Wall clock time and date at job start Mon Mar 30 2020 04:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28396 * 125.16705 * 2 1 4 4 C 1.30696 * 111.26551 * 180.24653 * 3 2 1 5 5 C 1.40411 * 107.94231 * 359.74384 * 4 3 2 6 6 N 1.39343 * 127.43311 * 179.97438 * 5 4 3 7 7 C 1.37354 * 125.16524 * 179.81085 * 2 1 3 8 8 C 1.46335 * 127.00859 * 0.03854 * 7 2 1 9 9 O 1.21752 * 120.00063 * 265.72353 * 8 7 2 10 10 N 1.34782 * 119.99918 * 85.72436 * 8 7 2 11 11 C 1.36892 * 119.99708 * 174.85935 * 10 8 7 12 12 H 1.07994 * 119.99970 * 320.89981 * 11 10 8 13 13 C 1.39000 * 119.99873 * 140.62819 * 11 10 8 14 14 N 1.31405 * 119.99924 * 157.52795 * 13 11 10 15 15 Si 1.86803 * 119.99787 * 337.52653 * 13 11 10 16 16 H 1.48500 * 109.47070 * 94.15073 * 15 13 11 17 17 H 1.48499 * 109.46788 * 214.14779 * 15 13 11 18 18 H 1.48497 * 109.46950 * 334.14805 * 15 13 11 19 19 C 1.46500 * 119.99655 * 354.86131 * 10 8 7 20 20 C 1.47198 * 109.47310 * 85.43144 * 19 10 8 21 21 N 4.79329 * 121.63791 * 235.10206 * 2 1 3 22 22 H 1.09002 * 109.47220 * 274.70276 * 1 2 3 23 23 H 1.08994 * 109.47257 * 34.71050 * 1 2 3 24 24 H 1.09006 * 109.47051 * 154.71137 * 1 2 3 25 25 H 1.08002 * 126.02596 * 179.75049 * 4 3 2 26 26 H 0.97001 * 120.00390 * 180.02562 * 6 5 4 27 27 H 0.97000 * 119.99769 * 0.02562 * 6 5 4 28 28 H 0.96996 * 119.99819 * 180.02562 * 14 13 11 29 29 H 1.09000 * 109.46479 * 205.42611 * 19 10 8 30 30 H 1.09001 * 109.47347 * 325.42311 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2045 1.0496 0.0000 4 6 3.4732 0.7356 -0.0052 5 6 3.5722 -0.6650 -0.0031 6 7 4.7356 -1.4319 -0.0075 7 6 2.2561 -1.1229 0.0037 8 6 1.8081 -2.5159 0.0075 9 8 1.6960 -3.1165 1.0607 10 7 1.5196 -3.1342 -1.1549 11 6 1.2025 -4.4659 -1.1614 12 1 1.7296 -5.1497 -0.5127 13 6 0.1982 -4.9370 -1.9989 14 7 0.1744 -6.2035 -2.3484 15 14 -1.1178 -3.7697 -2.6276 16 1 -0.7188 -3.2443 -3.9580 17 1 -2.4071 -4.4964 -2.7488 18 1 -1.2735 -2.6406 -1.6758 19 6 1.5455 -2.3811 -2.4112 20 6 2.9191 -2.3550 -2.9395 21 7 3.9793 -2.3348 -3.3471 22 1 -0.3634 0.0843 1.0242 23 1 -0.3633 0.8447 -0.5851 24 1 -0.3633 -0.9292 -0.4390 25 1 4.2997 1.4309 -0.0102 26 1 4.6783 -2.4002 -0.0058 27 1 5.6028 -0.9974 -0.0123 28 1 -0.5262 -6.5322 -2.9331 29 1 0.8867 -2.8602 -3.1355 30 1 1.2062 -1.3611 -2.2304 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083745037.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:59 Heat of formation + Delta-G solvation = 98.833848 kcal Electronic energy + Delta-G solvation = -18521.325920 eV Core-core repulsion = 15547.820982 eV Total energy + Delta-G solvation = -2973.504939 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.097 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.97388 -38.79521 -36.20870 -34.86427 -34.61466 -32.48135 -32.04308 -29.15729 -27.84101 -26.39629 -25.36885 -21.95787 -20.98179 -19.21031 -18.59589 -17.29374 -16.74988 -16.31911 -15.94378 -15.51423 -15.38625 -14.41825 -14.15862 -13.79735 -13.55983 -13.22159 -12.82366 -12.63358 -12.54721 -12.48146 -12.27494 -11.89757 -11.56495 -11.02212 -10.75713 -10.60446 -10.41953 -10.15472 -9.44432 -9.00846 -8.69843 -8.17071 -7.04385 -6.63068 -4.25341 2.19479 2.61391 2.83804 3.01637 3.03406 3.04415 3.16313 3.28591 3.47546 3.91362 4.24916 4.30816 4.47956 4.82699 4.93319 5.20355 5.30469 5.41946 5.42872 5.59937 5.64103 5.74792 5.94670 6.60205 7.11029 7.28868 7.83644 7.95708 8.03123 8.10433 8.20056 8.48390 8.64924 8.99100 9.41285 10.47847 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.023831 B = 0.010014 C = 0.009016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.667259 B = 2795.511704 C = 3104.888834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.275 5.275 3 N -0.270 5.270 4 C -0.051 4.051 5 C 0.134 3.866 6 N -0.855 5.855 7 C -0.102 4.102 8 C 0.548 3.452 9 O -0.533 6.533 10 N -0.447 5.447 11 C -0.327 4.327 12 H 0.111 0.889 13 C 0.067 3.933 14 N -0.846 5.846 15 Si 0.861 3.139 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.257 1.257 19 C 0.184 3.816 20 C 0.207 3.793 21 N -0.432 5.432 22 H 0.082 0.918 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.177 0.823 26 H 0.400 0.600 27 H 0.399 0.601 28 H 0.279 0.721 29 H 0.115 0.885 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.094 11.510 0.073 11.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.068 5.068 3 N -0.102 5.102 4 C -0.232 4.232 5 C 0.022 3.978 6 N -0.398 5.398 7 C -0.232 4.232 8 C 0.335 3.665 9 O -0.410 6.410 10 N -0.170 5.170 11 C -0.453 4.453 12 H 0.128 0.872 13 C -0.142 4.142 14 N -0.480 5.480 15 Si 0.687 3.313 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.181 1.181 19 C 0.057 3.943 20 C -0.113 4.113 21 N -0.111 5.111 22 H 0.101 0.899 23 H 0.111 0.889 24 H 0.113 0.887 25 H 0.194 0.806 26 H 0.229 0.771 27 H 0.227 0.773 28 H 0.089 0.911 29 H 0.132 0.868 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.363 11.948 -0.061 11.954 hybrid contribution -0.306 -0.449 -0.328 0.635 sum 0.057 11.499 -0.389 11.506 Atomic orbital electron populations 1.22133 0.73464 1.05026 1.04417 1.45071 1.06694 1.01515 1.53535 1.72748 1.03457 1.14370 1.19628 1.22991 0.93658 0.92612 1.13916 1.17952 0.86305 0.91095 1.02429 1.41186 1.03736 1.08004 1.86856 1.20860 0.90158 0.89577 1.22638 1.16766 0.82217 0.83311 0.84244 1.90747 1.53563 1.66460 1.30271 1.43568 1.61749 1.10043 1.01634 1.19025 1.19362 0.80214 1.26734 0.87174 1.25411 0.96898 0.95924 0.95959 1.69739 1.32334 1.14826 1.31115 0.87192 0.82857 0.82170 0.79100 1.19517 1.20268 1.18135 1.19486 0.86239 0.98865 0.89730 1.29751 0.95613 0.92606 0.93288 1.81010 1.11875 1.09058 1.09171 0.89932 0.88852 0.88728 0.80555 0.77144 0.77342 0.91068 0.86774 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 11.12 59.85 0.67 1.85 16 2 N -0.27 -4.57 3.55 -63.70 -0.23 -4.80 16 3 N -0.27 -4.36 11.87 30.72 0.36 -4.00 16 4 C -0.05 -0.78 12.05 -17.22 -0.21 -0.98 16 5 C 0.13 2.31 7.48 -83.22 -0.62 1.69 16 6 N -0.85 -13.08 9.12 32.72 0.30 -12.78 16 7 C -0.10 -1.93 4.85 -81.72 -0.40 -2.33 16 8 C 0.55 12.20 6.68 -13.00 -0.09 12.12 16 9 O -0.53 -13.86 17.04 5.14 0.09 -13.77 16 10 N -0.45 -9.91 2.10 -119.54 -0.25 -10.16 16 11 C -0.33 -8.40 9.29 -15.01 -0.14 -8.54 16 12 H 0.11 3.22 7.99 -52.49 -0.42 2.80 16 13 C 0.07 1.66 5.26 -17.45 -0.09 1.57 16 14 N -0.85 -22.45 13.96 55.50 0.77 -21.68 16 15 Si 0.86 17.48 25.20 -169.99 -4.28 13.19 16 16 H -0.27 -4.99 6.64 56.52 0.38 -4.62 16 17 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.26 -4.83 6.73 56.52 0.38 -4.45 16 19 C 0.18 3.47 4.31 -6.83 -0.03 3.44 16 20 C 0.21 4.05 15.48 -20.76 -0.32 3.73 16 21 N -0.43 -8.75 18.54 42.15 0.78 -7.97 16 22 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.09 1.32 7.30 -51.93 -0.38 0.94 16 25 H 0.18 2.10 8.06 -52.49 -0.42 1.68 16 26 H 0.40 6.73 8.86 -40.82 -0.36 6.37 16 27 H 0.40 4.81 8.96 -40.82 -0.37 4.44 16 28 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.11 2.15 3.73 -51.93 -0.19 1.95 16 30 H 0.10 1.60 6.92 -51.93 -0.36 1.24 16 LS Contribution 274.77 15.07 4.14 4.14 Total: -1.00 -30.66 274.77 -2.07 -32.73 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -2.53 Total: 12.56 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: -1.23 Total: 12.54 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 1.74 Total: -61.39 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.77 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -4.28 Total: 13.19 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.66 -2.07 -32.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083745037.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.566 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds