Wall clock time and date at job start Mon Mar 30 2020 04:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86800 * 119.99692 * 2 1 4 4 H 1.48505 * 109.47224 * 239.99940 * 3 2 1 5 5 H 1.48504 * 109.47265 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47036 * 119.99505 * 3 2 1 7 7 C 1.38648 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00094 * 180.02562 * 7 2 1 9 9 O 1.34826 * 120.00070 * 359.97438 * 7 2 1 10 10 C 1.35745 * 117.00199 * 185.06264 * 9 7 2 11 11 C 1.38906 * 120.07117 * 354.40808 * 10 9 7 12 12 C 1.38074 * 119.93214 * 180.31604 * 11 10 9 13 13 C 1.38328 * 120.06793 * 359.68114 * 12 11 10 14 14 C 1.38278 * 120.14035 * 0.02562 * 13 12 11 15 15 C 1.38123 * 120.07023 * 0.04025 * 14 13 12 16 16 C 1.50692 * 120.03793 * 179.97438 * 15 14 13 17 17 N 1.46902 * 109.47114 * 259.99922 * 16 15 14 18 18 C 1.46897 * 111.00233 * 179.97438 * 17 16 15 19 19 C 1.53366 * 114.56748 * 205.00334 * 18 17 16 20 20 O 1.43357 * 88.49449 * 220.44361 * 19 18 17 21 21 C 1.43343 * 88.32048 * 28.12893 * 20 19 18 22 22 H 0.97002 * 120.00261 * 0.02562 * 1 2 3 23 23 H 1.07994 * 120.03243 * 359.97438 * 11 10 9 24 24 H 1.07999 * 119.96804 * 179.70418 * 12 11 10 25 25 H 1.08001 * 119.93244 * 180.02562 * 13 12 11 26 26 H 1.07998 * 119.96862 * 180.02562 * 14 13 12 27 27 H 1.08999 * 109.47411 * 140.00232 * 16 15 14 28 28 H 1.08995 * 109.47210 * 19.99882 * 16 15 14 29 29 H 1.00899 * 111.00075 * 303.95806 * 17 16 15 30 30 H 1.09002 * 113.56391 * 339.27676 * 18 17 16 31 31 H 1.09002 * 113.39266 * 105.52382 * 19 18 17 32 32 H 1.08995 * 113.39187 * 335.36453 * 19 18 17 33 33 H 1.08994 * 113.39671 * 86.74830 * 21 20 19 34 34 H 1.09008 * 113.39069 * 216.90526 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1032 1.6965 1.2126 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0016 10 6 2.0701 -3.5044 0.1088 11 6 3.4576 -3.4394 0.0942 12 6 4.2027 -4.5973 0.1969 13 6 3.5688 -5.8206 0.3208 14 6 2.1879 -5.8881 0.3418 15 6 1.4369 -4.7335 0.2381 16 6 -0.0680 -4.8079 0.2604 17 7 -0.5829 -4.7238 -1.1128 18 6 -2.0501 -4.7939 -1.1302 19 6 -2.6482 -5.3106 -2.4445 20 8 -3.6746 -4.3170 -2.3241 21 6 -2.7455 -3.5065 -1.5929 22 1 -0.4850 0.8400 -0.0004 23 1 3.9530 -2.4847 -0.0029 24 1 5.2814 -4.5479 0.1808 25 1 4.1538 -6.7249 0.4014 26 1 1.6959 -6.8446 0.4391 27 1 -0.4641 -3.9799 0.8483 28 1 -0.3785 -5.7522 0.7076 29 1 -0.2551 -3.8869 -1.5713 30 1 -2.4757 -5.2411 -0.2319 31 1 -3.0242 -6.3315 -2.3770 32 1 -1.9974 -5.1584 -3.3055 33 1 -2.1195 -2.8828 -2.2310 34 1 -3.2067 -2.9460 -0.7797 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087194861.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:39 Heat of formation + Delta-G solvation = -10.428354 kcal Electronic energy + Delta-G solvation = -17993.299890 eV Core-core repulsion = 15086.304579 eV Total energy + Delta-G solvation = -2906.995311 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.40781 -39.17356 -36.47201 -34.84635 -32.33556 -30.86673 -28.99629 -27.58471 -25.90430 -25.43206 -23.99307 -21.64328 -20.63364 -20.20283 -17.99120 -16.88942 -16.17267 -16.07535 -15.45228 -15.01069 -14.73609 -14.42859 -14.11798 -13.68410 -13.47373 -12.98927 -12.67154 -12.48151 -12.20595 -11.74602 -11.61923 -11.44611 -11.17481 -10.91798 -10.87036 -10.69037 -10.45058 -10.42381 -9.52561 -9.36275 -8.89174 -8.20750 -7.92179 -7.25387 -6.51617 -4.10112 2.11430 2.35682 3.09659 3.10527 3.12987 3.91782 4.20959 4.36209 4.55038 4.88868 5.06651 5.15962 5.22120 5.53501 5.55134 5.60053 5.64433 5.80842 5.84319 5.92817 5.98569 6.07580 6.24276 6.25571 6.32104 6.40057 6.68264 6.87195 7.06472 7.21788 7.33967 7.36009 7.41928 7.75537 7.81857 7.94783 8.95377 9.62633 10.66003 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.008851 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.819171 B = 3162.576227 C = 4979.350683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.042 3.958 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.392 4.392 8 H 0.090 0.910 9 O -0.177 6.177 10 C 0.158 3.842 11 C -0.234 4.234 12 C -0.074 4.074 13 C -0.214 4.214 14 C -0.059 4.059 15 C -0.161 4.161 16 C 0.118 3.882 17 N -0.669 5.669 18 C 0.027 3.973 19 C 0.035 3.965 20 O -0.378 6.378 21 C 0.007 3.993 22 H 0.270 0.730 23 H 0.126 0.874 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.357 0.643 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 -7.371 -0.684 7.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.162 4.162 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.081 6.081 10 C 0.104 3.896 11 C -0.253 4.253 12 C -0.093 4.093 13 C -0.233 4.233 14 C -0.078 4.078 15 C -0.162 4.162 16 C -0.010 4.010 17 N -0.302 5.302 18 C -0.085 4.085 19 C -0.043 4.043 20 O -0.296 6.296 21 C -0.072 4.072 22 H 0.080 0.920 23 H 0.144 0.856 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.130 0.870 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.177 0.823 30 H 0.125 0.875 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.204 -7.775 -0.919 7.832 hybrid contribution 0.588 1.759 0.360 1.889 sum 0.384 -6.015 -0.560 6.054 Atomic orbital electron populations 1.69994 1.05827 1.27760 1.46232 1.25216 0.95831 0.98653 0.96508 0.85821 0.78760 0.79943 0.79179 1.19545 1.20312 1.19568 1.21248 0.91788 0.80796 1.53046 0.89238 1.83922 1.34191 1.11299 1.78659 1.19212 0.90226 0.87652 0.92528 1.21159 0.93772 0.98999 1.11380 1.20769 0.98451 0.92491 0.97552 1.20599 0.94358 0.96931 1.11416 1.20541 0.93444 0.96202 0.97589 1.18826 0.94492 0.90996 1.11925 1.20554 0.91132 1.00236 0.89077 1.60530 1.05877 1.45774 1.17975 1.24360 0.89412 0.96007 0.98724 1.23884 0.88551 0.93797 0.98093 1.89798 1.29881 1.32734 1.77204 1.24502 0.91216 0.95705 0.95752 0.92022 0.85613 0.87594 0.87673 0.87039 0.93677 0.91504 0.82265 0.87507 0.90009 0.90115 0.89698 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.85 13.67 55.48 0.76 -23.09 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 19.95 29.55 -169.99 -5.02 14.93 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.39 -10.42 9.49 30.88 0.29 -10.13 16 8 H 0.09 2.23 5.20 -52.49 -0.27 1.96 16 9 O -0.18 -4.64 8.93 0.07 0.00 -4.64 16 10 C 0.16 3.60 6.61 -39.10 -0.26 3.35 16 11 C -0.23 -4.95 9.17 -39.39 -0.36 -5.31 16 12 C -0.07 -1.34 10.04 -39.61 -0.40 -1.74 16 13 C -0.21 -3.66 10.04 -39.53 -0.40 -4.06 16 14 C -0.06 -1.04 9.66 -39.61 -0.38 -1.42 16 15 C -0.16 -3.21 5.41 -104.43 -0.56 -3.77 16 16 C 0.12 2.15 5.32 -4.98 -0.03 2.13 16 17 N -0.67 -11.65 6.66 -108.93 -0.73 -12.37 16 18 C 0.03 0.41 4.71 -67.29 -0.32 0.10 16 19 C 0.03 0.49 8.56 24.59 0.21 0.70 16 20 O -0.38 -6.33 12.74 -35.23 -0.45 -6.78 16 21 C 0.01 0.11 8.37 24.64 0.21 0.32 16 22 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 23 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 24 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 25 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 26 H 0.11 1.67 8.04 -52.49 -0.42 1.25 16 27 H 0.04 0.92 7.86 -51.93 -0.41 0.51 16 28 H 0.07 1.05 8.00 -51.93 -0.42 0.64 16 29 H 0.36 7.01 8.14 -39.29 -0.32 6.69 16 30 H 0.11 1.52 7.88 -51.93 -0.41 1.11 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.48 7.86 -51.93 -0.41 1.07 16 34 H 0.09 1.41 8.14 -51.92 -0.42 0.99 16 LS Contribution 293.24 15.07 4.42 4.42 Total: -1.00 -28.13 293.24 -7.31 -35.44 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -4.20 Total: 10.93 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -2.09 Total: -18.84 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.03 Total: -35.47 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.45 Total: -11.42 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.13 -7.31 -35.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087194861.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.017 kcal (2) G-P(sol) polarization free energy of solvation -28.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds