Wall clock time and date at job start Mon Mar 30 2020 04:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00224 * 2 1 4 4 C 1.50699 * 109.46673 * 269.99840 * 3 2 1 5 5 H 1.07991 * 120.00645 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99442 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00193 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99596 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47197 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46653 * 120.00590 * 8 6 4 11 11 H 1.48503 * 109.46879 * 239.99905 * 8 6 4 12 12 C 1.38805 * 119.99870 * 179.97438 * 2 1 3 13 13 C 1.36469 * 119.78213 * 184.72334 * 12 2 1 14 14 C 1.41623 * 118.40800 * 179.78833 * 13 12 2 15 15 N 1.31005 * 133.07646 * 180.16707 * 14 13 12 16 16 N 1.40231 * 107.85105 * 180.29628 * 15 14 13 17 17 H 0.96995 * 126.18008 * 180.02562 * 16 15 14 18 18 C 1.34868 * 107.64382 * 359.97438 * 16 15 14 19 19 O 1.21868 * 126.03555 * 179.97438 * 18 16 15 20 20 N 1.34646 * 107.92392 * 0.02562 * 18 16 15 21 21 C 1.36705 * 132.62604 * 179.97438 * 20 18 16 22 22 N 1.30025 * 121.24135 * 180.02562 * 21 20 18 23 23 H 1.09001 * 109.47306 * 269.99883 * 1 2 3 24 24 H 1.08998 * 109.47019 * 30.00729 * 1 2 3 25 25 H 1.09000 * 109.47194 * 150.00102 * 1 2 3 26 26 H 1.09005 * 109.46767 * 29.99736 * 3 2 1 27 27 H 1.08996 * 109.47165 * 149.99564 * 3 2 1 28 28 H 0.96997 * 120.00024 * 179.97438 * 7 6 4 29 29 H 1.07996 * 120.79748 * 0.03228 * 13 12 2 30 30 H 1.08000 * 119.37547 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5534 3.6180 -0.6732 8 14 3.4381 3.4167 -3.4340 9 1 2.8610 2.4161 -4.3673 10 1 2.8001 4.7371 -3.6680 11 1 4.9008 3.5255 -3.6666 12 6 2.1590 -1.2021 0.0005 13 6 3.5202 -1.1989 0.0981 14 6 4.1984 -2.4422 0.1004 15 7 5.4640 -2.7708 0.1816 16 7 5.5492 -4.1695 0.1270 17 1 6.3633 -4.6954 0.1659 18 6 4.2948 -4.6513 0.0120 19 8 3.9825 -5.8269 -0.0631 20 7 3.4487 -3.6041 -0.0064 21 6 2.0882 -3.5147 -0.1053 22 7 1.4860 -2.3624 -0.1012 23 1 -0.3634 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5139 28 1 4.0303 4.4439 -0.8504 29 1 4.0668 -0.2707 0.1756 30 1 1.5027 -4.4183 -0.1892 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090642352.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:37 Heat of formation + Delta-G solvation = 98.406102 kcal Electronic energy + Delta-G solvation = -17738.421815 eV Core-core repulsion = 14764.898328 eV Total energy + Delta-G solvation = -2973.523487 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.097 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.86994 -39.23091 -37.18847 -36.28431 -33.33382 -32.49458 -31.87178 -28.97104 -28.12221 -25.71897 -25.02996 -23.17414 -22.10142 -21.18317 -18.68117 -17.86704 -16.94158 -16.87272 -16.57378 -16.04108 -15.16141 -15.06845 -14.51607 -14.35616 -13.39493 -13.21868 -12.92688 -12.36659 -12.24626 -12.04392 -11.71860 -11.36838 -11.20381 -10.95183 -10.80632 -10.31219 -10.24929 -10.03561 -9.89865 -9.66380 -8.62125 -8.31153 -6.79789 -6.20739 -4.31126 0.80554 1.88099 1.89505 2.66924 3.20298 3.21082 3.29248 3.33414 3.53152 3.84612 4.19486 4.29846 4.53479 5.00529 5.09657 5.15776 5.74894 5.93575 5.94359 6.02534 6.23414 6.34439 6.58813 6.76814 6.80856 7.10227 7.33893 7.64212 7.72161 7.95730 7.97322 8.06339 8.14656 8.75771 9.36430 10.83332 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.026775 B = 0.006377 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.505124 B = 4389.455987 C = 4970.360374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.568 5.568 3 C 0.245 3.755 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.426 3.574 13 C -0.293 4.293 14 C 0.352 3.648 15 N -0.324 5.324 16 N -0.536 5.536 17 H 0.455 0.545 18 C 0.654 3.346 19 O -0.556 6.556 20 N -0.527 5.527 21 C 0.418 3.582 22 N -0.526 5.526 23 H 0.044 0.956 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.266 0.734 29 H 0.169 0.831 30 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.760 -10.198 2.208 10.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.270 5.270 3 C 0.126 3.874 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.201 3.799 13 C -0.330 4.330 14 C 0.091 3.909 15 N -0.154 5.154 16 N -0.284 5.284 17 H 0.304 0.696 18 C 0.351 3.649 19 O -0.429 6.429 20 N -0.252 5.252 21 C 0.129 3.871 22 N -0.245 5.245 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.186 0.814 30 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -2.858 -10.034 2.240 10.671 hybrid contribution 0.785 -0.090 -0.994 1.270 sum -2.073 -10.124 1.246 10.409 Atomic orbital electron populations 1.21599 0.79738 1.02970 1.00618 1.47168 1.05841 1.03420 1.70604 1.19609 0.92529 0.77300 0.97952 1.21472 1.37331 1.06836 0.91997 0.91989 1.24931 0.95041 0.96116 0.97659 1.69918 1.37764 1.14332 1.30839 0.86419 0.78217 0.78489 0.84234 1.19719 1.20828 1.20675 1.17531 0.88293 0.84975 0.89052 1.19810 0.92297 0.94870 1.25973 1.21351 0.87177 0.87085 0.95317 1.77872 1.12717 0.89392 1.35427 1.46499 1.07240 1.05231 1.69440 0.69602 1.16520 0.82483 0.84144 0.81726 1.91120 1.80205 1.12939 1.58644 1.44998 1.09135 1.10181 1.60843 1.24712 0.78048 0.97240 0.87064 1.67582 1.37652 0.97137 1.22132 0.93768 0.90908 0.91169 0.93944 0.93614 0.92416 0.81392 0.76977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.48 10.50 59.85 0.63 2.11 16 2 N -0.57 -10.93 2.97 -183.40 -0.54 -11.48 16 3 C 0.25 5.58 4.99 -5.19 -0.03 5.55 16 4 C -0.54 -13.67 9.39 -34.44 -0.32 -14.00 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -24.22 13.29 55.43 0.74 -23.48 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.43 7.82 7.34 -154.34 -1.13 6.69 16 13 C -0.29 -5.59 9.34 -38.93 -0.36 -5.95 16 14 C 0.35 6.24 7.92 -155.54 -1.23 5.01 16 15 N -0.32 -5.65 12.73 31.36 0.40 -5.25 16 16 N -0.54 -7.82 7.38 27.67 0.20 -7.62 16 17 H 0.46 5.03 8.96 -182.50 -1.64 3.39 16 18 C 0.65 10.32 9.10 -86.95 -0.79 9.53 16 19 O -0.56 -9.55 18.05 5.04 0.09 -9.46 16 20 N -0.53 -8.22 2.92 -67.83 -0.20 -8.42 16 21 C 0.42 5.56 12.16 -89.23 -1.08 4.48 16 22 N -0.53 -8.14 9.06 -13.41 -0.12 -8.26 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 25 H 0.07 1.02 7.29 -51.93 -0.38 0.64 16 26 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 27 H 0.05 1.10 5.99 -51.93 -0.31 0.79 16 28 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.17 3.52 6.00 -52.49 -0.31 3.21 16 30 H 0.21 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 270.16 15.07 4.07 4.07 Total: -1.00 -29.74 270.16 -8.67 -38.42 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -3.87 Total: 0.99 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: -4.42 Total: 15.04 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: 0.48 Total: -64.50 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.74 -8.67 -38.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090642352.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.826 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds