Wall clock time and date at job start Mon Mar 30 2020 04:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 11 11 N 1.46902 * 109.46927 * 299.99200 * 9 7 2 12 12 C 1.50706 * 109.47294 * 179.97438 * 9 7 2 13 13 C 1.38245 * 119.89210 * 79.99411 * 12 9 7 14 14 C 1.38343 * 120.22095 * 179.97438 * 13 12 9 15 15 C 1.38471 * 119.71117 * 359.97438 * 14 13 12 16 16 C 1.38753 * 120.06305 * 0.03675 * 15 14 13 17 17 C 1.38338 * 119.88817 * 259.72343 * 12 9 7 18 18 O 1.36471 * 119.60273 * 179.97438 * 16 15 14 19 19 C 1.42903 * 115.91569 * 291.73351 * 18 16 15 20 20 C 1.52065 * 110.77556 * 84.42483 * 19 18 16 21 21 C 1.52068 * 112.37756 * 295.17579 * 20 19 18 22 22 O 1.36464 * 120.31160 * 180.02562 * 15 14 13 23 23 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 24 24 H 1.00901 * 111.00140 * 176.04487 * 11 9 7 25 25 H 1.00896 * 111.00210 * 300.00212 * 11 9 7 26 26 H 1.08005 * 119.89881 * 359.95015 * 13 12 9 27 27 H 1.07995 * 120.14779 * 180.02562 * 14 13 12 28 28 H 1.07997 * 120.15031 * 0.02562 * 17 12 9 29 29 H 1.08999 * 109.22016 * 324.09053 * 19 18 16 30 30 H 1.08999 * 109.21796 * 204.75922 * 19 18 16 31 31 H 1.08998 * 108.90466 * 174.42734 * 20 19 18 32 32 H 1.09002 * 108.82791 * 55.87199 * 20 19 18 33 33 H 1.09003 * 109.21701 * 304.46346 * 21 20 19 34 34 H 1.08999 * 109.21846 * 185.12839 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 7 0.4062 -2.5767 1.1998 12 6 2.2304 -3.6446 0.0005 13 6 2.8364 -4.0329 1.1808 14 6 3.7361 -5.0839 1.1887 15 6 4.0274 -5.7468 0.0085 16 6 3.4193 -5.3568 -1.1762 17 6 2.5158 -4.3076 -1.1796 18 8 3.7137 -6.0164 -2.3341 19 6 5.0408 -5.8392 -2.8336 20 6 6.0022 -6.8107 -2.1672 21 6 6.1477 -6.5501 -0.6761 22 8 4.9126 -6.7854 0.0023 23 1 -0.4850 -0.8401 -0.0004 24 1 -0.1577 -3.4134 1.1913 25 1 0.9640 -2.5251 2.0390 26 1 2.6072 -3.5140 2.0999 27 1 4.2085 -5.3865 2.1115 28 1 2.0387 -4.0059 -2.1003 29 1 5.3663 -4.8184 -2.6335 30 1 5.0451 -6.0118 -3.9099 31 1 6.9806 -6.7188 -2.6387 32 1 5.6342 -7.8262 -2.3139 33 1 6.4505 -5.5146 -0.5207 34 1 6.9123 -7.2117 -0.2691 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084485546.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:07 Heat of formation + Delta-G solvation = -74.381822 kcal Electronic energy + Delta-G solvation = -18259.147179 eV Core-core repulsion = 15349.378637 eV Total energy + Delta-G solvation = -2909.768542 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.88343 -39.29583 -38.49430 -36.38235 -33.93639 -33.03409 -31.70562 -29.75395 -27.86847 -27.16315 -24.39353 -23.92216 -22.57010 -21.87299 -19.46298 -18.94381 -18.01198 -17.66160 -16.89691 -16.41496 -16.25730 -15.92146 -15.48480 -15.14064 -15.05063 -14.97198 -14.72773 -14.10143 -13.89481 -13.36039 -12.97385 -12.77304 -12.59457 -12.27016 -12.14931 -11.89038 -11.82451 -11.40815 -10.99263 -10.79240 -10.48388 -9.83852 -9.54961 -9.16863 -8.38938 -6.25784 0.09758 0.20258 1.56640 1.63853 1.83073 2.30437 2.45527 2.64914 2.86364 3.31472 3.68866 3.70190 3.87745 4.02486 4.17973 4.18819 4.29718 4.33527 4.35243 4.35922 4.46298 4.64419 4.74360 4.86044 5.02303 5.06409 5.18109 5.23814 5.53962 5.65764 5.91636 6.09485 6.20371 6.54300 6.65507 6.77122 7.02661 7.65645 8.97525 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.030756 B = 0.005954 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.161894 B = 4701.862352 C = 4941.038760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.009 4.009 3 Si 1.109 2.891 4 H -0.286 1.286 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.616 4.616 8 H 0.038 0.962 9 C 0.243 3.757 10 H 0.008 0.992 11 N -0.834 5.834 12 C -0.075 4.075 13 C -0.115 4.115 14 C -0.109 4.109 15 C 0.042 3.958 16 C 0.062 3.938 17 C -0.134 4.134 18 O -0.342 6.342 19 C 0.046 3.954 20 C -0.178 4.178 21 C 0.047 3.953 22 O -0.334 6.334 23 H 0.278 0.722 24 H 0.319 0.681 25 H 0.333 0.667 26 H 0.134 0.866 27 H 0.157 0.843 28 H 0.118 0.882 29 H 0.051 0.949 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.576 -12.400 -1.559 18.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.213 4.213 3 Si 0.932 3.068 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.655 4.655 8 H 0.056 0.944 9 C 0.133 3.867 10 H 0.025 0.975 11 N -0.363 5.363 12 C -0.078 4.078 13 C -0.133 4.133 14 C -0.127 4.127 15 C -0.002 4.002 16 C 0.019 3.981 17 C -0.154 4.154 18 O -0.259 6.259 19 C -0.028 4.028 20 C -0.216 4.216 21 C -0.027 4.027 22 O -0.252 6.252 23 H 0.090 0.910 24 H 0.130 0.870 25 H 0.147 0.853 26 H 0.152 0.848 27 H 0.174 0.826 28 H 0.136 0.864 29 H 0.070 0.930 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.890 -10.397 -1.860 16.664 hybrid contribution 0.527 -2.250 -0.051 2.311 sum 13.417 -12.646 -1.911 18.536 Atomic orbital electron populations 1.70669 1.07756 1.32174 1.44663 1.26965 0.96675 1.05389 0.92305 0.83047 0.74158 0.72103 0.77474 1.21149 1.20262 1.19847 1.21940 0.93147 0.91913 1.58471 0.94359 1.18041 0.88189 0.90732 0.89736 0.97463 1.59212 1.28643 1.43586 1.04875 1.21153 0.97959 0.95779 0.92884 1.20968 0.97190 0.96946 0.98193 1.21233 0.99099 0.94238 0.98107 1.19082 0.96003 0.92184 0.92946 1.19156 0.98845 0.93933 0.86212 1.20997 1.00838 0.94586 0.98943 1.86284 1.33187 1.68763 1.37692 1.22961 0.80451 0.99140 1.00208 1.22441 1.01947 1.01185 0.96010 1.22957 0.84350 1.02692 0.92662 1.86293 1.27654 1.34929 1.76286 0.91006 0.86967 0.85265 0.84850 0.82577 0.86374 0.93002 0.85699 0.85735 0.90273 0.92667 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.70 13.50 21.45 0.29 -55.41 16 2 C -0.01 -0.53 5.39 84.65 0.46 -0.08 16 3 Si 1.11 50.10 29.90 68.60 2.05 52.15 16 4 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.62 -34.12 8.70 25.60 0.22 -33.90 16 8 H 0.04 2.13 7.74 -2.91 -0.02 2.11 16 9 C 0.24 12.06 2.46 43.42 0.11 12.17 16 10 H 0.01 0.42 7.86 -2.39 -0.02 0.40 16 11 N -0.83 -37.97 7.62 -174.95 -1.33 -39.30 16 12 C -0.08 -3.20 4.89 -19.84 -0.10 -3.30 16 13 C -0.11 -4.21 9.28 22.30 0.21 -4.00 16 14 C -0.11 -3.50 10.01 22.35 0.22 -3.27 16 15 C 0.04 1.41 5.73 22.45 0.13 1.54 16 16 C 0.06 2.30 5.73 22.45 0.13 2.42 16 17 C -0.13 -5.51 9.62 22.35 0.22 -5.29 16 18 O -0.34 -11.47 10.16 -84.21 -0.86 -12.33 16 19 C 0.05 1.09 6.51 71.67 0.47 1.56 16 20 C -0.18 -3.19 5.92 29.98 0.18 -3.01 16 21 C 0.05 0.98 6.51 71.67 0.47 1.44 16 22 O -0.33 -9.91 10.16 -84.13 -0.85 -10.77 16 23 H 0.28 17.10 6.40 -92.71 -0.59 16.50 16 24 H 0.32 12.86 9.06 -89.69 -0.81 12.04 16 25 H 0.33 14.26 7.33 -89.70 -0.66 13.60 16 26 H 0.13 4.63 6.65 -2.91 -0.02 4.61 16 27 H 0.16 4.03 8.06 -2.91 -0.02 4.00 16 28 H 0.12 4.92 8.04 -2.91 -0.02 4.90 16 29 H 0.05 1.26 7.93 -2.39 -0.02 1.25 16 30 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.15 7.93 -2.39 -0.02 1.13 16 34 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -68.06 282.99 1.84 -66.23 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: -0.17 Total: 33.16 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 2.70 Total: -33.72 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -1.04 Total: -94.71 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -1.71 Total: -23.10 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 2.05 Total: 52.15 kcal Total: -68.06 1.84 -66.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084485546.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.153 kcal (2) G-P(sol) polarization free energy of solvation -68.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds