Wall clock time and date at job start Mon Mar 30 2020 03:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30626 * 1 3 3 Si 1.86799 * 119.99829 * 2 1 4 4 H 1.48498 * 109.47028 * 239.99703 * 3 2 1 5 5 H 1.48492 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46945 * 119.99880 * 3 2 1 7 7 C 1.40345 * 119.99541 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99238 * 179.97438 * 7 2 1 9 9 C 1.39903 * 120.00569 * 0.02562 * 7 2 1 10 10 N 1.32849 * 126.46597 * 0.02562 * 9 7 2 11 11 N 1.28686 * 109.00376 * 179.71041 * 10 9 7 12 12 C 1.31118 * 109.59049 * 0.43942 * 11 10 9 13 13 C 1.50703 * 126.05883 * 179.82368 * 12 11 10 14 14 H 1.08997 * 109.47253 * 194.69319 * 13 12 11 15 15 N 1.46900 * 109.46951 * 314.69505 * 13 12 11 16 16 C 1.53002 * 109.47281 * 74.69128 * 13 12 11 17 17 C 1.50697 * 109.47341 * 175.00312 * 16 13 12 18 18 C 1.34666 * 125.98861 * 124.99830 * 17 16 13 19 19 N 1.36878 * 106.81597 * 179.75923 * 18 17 16 20 20 H 0.97001 * 126.39983 * 180.23791 * 19 18 17 21 21 C 1.35047 * 107.20842 * 0.24669 * 19 18 17 22 22 N 1.30498 * 108.69562 * 359.97438 * 21 19 18 23 23 O 1.34304 * 107.88745 * 359.56382 * 12 11 10 24 24 H 0.97003 * 120.00419 * 0.02562 * 1 2 3 25 25 H 1.00902 * 111.00403 * 59.99463 * 15 13 12 26 26 H 1.00902 * 111.00059 * 183.95546 * 15 13 12 27 27 H 1.08998 * 109.46700 * 54.99673 * 16 13 12 28 28 H 1.09005 * 109.46798 * 295.00267 * 16 13 12 29 29 H 1.08002 * 126.59556 * 0.03134 * 18 17 16 30 30 H 1.07999 * 125.65412 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.0940 1.6964 -1.2125 5 1 1.2752 2.7464 -0.0006 6 1 3.0939 1.6964 1.2125 7 6 2.0079 -1.2155 0.0005 8 1 3.0879 -1.2154 0.0001 9 6 1.3084 -2.4271 0.0005 10 7 -0.0116 -2.5767 -0.0004 11 7 -0.2910 -3.8329 -0.0062 12 6 0.8194 -4.5302 0.0003 13 6 0.9227 -6.0337 0.0005 14 1 1.9377 -6.3281 0.2672 15 7 -0.0215 -6.5892 0.9791 16 6 0.5861 -6.5682 -1.3931 17 6 0.8079 -8.0584 -1.4266 18 6 -0.0993 -8.9855 -1.7884 19 7 0.5149 -10.2039 -1.6804 20 1 0.1189 -11.0676 -1.8759 21 6 1.7754 -9.9793 -1.2508 22 7 1.9425 -8.6940 -1.0985 23 8 1.8485 -3.6672 0.0010 24 1 -0.4851 0.8400 -0.0004 25 1 -0.9703 -6.3301 0.7537 26 1 0.0737 -7.5916 1.0448 27 1 1.2289 -6.0884 -2.1312 28 1 -0.4569 -6.3508 -1.6234 29 1 -1.1149 -8.8025 -2.1072 30 1 2.5216 -10.7375 -1.0648 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083349227.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:40 Heat of formation + Delta-G solvation = 47.767386 kcal Electronic energy + Delta-G solvation = -17290.989463 eV Core-core repulsion = 14315.270116 eV Total energy + Delta-G solvation = -2975.719347 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.097 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.73814 -42.91239 -37.49271 -36.09795 -35.68567 -33.41821 -31.57251 -31.34013 -28.93345 -27.61298 -24.85108 -23.57585 -22.83411 -21.84619 -20.81328 -19.64408 -19.06493 -17.84987 -17.29777 -17.21447 -16.14373 -15.93334 -15.63136 -15.28701 -15.04875 -14.68678 -14.41549 -14.08540 -13.61539 -13.35085 -13.05098 -12.99843 -12.48358 -12.44767 -12.05469 -11.87194 -11.43301 -10.92585 -10.85682 -10.76117 -10.03072 -9.75943 -9.28725 -8.74696 -6.95004 0.96425 1.17365 1.39188 1.57447 1.58029 2.06311 2.14968 2.26736 2.36154 2.46844 3.08665 3.58808 3.79993 3.91486 4.01688 4.19213 4.39423 4.45415 4.62359 4.70945 4.88105 4.94599 5.06823 5.12408 5.38587 5.61813 5.75389 6.01511 6.11507 6.23069 6.51382 6.59586 6.66405 7.21166 8.21921 8.47366 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.061131 B = 0.004348 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.922394 B = 6438.051812 C = 6623.099287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.026 3.974 3 Si 1.024 2.976 4 H -0.250 1.250 5 H -0.260 1.260 6 H -0.251 1.251 7 C -0.452 4.452 8 H 0.109 0.891 9 C 0.257 3.743 10 N -0.404 5.404 11 N -0.294 5.294 12 C 0.039 3.961 13 C 0.235 3.765 14 H 0.087 0.913 15 N -0.828 5.828 16 C -0.049 4.049 17 C -0.027 4.027 18 C -0.035 4.035 19 N -0.553 5.553 20 H 0.440 0.560 21 C 0.192 3.808 22 N -0.536 5.536 23 O -0.288 6.288 24 H 0.296 0.704 25 H 0.349 0.651 26 H 0.356 0.644 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.201 0.799 30 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 -16.870 -4.223 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.196 4.196 3 Si 0.840 3.160 4 H -0.174 1.174 5 H -0.184 1.184 6 H -0.175 1.175 7 C -0.487 4.487 8 H 0.127 0.873 9 C 0.072 3.928 10 N -0.258 5.258 11 N -0.142 5.142 12 C -0.175 4.175 13 C 0.121 3.879 14 H 0.105 0.895 15 N -0.362 5.362 16 C -0.091 4.091 17 C -0.155 4.155 18 C -0.171 4.171 19 N -0.158 5.158 20 H 0.282 0.718 21 C -0.093 4.093 22 N -0.256 5.256 23 O -0.176 6.176 24 H 0.107 0.893 25 H 0.163 0.837 26 H 0.171 0.829 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.217 0.783 30 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 0.500 -15.638 -3.410 16.013 hybrid contribution 0.190 -0.819 -1.129 1.408 sum 0.690 -16.457 -4.539 17.085 Atomic orbital electron populations 1.70025 1.09525 1.31465 1.28110 1.27251 0.95986 1.04778 0.91562 0.84668 0.78118 0.72511 0.80739 1.17402 1.18354 1.17521 1.18846 0.95741 0.86160 1.47988 0.87316 1.24362 0.89464 0.84089 0.94842 1.75599 1.10750 1.05662 1.33772 1.73883 1.26201 1.00040 1.14088 1.27374 0.81537 0.95858 1.12719 1.18941 0.98135 0.79418 0.91374 0.89522 1.58506 1.09335 1.16880 1.51456 1.20423 1.02241 0.89892 0.96534 1.20340 0.91820 0.94833 1.08475 1.22817 1.00843 0.84408 1.09019 1.43282 1.12165 1.09480 1.50825 0.71820 1.25730 0.87834 0.94598 1.01158 1.70109 1.27092 1.05979 1.22447 1.84692 1.39054 1.17537 1.76344 0.89306 0.83690 0.82854 0.92549 0.89698 0.78255 0.73985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.11 11.93 21.90 0.26 -42.85 16 2 C 0.03 1.38 5.50 85.39 0.47 1.85 16 3 Si 1.02 37.56 29.56 68.60 2.03 39.59 16 4 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 5 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 6 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 7 C -0.45 -25.96 9.46 23.19 0.22 -25.74 16 8 H 0.11 5.68 7.85 -2.91 -0.02 5.66 16 9 C 0.26 16.15 7.85 84.94 0.67 16.82 16 10 N -0.40 -26.09 10.52 -169.76 -1.79 -27.87 16 11 N -0.29 -17.08 12.11 -164.72 -2.00 -19.07 16 12 C 0.04 2.05 7.30 88.22 0.64 2.70 16 13 C 0.24 9.42 3.33 44.17 0.15 9.56 16 14 H 0.09 3.62 8.10 -2.39 -0.02 3.60 16 15 N -0.83 -28.82 9.18 -171.80 -1.58 -30.40 16 16 C -0.05 -1.67 5.41 29.85 0.16 -1.51 16 17 C -0.03 -0.73 5.53 41.39 0.23 -0.50 16 18 C -0.04 -0.64 11.92 83.09 0.99 0.35 16 19 N -0.55 -6.53 6.15 -198.31 -1.22 -7.75 16 20 H 0.44 1.43 8.96 -92.71 -0.83 0.59 16 21 C 0.19 3.13 13.04 180.26 2.35 5.49 16 22 N -0.54 -14.60 11.19 -188.32 -2.11 -16.71 16 23 O -0.29 -17.05 10.90 -12.21 -0.13 -17.18 16 24 H 0.30 14.65 8.29 -92.71 -0.77 13.88 16 25 H 0.35 12.02 8.87 -89.69 -0.80 11.22 16 26 H 0.36 10.23 8.29 -89.69 -0.74 9.48 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.08 2.73 8.11 -2.38 -0.02 2.71 16 29 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.24 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -82.13 274.96 -1.80 -83.93 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: -1.15 Total: 29.30 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 5.88 Total: 9.02 kcal Atomic # 7 Polarization: -136.23 SS G_CDS: -8.43 Total: -144.65 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.13 Total: -17.18 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Total: -82.13 -1.80 -83.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083349227.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.693 kcal (2) G-P(sol) polarization free energy of solvation -82.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds