Wall clock time and date at job start Mon Mar 30 2020 03:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38287 * 119.53776 * 2 1 4 4 C 1.38477 * 119.24234 * 179.97438 * 3 2 1 5 5 C 1.39343 * 118.36018 * 0.02562 * 4 3 2 6 6 N 1.39745 * 120.49765 * 179.97438 * 5 4 3 7 7 C 1.34784 * 119.99712 * 34.96628 * 6 5 4 8 8 O 1.21465 * 120.00202 * 355.32795 * 7 6 5 9 9 C 1.48729 * 119.99648 * 175.32083 * 7 6 5 10 10 O 1.21509 * 120.00372 * 359.73480 * 9 7 6 11 11 N 1.34784 * 120.00073 * 180.02562 * 9 7 6 12 12 C 1.36106 * 120.00323 * 179.72555 * 11 9 7 13 13 H 1.08007 * 120.00278 * 0.02562 * 12 11 9 14 14 C 1.39595 * 120.00106 * 180.02562 * 12 11 9 15 15 N 1.31016 * 119.99873 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99942 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47461 * 89.99615 * 16 14 12 18 18 H 1.48502 * 109.47128 * 210.00000 * 16 14 12 19 19 H 1.48504 * 109.47054 * 329.99903 * 16 14 12 20 20 C 1.38907 * 119.00768 * 0.25601 * 5 4 3 21 21 N 1.31808 * 120.65720 * 359.47062 * 20 5 4 22 22 H 1.08994 * 109.46958 * 89.99322 * 1 2 3 23 23 H 1.08994 * 109.47230 * 209.99511 * 1 2 3 24 24 H 1.08999 * 109.46474 * 329.99497 * 1 2 3 25 25 H 1.08005 * 120.37323 * 0.02562 * 3 2 1 26 26 H 1.08008 * 120.82006 * 179.97438 * 4 3 2 27 27 H 0.96993 * 120.00132 * 214.97659 * 6 5 4 28 28 H 0.96998 * 119.99560 * 359.73195 * 11 9 7 29 29 H 0.97000 * 119.99679 * 180.02562 * 15 14 12 30 30 H 1.07998 * 119.67116 * 179.72776 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2031 0.0000 4 6 3.5735 1.1960 0.0005 5 6 4.2291 -0.0336 0.0005 6 7 5.6253 -0.0929 0.0005 7 6 6.3392 0.8342 0.6695 8 8 5.7740 1.7687 1.2011 9 6 7.8189 0.7128 0.7568 10 8 8.3839 -0.2247 0.2292 11 7 8.5328 1.6396 1.4262 12 6 9.8865 1.5255 1.5109 13 1 10.3887 0.6926 1.0414 14 6 10.6257 2.4851 2.2047 15 7 11.9287 2.3750 2.2866 16 14 9.7571 3.9254 3.0174 17 1 9.3909 3.5610 4.4096 18 1 10.6619 5.1028 3.0356 19 1 8.5280 4.2574 2.2531 20 6 3.4741 -1.1995 -0.0055 21 7 2.1570 -1.1473 -0.0006 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3632 0.8900 0.5139 25 1 1.6473 2.1377 0.0004 26 1 4.1317 2.1207 0.0001 27 1 6.0806 -0.8011 -0.4810 28 1 8.0818 2.3878 1.8477 29 1 12.4423 3.0416 2.7690 30 1 3.9711 -2.1583 -0.0100 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164862019.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:58 Heat of formation + Delta-G solvation = -53.628005 kcal Electronic energy + Delta-G solvation = -17108.306778 eV Core-core repulsion = 14095.897846 eV Total energy + Delta-G solvation = -3012.408932 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.14801 -40.87702 -39.34448 -36.88296 -36.02600 -34.02532 -33.31722 -32.67892 -28.76945 -27.64468 -25.00514 -24.65939 -22.85243 -21.41860 -20.96621 -19.40296 -18.23639 -17.59141 -17.41942 -17.09763 -16.84250 -16.25710 -15.57273 -15.36478 -15.01142 -14.84427 -14.68896 -14.48571 -14.17815 -13.42626 -13.12284 -13.08546 -12.99155 -12.59614 -12.53017 -12.02930 -11.90041 -11.75567 -10.80850 -10.69034 -10.52850 -10.24665 -9.33377 -8.67095 -6.20911 -0.18702 0.21667 0.52875 1.27427 1.31772 1.36617 1.49104 2.07203 2.15890 2.73563 2.87231 3.01608 3.41787 3.64595 3.81177 3.86346 4.00647 4.24603 4.62703 4.76040 4.85881 4.91360 5.09704 5.15895 5.21327 5.26839 5.66608 5.71711 5.92119 6.25722 6.50531 6.72247 6.92985 7.06234 7.53993 8.46864 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.045518 B = 0.004740 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.994690 B = 5905.297209 C = 6428.970775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.100 3.900 3 C -0.148 4.148 4 C -0.091 4.091 5 C 0.072 3.928 6 N -0.632 5.632 7 C 0.527 3.473 8 O -0.538 6.538 9 C 0.405 3.595 10 O -0.601 6.601 11 N -0.523 5.523 12 C -0.339 4.339 13 H 0.081 0.919 14 C 0.013 3.987 15 N -0.886 5.886 16 Si 0.948 3.052 17 H -0.252 1.252 18 H -0.256 1.256 19 H -0.246 1.246 20 C 0.086 3.914 21 N -0.484 5.484 22 H 0.091 0.909 23 H 0.075 0.925 24 H 0.095 0.905 25 H 0.167 0.833 26 H 0.139 0.861 27 H 0.431 0.569 28 H 0.394 0.606 29 H 0.292 0.708 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.622 0.409 -2.928 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.038 4.038 3 C -0.168 4.168 4 C -0.119 4.119 5 C -0.024 4.024 6 N -0.279 5.279 7 C 0.311 3.689 8 O -0.414 6.414 9 C 0.190 3.810 10 O -0.488 6.488 11 N -0.161 5.161 12 C -0.468 4.468 13 H 0.099 0.901 14 C -0.193 4.193 15 N -0.523 5.523 16 Si 0.767 3.233 17 H -0.176 1.176 18 H -0.180 1.180 19 H -0.170 1.170 20 C -0.074 4.074 21 N -0.194 5.194 22 H 0.109 0.891 23 H 0.094 0.906 24 H 0.114 0.886 25 H 0.185 0.815 26 H 0.157 0.843 27 H 0.271 0.729 28 H 0.230 0.770 29 H 0.103 0.897 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -20.853 -0.246 -2.803 21.042 hybrid contribution 1.199 1.136 0.258 1.672 sum -19.654 0.890 -2.545 19.838 Atomic orbital electron populations 1.20773 0.86097 1.04437 1.04153 1.21919 0.98873 0.87923 0.95116 1.22192 0.93131 1.00738 1.00771 1.21893 0.95600 0.97716 0.96643 1.19027 0.82871 0.96284 1.04223 1.42869 1.04230 1.30678 1.50125 1.20075 0.88165 0.82373 0.78287 1.90677 1.72194 1.32033 1.46540 1.19238 0.87354 0.86515 0.87910 1.90629 1.71840 1.34449 1.51899 1.41670 1.07055 1.22779 1.44637 1.19209 0.80819 1.11949 1.34827 0.90148 1.26107 0.95994 1.00745 0.96442 1.69541 1.07056 1.36778 1.38913 0.85591 0.79562 0.78089 0.80023 1.17621 1.17995 1.16970 1.22884 0.89383 0.97354 0.97783 1.67591 1.08594 1.30122 1.13061 0.89081 0.90633 0.88630 0.81529 0.84314 0.72931 0.76952 0.89727 0.80447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.17 71.24 0.72 -0.53 16 2 C 0.10 2.09 6.78 42.57 0.29 2.38 16 3 C -0.15 -3.11 9.73 22.34 0.22 -2.89 16 4 C -0.09 -2.47 8.81 22.59 0.20 -2.27 16 5 C 0.07 2.03 6.32 38.31 0.24 2.28 16 6 N -0.63 -19.80 5.33 -305.04 -1.63 -21.42 16 7 C 0.53 20.39 7.72 87.05 0.67 21.06 16 8 O -0.54 -21.39 13.94 -3.61 -0.05 -21.44 16 9 C 0.40 19.03 7.81 87.05 0.68 19.71 16 10 O -0.60 -31.34 16.04 -3.74 -0.06 -31.40 16 11 N -0.52 -25.72 5.06 -308.95 -1.56 -27.28 16 12 C -0.34 -19.03 10.16 84.36 0.86 -18.17 16 13 H 0.08 5.20 7.37 -2.91 -0.02 5.17 16 14 C 0.01 0.69 5.51 85.14 0.47 1.16 16 15 N -0.89 -49.16 13.94 21.77 0.30 -48.86 16 16 Si 0.95 37.90 27.74 68.60 1.90 39.80 16 17 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 18 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 19 H -0.25 -9.19 6.53 99.48 0.65 -8.55 16 20 C 0.09 2.12 11.13 84.86 0.94 3.06 16 21 N -0.48 -11.96 10.26 -183.31 -1.88 -13.84 16 22 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.09 0.82 8.08 -2.39 -0.02 0.80 16 25 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 26 H 0.14 4.10 6.32 -2.91 -0.02 4.09 16 27 H 0.43 12.24 8.29 -92.71 -0.77 11.47 16 28 H 0.39 17.56 5.22 -92.71 -0.48 17.08 16 29 H 0.29 14.57 8.30 -92.71 -0.77 13.80 16 30 H 0.18 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -67.13 273.14 2.22 -64.92 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.10 Total: 33.73 kcal Atomic # 6 Polarization: 20.49 SS G_CDS: 5.29 Total: 25.79 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -4.77 Total: -111.40 kcal Atomic # 8 Polarization: -52.72 SS G_CDS: -0.11 Total: -52.83 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 1.90 Total: 39.80 kcal Total: -67.13 2.22 -64.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164862019.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.288 kcal (2) G-P(sol) polarization free energy of solvation -67.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds