Wall clock time and date at job start Mon Mar 30 2020 03:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38287 * 119.53776 * 2 1 4 4 C 1.38477 * 119.24234 * 179.97438 * 3 2 1 5 5 C 1.39343 * 118.36018 * 0.02562 * 4 3 2 6 6 N 1.39745 * 120.49765 * 179.97438 * 5 4 3 7 7 C 1.34784 * 119.99712 * 34.96628 * 6 5 4 8 8 O 1.21465 * 120.00202 * 355.32795 * 7 6 5 9 9 C 1.48729 * 119.99648 * 175.32083 * 7 6 5 10 10 O 1.21509 * 120.00372 * 359.73480 * 9 7 6 11 11 N 1.34784 * 120.00073 * 180.02562 * 9 7 6 12 12 C 1.36106 * 120.00323 * 179.72555 * 11 9 7 13 13 H 1.08007 * 120.00278 * 0.02562 * 12 11 9 14 14 C 1.39595 * 120.00106 * 180.02562 * 12 11 9 15 15 N 1.31016 * 119.99873 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99942 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47461 * 89.99615 * 16 14 12 18 18 H 1.48502 * 109.47128 * 210.00000 * 16 14 12 19 19 H 1.48504 * 109.47054 * 329.99903 * 16 14 12 20 20 C 1.38907 * 119.00768 * 0.25601 * 5 4 3 21 21 N 1.31808 * 120.65720 * 359.47062 * 20 5 4 22 22 H 1.08994 * 109.46958 * 89.99322 * 1 2 3 23 23 H 1.08994 * 109.47230 * 209.99511 * 1 2 3 24 24 H 1.08999 * 109.46474 * 329.99497 * 1 2 3 25 25 H 1.08005 * 120.37323 * 0.02562 * 3 2 1 26 26 H 1.08008 * 120.82006 * 179.97438 * 4 3 2 27 27 H 0.96993 * 120.00132 * 214.97659 * 6 5 4 28 28 H 0.96998 * 119.99560 * 359.73195 * 11 9 7 29 29 H 0.97000 * 119.99679 * 180.02562 * 15 14 12 30 30 H 1.07998 * 119.67116 * 179.72776 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2031 0.0000 4 6 3.5735 1.1960 0.0005 5 6 4.2291 -0.0336 0.0005 6 7 5.6253 -0.0929 0.0005 7 6 6.3392 0.8342 0.6695 8 8 5.7740 1.7687 1.2011 9 6 7.8189 0.7128 0.7568 10 8 8.3839 -0.2247 0.2292 11 7 8.5328 1.6396 1.4262 12 6 9.8865 1.5255 1.5109 13 1 10.3887 0.6926 1.0414 14 6 10.6257 2.4851 2.2047 15 7 11.9287 2.3750 2.2866 16 14 9.7571 3.9254 3.0174 17 1 9.3909 3.5610 4.4096 18 1 10.6619 5.1028 3.0356 19 1 8.5280 4.2574 2.2531 20 6 3.4741 -1.1995 -0.0055 21 7 2.1570 -1.1473 -0.0006 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3632 0.8900 0.5139 25 1 1.6473 2.1377 0.0004 26 1 4.1317 2.1207 0.0001 27 1 6.0806 -0.8011 -0.4810 28 1 8.0818 2.3878 1.8477 29 1 12.4423 3.0416 2.7690 30 1 3.9711 -2.1583 -0.0100 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164862019.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:59 Heat of formation + Delta-G solvation = -30.676348 kcal Electronic energy + Delta-G solvation = -17107.311520 eV Core-core repulsion = 14095.897846 eV Total energy + Delta-G solvation = -3011.413673 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.82256 -39.46391 -37.59939 -35.35594 -34.25065 -32.34533 -32.06533 -31.59081 -27.53901 -25.98847 -23.72444 -23.37437 -21.60547 -19.68960 -19.19931 -17.88089 -16.80263 -16.29002 -16.05051 -15.65826 -15.12024 -14.77658 -14.45239 -13.96856 -13.66612 -13.21428 -13.09854 -12.98844 -12.57598 -12.53082 -12.33496 -12.07933 -11.39011 -10.90420 -10.72965 -10.67425 -10.24170 -9.90117 -9.73428 -9.50086 -8.57459 -8.55869 -8.19363 -6.72504 -4.12873 0.95178 1.27087 2.09527 2.94032 2.95747 2.99777 3.03518 3.70690 3.84114 3.99140 4.27247 4.50198 4.72648 4.89384 4.95756 5.00019 5.22893 5.44443 5.47712 5.52452 5.57776 5.78027 6.05274 6.16999 6.30469 6.78165 7.10396 7.33717 7.75680 7.91830 8.02514 8.29742 8.58000 9.03755 9.45713 10.36733 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.045518 B = 0.004740 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.994690 B = 5905.297209 C = 6428.970775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.097 3.903 3 C -0.152 4.152 4 C -0.079 4.079 5 C 0.100 3.900 6 N -0.650 5.650 7 C 0.515 3.485 8 O -0.532 6.532 9 C 0.399 3.601 10 O -0.577 6.577 11 N -0.518 5.518 12 C -0.307 4.307 13 H 0.130 0.870 14 C 0.054 3.946 15 N -0.841 5.841 16 Si 0.877 3.123 17 H -0.263 1.263 18 H -0.269 1.269 19 H -0.259 1.259 20 C 0.080 3.920 21 N -0.467 5.467 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.136 0.864 26 H 0.151 0.849 27 H 0.425 0.575 28 H 0.384 0.616 29 H 0.284 0.716 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.279 -0.611 -3.222 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.041 4.041 3 C -0.172 4.172 4 C -0.107 4.107 5 C 0.003 3.997 6 N -0.297 5.297 7 C 0.301 3.699 8 O -0.408 6.408 9 C 0.184 3.816 10 O -0.464 6.464 11 N -0.155 5.155 12 C -0.436 4.436 13 H 0.147 0.853 14 C -0.156 4.156 15 N -0.477 5.477 16 Si 0.701 3.299 17 H -0.187 1.187 18 H -0.193 1.193 19 H -0.184 1.184 20 C -0.081 4.081 21 N -0.176 5.176 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.154 0.846 26 H 0.169 0.831 27 H 0.263 0.737 28 H 0.219 0.781 29 H 0.095 0.905 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.492 -1.240 -3.080 17.804 hybrid contribution 0.365 1.613 0.474 1.720 sum -17.127 0.372 -2.605 17.328 Atomic orbital electron populations 1.20638 0.88912 1.03235 1.02783 1.21226 0.96988 0.88398 0.97478 1.21875 0.94146 0.99242 1.01948 1.21820 0.94321 0.98351 0.96195 1.18890 0.84029 0.95261 1.01529 1.43102 1.03410 1.31763 1.51391 1.20917 0.89966 0.81506 0.77504 1.90674 1.72647 1.31610 1.45905 1.18488 0.85574 0.87702 0.89873 1.90648 1.70478 1.33660 1.51613 1.41829 1.07996 1.21978 1.43661 1.19616 0.79433 1.11920 1.32655 0.85254 1.25275 0.95455 0.98209 0.96633 1.69438 1.05365 1.35172 1.37722 0.86654 0.80247 0.82052 0.80901 1.18731 1.19320 1.18415 1.22606 0.89285 0.97076 0.99101 1.67461 1.08716 1.29216 1.12253 0.90703 0.90688 0.90918 0.84639 0.83120 0.73692 0.78079 0.90514 0.82310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 10.17 36.01 0.37 -0.46 16 2 C 0.10 1.18 6.78 -82.56 -0.56 0.62 16 3 C -0.15 -1.83 9.73 -39.48 -0.38 -2.22 16 4 C -0.08 -1.15 8.81 -39.08 -0.34 -1.49 16 5 C 0.10 1.50 6.32 -83.59 -0.53 0.97 16 6 N -0.65 -10.49 5.33 -10.37 -0.06 -10.54 16 7 C 0.51 10.14 7.72 -11.92 -0.09 10.05 16 8 O -0.53 -10.94 13.94 5.40 0.08 -10.87 16 9 C 0.40 9.25 7.81 -11.92 -0.09 9.16 16 10 O -0.58 -14.65 16.04 5.36 0.09 -14.57 16 11 N -0.52 -12.55 5.06 -11.62 -0.06 -12.61 16 12 C -0.31 -8.26 10.16 -15.15 -0.15 -8.41 16 13 H 0.13 3.89 7.37 -52.48 -0.39 3.50 16 14 C 0.05 1.39 5.51 -17.39 -0.10 1.29 16 15 N -0.84 -22.61 13.94 55.53 0.77 -21.84 16 16 Si 0.88 18.59 27.74 -169.99 -4.72 13.88 16 17 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 19 H -0.26 -5.30 6.53 56.52 0.37 -4.93 16 20 C 0.08 1.07 11.13 -17.31 -0.19 0.87 16 21 N -0.47 -6.37 10.26 -9.29 -0.10 -6.46 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 25 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 26 H 0.15 2.34 6.32 -52.48 -0.33 2.01 16 27 H 0.42 6.18 8.29 -40.82 -0.34 5.84 16 28 H 0.38 8.69 5.22 -40.82 -0.21 8.47 16 29 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 30 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 273.14 15.07 4.12 4.12 Total: -1.00 -30.20 273.14 -4.50 -34.70 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -2.55 Total: 13.82 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: -2.08 Total: 10.37 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.56 Total: -51.45 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: 0.16 Total: -25.43 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -4.72 Total: 13.88 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.20 -4.50 -34.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164862019.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.023 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds