08998 * 109.46700 * 54.99673 * 16 13 12 28 28 H 1.09005 * 109.46798 * 295.00267 * 16 13 12 29 29 H 1.08002 * 126.59556 * 0.03134 * 18 17 16 30 30 H 1.07999 * 125.65412 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.0940 1.6964 -1.2125 5 1 1.2752 2.7464 -0.0006 6 1 3.0939 1.6964 1.2125 7 6 2.0079 -1.2155 0.0005 8 1 3.0879 -1.2154 0.0001 9 6 1.3084 -2.4271 0.0005 10 7 -0.0116 -2.5767 -0.0004 11 7 -0.2910 -3.8329 -0.0062 12 6 0.8194 -4.5302 0.0003 13 6 0.9227 -6.0337 0.0005 14 1 1.9377 -6.3281 0.2672 15 7 -0.0215 -6.5892 0.9791 16 6 0.5861 -6.5682 -1.3931 17 6 0.8079 -8.0584 -1.4266 18 6 -0.0993 -8.9855 -1.7884 19 7 0.5149 -10.2039 -1.6804 20 1 0.1189 -11.0676 -1.8759 21 6 1.7754 -9.9793 -1.2508 22 7 1.9425 -8.6940 -1.0985 23 8 1.8485 -3.6672 0.0010 24 1 -0.4851 0.8400 -0.0004 25 1 -0.9703 -6.3301 0.7537 26 1 0.0737 -7.5916 1.0448 27 1 1.2289 -6.0884 -2.1312 28 1 -0.4569 -6.3508 -1.6234 29 1 -1.1149 -8.8025 -2.1072 30 1 2.5216 -10.7375 -1.0648 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083349227.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:41 Heat of formation + Delta-G solvation = 80.022987 kcal Electronic energy + Delta-G solvation = -17289.590755 eV Core-core repulsion = 14315.270116 eV Total energy + Delta-G solvation = -2974.320639 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.097 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.10386 -41.55952 -36.00469 -33.97230 -33.60544 -32.49403 -30.36415 -29.42788 -27.46672 -25.81953 -23.14250 -22.03780 -21.41251 -20.17632 -19.64777 -18.25262 -17.56053 -16.10706 -15.37758 -15.20398 -15.09522 -14.48321 -14.16826 -14.03429 -13.76220 -13.22776 -13.05844 -12.77911 -12.04417 -11.60918 -11.32895 -11.22159 -10.80569 -10.52238 -10.23726 -10.04156 -9.97116 -9.68142 -9.55621 -8.61482 -8.58700 -8.24154 -7.75867 -6.77501 -4.78216 1.95348 2.87462 3.03315 3.04033 3.05561 3.07455 3.31285 3.80097 4.26727 4.32396 4.52037 4.96438 5.13095 5.21304 5.33408 5.34580 5.70142 5.75758 5.91348 5.99932 6.19435 6.36965 6.66662 6.82983 7.10715 7.24468 7.47503 7.56385 7.67815 7.93002 8.02527 8.13353 8.37393 8.61832 10.15298 10.65398 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.061131 B = 0.004348 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.922394 B = 6438.051812 C = 6623.099287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.073 3.927 3 Si 0.933 3.067 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.427 4.427 8 H 0.094 0.906 9 C 0.290 3.710 10 N -0.360 5.360 11 N -0.270 5.270 12 C 0.023 3.977 13 C 0.228 3.772 14 H 0.095 0.905 15 N -0.830 5.830 16 C -0.065 4.065 17 C 0.012 3.988 18 C -0.058 4.058 19 N -0.573 5.573 20 H 0.418 0.582 21 C 0.181 3.819 22 N -0.483 5.483 23 O -0.271 6.271 24 H 0.284 0.716 25 H 0.347 0.653 26 H 0.338 0.662 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.176 0.824 30 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 -15.787 -3.913 16.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.349 5.349 2 C -0.153 4.153 3 Si 0.756 3.244 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.462 4.462 8 H 0.113 0.887 9 C 0.105 3.895 10 N -0.215 5.215 11 N -0.121 5.121 12 C -0.189 4.189 13 C 0.114 3.886 14 H 0.113 0.887 15 N -0.360 5.360 16 C -0.106 4.106 17 C -0.117 4.117 18 C -0.191 4.191 19 N -0.177 5.177 20 H 0.255 0.745 21 C -0.103 4.103 22 N -0.203 5.203 23 O -0.159 6.159 24 H 0.095 0.905 25 H 0.161 0.839 26 H 0.151 0.849 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.193 0.807 30 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.107 -14.481 -3.093 14.808 hybrid contribution 0.339 -0.975 -1.225 1.602 sum 0.446 -15.456 -4.319 16.055 Atomic orbital electron populations 1.69934 1.07290 1.29416 1.28278 1.25927 0.95090 1.01020 0.93265 0.85966 0.79607 0.78714 0.80113 1.18641 1.19873 1.18605 1.18174 0.94699 0.85686 1.47685 0.88742 1.23754 0.89077 0.83071 0.93569 1.75702 1.10092 1.04318 1.31364 1.74003 1.25391 1.00535 1.12196 1.26097 0.82596 0.93880 1.16353 1.18831 0.97924 0.83114 0.88716 0.88687 1.58623 1.09713 1.15532 1.52180 1.20757 1.02786 0.87436 0.99668 1.20746 0.90175 0.96116 1.04620 1.22584 1.00597 0.84358 1.11568 1.43343 1.12875 1.09148 1.52296 0.74488 1.25057 0.86795 0.95304 1.03180 1.70210 1.26144 1.03661 1.20269 1.84686 1.37996 1.17303 1.75883 0.90457 0.83946 0.84936 0.90074 0.90045 0.80730 0.77719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.01 11.93 55.57 0.66 -19.35 16 2 C 0.07 1.90 5.50 -17.27 -0.10 1.81 16 3 Si 0.93 18.69 29.56 -169.99 -5.03 13.67 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 7 C -0.43 -11.97 9.46 -38.17 -0.36 -12.33 16 8 H 0.09 2.44 7.85 -52.49 -0.41 2.02 16 9 C 0.29 8.75 7.85 -16.49 -0.13 8.62 16 10 N -0.36 -11.15 10.52 30.64 0.32 -10.83 16 11 N -0.27 -7.55 12.11 32.68 0.40 -7.15 16 12 C 0.02 0.57 7.30 -12.58 -0.09 0.48 16 13 C 0.23 4.46 3.33 -68.86 -0.23 4.23 16 14 H 0.10 1.93 8.10 -51.93 -0.42 1.51 16 15 N -0.83 -14.50 9.18 -5.65 -0.05 -14.55 16 16 C -0.07 -1.08 5.41 -27.88 -0.15 -1.23 16 17 C 0.01 0.17 5.53 -82.86 -0.46 -0.29 16 18 C -0.06 -0.60 11.92 -16.56 -0.20 -0.80 16 19 N -0.57 -4.42 6.15 -14.03 -0.09 -4.50 16 20 H 0.42 1.58 8.96 -40.82 -0.37 1.22 16 21 C 0.18 1.75 13.04 -90.37 -1.18 0.57 16 22 N -0.48 -6.88 11.19 -10.88 -0.12 -7.00 16 23 O -0.27 -7.69 10.90 2.99 0.03 -7.66 16 24 H 0.28 6.98 8.29 -40.82 -0.34 6.64 16 25 H 0.35 5.99 8.87 -39.29 -0.35 5.64 16 26 H 0.34 5.03 8.29 -39.29 -0.33 4.70 16 27 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 29 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.21 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 274.96 15.07 4.14 4.14 Total: -1.00 -35.82 274.96 -5.32 -41.14 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -2.70 Total: 11.03 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -2.89 Total: 1.06 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: 1.12 Total: -63.38 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.03 Total: -7.66 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -35.82 -5.32 -41.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083349227.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.159 kcal (2) G-P(sol) polarization free energy of solvation -35.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds