Wall clock time and date at job start Mon Mar 30 2020 04:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 11 11 N 1.46902 * 109.46927 * 299.99200 * 9 7 2 12 12 C 1.50706 * 109.47294 * 179.97438 * 9 7 2 13 13 C 1.38245 * 119.89210 * 79.99411 * 12 9 7 14 14 C 1.38343 * 120.22095 * 179.97438 * 13 12 9 15 15 C 1.38471 * 119.71117 * 359.97438 * 14 13 12 16 16 C 1.38753 * 120.06305 * 0.03675 * 15 14 13 17 17 C 1.38338 * 119.88817 * 259.72343 * 12 9 7 18 18 O 1.36471 * 119.60273 * 179.97438 * 16 15 14 19 19 C 1.42903 * 115.91569 * 291.73351 * 18 16 15 20 20 C 1.52065 * 110.77556 * 84.42483 * 19 18 16 21 21 C 1.52068 * 112.37756 * 295.17579 * 20 19 18 22 22 O 1.36464 * 120.31160 * 180.02562 * 15 14 13 23 23 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 24 24 H 1.00901 * 111.00140 * 176.04487 * 11 9 7 25 25 H 1.00896 * 111.00210 * 300.00212 * 11 9 7 26 26 H 1.08005 * 119.89881 * 359.95015 * 13 12 9 27 27 H 1.07995 * 120.14779 * 180.02562 * 14 13 12 28 28 H 1.07997 * 120.15031 * 0.02562 * 17 12 9 29 29 H 1.08999 * 109.22016 * 324.09053 * 19 18 16 30 30 H 1.08999 * 109.21796 * 204.75922 * 19 18 16 31 31 H 1.08998 * 108.90466 * 174.42734 * 20 19 18 32 32 H 1.09002 * 108.82791 * 55.87199 * 20 19 18 33 33 H 1.09003 * 109.21701 * 304.46346 * 21 20 19 34 34 H 1.08999 * 109.21846 * 185.12839 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 7 0.4062 -2.5767 1.1998 12 6 2.2304 -3.6446 0.0005 13 6 2.8364 -4.0329 1.1808 14 6 3.7361 -5.0839 1.1887 15 6 4.0274 -5.7468 0.0085 16 6 3.4193 -5.3568 -1.1762 17 6 2.5158 -4.3076 -1.1796 18 8 3.7137 -6.0164 -2.3341 19 6 5.0408 -5.8392 -2.8336 20 6 6.0022 -6.8107 -2.1672 21 6 6.1477 -6.5501 -0.6761 22 8 4.9126 -6.7854 0.0023 23 1 -0.4850 -0.8401 -0.0004 24 1 -0.1577 -3.4134 1.1913 25 1 0.9640 -2.5251 2.0390 26 1 2.6072 -3.5140 2.0999 27 1 4.2085 -5.3865 2.1115 28 1 2.0387 -4.0059 -2.1003 29 1 5.3663 -4.8184 -2.6335 30 1 5.0451 -6.0118 -3.9099 31 1 6.9806 -6.7188 -2.6387 32 1 5.6342 -7.8262 -2.3139 33 1 6.4505 -5.5146 -0.5207 34 1 6.9123 -7.2117 -0.2691 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084485546.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:07 Heat of formation + Delta-G solvation = -53.298810 kcal Electronic energy + Delta-G solvation = -18258.232951 eV Core-core repulsion = 15349.378637 eV Total energy + Delta-G solvation = -2908.854314 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.59096 -37.83837 -37.25828 -34.66119 -32.66181 -31.22041 -30.24849 -28.26197 -26.61284 -25.37386 -22.68536 -22.50176 -21.51419 -20.27598 -18.21732 -17.06477 -16.73317 -16.18163 -15.31282 -15.28770 -14.90978 -14.27428 -13.99582 -13.73886 -13.64487 -13.61455 -13.28885 -12.70469 -12.17442 -11.87554 -11.53037 -11.29268 -10.99285 -10.76757 -10.72776 -10.37483 -10.30414 -10.06279 -9.70583 -8.89632 -8.41424 -8.33681 -7.87348 -7.49754 -6.21407 -4.05392 1.51582 1.64845 3.45527 3.46798 3.61373 3.64702 3.66410 4.25089 4.58106 4.58380 4.68713 5.04482 5.16197 5.23448 5.30704 5.41259 5.47040 5.55347 5.61584 5.75459 5.85316 5.86008 5.89292 6.05983 6.22240 6.65784 6.67701 6.80709 7.02607 7.26851 7.33454 7.84332 7.92945 8.24393 8.60565 8.72079 9.01306 9.78373 11.18390 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.030756 B = 0.005954 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.161894 B = 4701.862352 C = 4941.038760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.039 3.961 3 Si 1.064 2.936 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.610 4.610 8 H 0.046 0.954 9 C 0.237 3.763 10 H 0.041 0.959 11 N -0.829 5.829 12 C -0.055 4.055 13 C -0.113 4.113 14 C -0.116 4.116 15 C 0.036 3.964 16 C 0.063 3.937 17 C -0.118 4.118 18 O -0.323 6.323 19 C 0.059 3.941 20 C -0.184 4.184 21 C 0.059 3.941 22 O -0.322 6.322 23 H 0.290 0.710 24 H 0.304 0.696 25 H 0.326 0.674 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.999 -11.336 -1.891 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.171 4.171 3 Si 0.893 3.107 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.649 4.649 8 H 0.064 0.936 9 C 0.128 3.872 10 H 0.058 0.942 11 N -0.356 5.356 12 C -0.057 4.057 13 C -0.132 4.132 14 C -0.135 4.135 15 C -0.008 4.008 16 C 0.020 3.980 17 C -0.137 4.137 18 O -0.239 6.239 19 C -0.016 4.016 20 C -0.222 4.222 21 C -0.016 4.016 22 O -0.239 6.239 23 H 0.103 0.897 24 H 0.114 0.886 25 H 0.140 0.860 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.147 0.853 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.291 -9.304 -2.188 14.045 hybrid contribution 1.224 -2.416 0.127 2.712 sum 11.516 -11.720 -2.061 16.560 Atomic orbital electron populations 1.70552 1.06819 1.32845 1.41981 1.25626 0.96596 1.01805 0.93095 0.83644 0.74945 0.75801 0.76335 1.20815 1.21712 1.21614 1.21646 0.93354 0.90321 1.59532 0.93552 1.18395 0.88001 0.90327 0.90441 0.94174 1.59456 1.28479 1.42440 1.05244 1.21500 0.97080 0.95730 0.91426 1.20922 0.97053 0.96273 0.98928 1.20990 1.00126 0.95318 0.97042 1.18962 0.96061 0.92458 0.93290 1.19144 0.99333 0.94488 0.85070 1.21041 0.99776 0.93329 0.99541 1.86330 1.30443 1.69042 1.38116 1.22565 0.81942 0.98560 0.98507 1.22454 1.00692 1.02215 0.96839 1.22560 0.85607 1.01644 0.91829 1.86325 1.26518 1.35513 1.75528 0.89716 0.88566 0.86012 0.85533 0.85630 0.85275 0.92471 0.88281 0.89617 0.90155 0.92642 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.50 55.43 0.75 -25.63 16 2 C 0.04 1.09 5.39 -17.82 -0.10 0.99 16 3 Si 1.06 24.86 29.90 -169.99 -5.08 19.78 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.61 -16.58 8.70 -34.44 -0.30 -16.88 16 8 H 0.05 1.28 7.74 -52.48 -0.41 0.87 16 9 C 0.24 5.71 2.46 -70.01 -0.17 5.54 16 10 H 0.04 1.05 7.86 -51.93 -0.41 0.64 16 11 N -0.83 -18.47 7.62 -6.65 -0.05 -18.52 16 12 C -0.05 -1.15 4.89 -104.58 -0.51 -1.66 16 13 C -0.11 -2.12 9.28 -39.54 -0.37 -2.49 16 14 C -0.12 -1.99 10.01 -39.46 -0.39 -2.38 16 15 C 0.04 0.64 5.73 -39.31 -0.23 0.41 16 16 C 0.06 1.18 5.73 -39.31 -0.23 0.95 16 17 C -0.12 -2.35 9.62 -39.46 -0.38 -2.73 16 18 O -0.32 -5.55 10.16 -36.71 -0.37 -5.92 16 19 C 0.06 0.76 6.51 36.68 0.24 1.00 16 20 C -0.18 -1.97 5.92 -27.68 -0.16 -2.14 16 21 C 0.06 0.71 6.51 36.68 0.24 0.95 16 22 O -0.32 -5.22 10.16 -36.68 -0.37 -5.59 16 23 H 0.29 8.61 6.40 -40.82 -0.26 8.35 16 24 H 0.30 6.00 9.06 -39.29 -0.36 5.65 16 25 H 0.33 6.94 7.33 -39.29 -0.29 6.65 16 26 H 0.13 2.26 6.65 -52.48 -0.35 1.91 16 27 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.13 2.53 8.04 -52.49 -0.42 2.11 16 29 H 0.06 0.74 7.93 -51.93 -0.41 0.33 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.67 7.93 -51.93 -0.41 0.26 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 282.99 15.07 4.26 4.26 Total: -1.00 -31.14 282.99 -7.45 -38.59 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -4.22 Total: 11.46 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -2.36 Total: -18.44 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.70 Total: -44.15 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -0.75 Total: -11.51 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.14 -7.45 -38.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084485546.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.711 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds