Wall clock time and date at job start Mon Mar 30 2020 03:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36437 * 119.99895 * 2 1 4 4 H 1.07993 * 119.99932 * 354.90178 * 3 2 1 5 5 C 1.46706 * 119.99604 * 174.90172 * 3 2 1 6 6 N 1.29501 * 119.99970 * 5.09092 * 5 3 2 7 7 Si 1.86798 * 119.99816 * 185.09418 * 5 3 2 8 8 H 1.48500 * 109.47089 * 89.99792 * 7 5 3 9 9 H 1.48500 * 109.47044 * 209.99929 * 7 5 3 10 10 H 1.48506 * 109.46989 * 330.00136 * 7 5 3 11 11 N 1.33034 * 119.99874 * 180.02562 * 2 1 3 12 12 N 1.28991 * 120.00169 * 359.97438 * 11 2 1 13 13 C 1.38922 * 120.00333 * 180.02562 * 12 11 2 14 14 C 1.39243 * 120.10099 * 5.72686 * 13 12 11 15 15 C 1.37977 * 119.89945 * 179.69854 * 14 13 12 16 16 C 1.38391 * 120.10004 * 0.28219 * 15 14 13 17 17 C 1.38336 * 120.20757 * 359.97438 * 16 15 14 18 18 C 1.38030 * 120.10414 * 359.97438 * 17 16 15 19 19 N 1.48012 * 120.05387 * 179.97438 * 18 17 16 20 20 O 1.31692 * 120.00506 * 354.00904 * 19 18 17 21 21 O 1.31701 * 119.99842 * 173.99971 * 19 18 17 22 22 H 1.09006 * 109.46930 * 274.22622 * 1 2 3 23 23 H 1.09000 * 109.47068 * 34.22286 * 1 2 3 24 24 H 1.08998 * 109.47407 * 154.22818 * 1 2 3 25 25 H 0.97001 * 119.99444 * 179.97438 * 6 5 3 26 26 H 0.97008 * 120.00069 * 359.97438 * 12 11 2 27 27 H 1.08003 * 120.04879 * 359.97438 * 14 13 12 28 28 H 1.08004 * 119.95245 * 180.25613 * 15 14 13 29 29 H 1.08000 * 119.89344 * 179.97438 * 16 15 14 30 30 H 1.08005 * 119.95314 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1892 1.1816 0.0000 4 1 1.6524 2.1150 -0.0831 5 6 3.6519 1.1840 0.1129 6 7 4.3031 0.0647 0.1132 7 14 4.5748 2.8017 0.2563 8 1 4.7118 3.1682 1.6888 9 1 5.9232 2.6576 -0.3490 10 1 3.8231 3.8654 -0.4570 11 7 2.1721 -1.1521 -0.0005 12 7 1.5272 -2.2692 -0.0005 13 6 2.2217 -3.4724 -0.0005 14 6 3.6090 -3.4779 0.1197 15 6 4.2941 -4.6755 0.1255 16 6 3.6051 -5.8698 0.0062 17 6 2.2274 -5.8691 -0.1188 18 6 1.5334 -4.6759 -0.1246 19 7 0.0594 -4.6764 -0.2590 20 8 -0.5804 -5.8038 -0.4913 21 8 -0.6125 -3.5493 -0.1460 22 1 -0.3633 0.0757 1.0249 23 1 -0.3633 0.8497 -0.5780 24 1 -0.3634 -0.9254 -0.4468 25 1 5.2703 0.0664 0.1875 26 1 0.5571 -2.2692 0.0002 27 1 4.1475 -2.5463 0.2128 28 1 5.3697 -4.6810 0.2228 29 1 4.1447 -6.8053 0.0107 30 1 1.6938 -6.8035 -0.2113 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000205315621.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:36 Heat of formation + Delta-G solvation = 91.008592 kcal Electronic energy + Delta-G solvation = -17785.561812 eV Core-core repulsion = 14779.424793 eV Total energy + Delta-G solvation = -3006.137018 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.59439 -37.49185 -36.90055 -34.55421 -33.20507 -32.26076 -30.76142 -29.43274 -26.88795 -26.14252 -24.99669 -21.88123 -21.45310 -19.93670 -18.16492 -17.49140 -16.93209 -16.60444 -15.39877 -14.98488 -14.88240 -14.17475 -13.79879 -13.61948 -13.45972 -13.09057 -12.56377 -12.09220 -11.65037 -11.62173 -11.38515 -11.28650 -11.26640 -10.77063 -10.54215 -10.22596 -9.94044 -9.91145 -9.77565 -8.75567 -8.66299 -8.30421 -7.12638 -7.08812 -4.62806 0.25911 1.93174 2.16596 2.42314 2.68810 2.77679 2.80902 3.50089 3.55919 4.02494 4.23895 4.74080 5.22991 5.43617 5.66599 5.79751 5.91788 5.93321 5.99035 6.24184 6.27687 6.41869 6.52093 6.71236 6.72259 6.90573 7.02147 7.18194 7.42110 7.68910 7.85151 7.93310 8.06575 8.39722 9.56658 10.18857 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.027394 B = 0.007045 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.874940 B = 3973.437559 C = 4975.569236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.161 3.839 3 C -0.357 4.357 4 H 0.099 0.901 5 C 0.054 3.946 6 N -0.662 5.662 7 Si 0.923 3.077 8 H -0.263 1.263 9 H -0.271 1.271 10 H -0.256 1.256 11 N -0.399 5.399 12 N -0.385 5.385 13 C 0.231 3.769 14 C -0.135 4.135 15 C -0.071 4.071 16 C -0.193 4.193 17 C -0.030 4.030 18 C -0.098 4.098 19 N 0.042 4.958 20 O -0.304 6.304 21 O -0.337 6.337 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.290 0.710 26 H 0.383 0.617 27 H 0.164 0.836 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.350 0.492 0.892 5.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 C -0.391 4.391 4 H 0.117 0.883 5 C -0.181 4.181 6 N -0.281 5.281 7 Si 0.746 3.254 8 H -0.188 1.188 9 H -0.195 1.195 10 H -0.179 1.179 11 N -0.243 5.243 12 N -0.107 5.107 13 C 0.096 3.904 14 C -0.156 4.156 15 C -0.093 4.093 16 C -0.216 4.216 17 C -0.049 4.049 18 C -0.206 4.206 19 N 0.452 4.548 20 O -0.456 6.456 21 O -0.473 6.473 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.102 0.898 26 H 0.240 0.760 27 H 0.182 0.818 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.220 0.332 0.906 6.294 hybrid contribution -1.252 0.766 0.028 1.468 sum 4.968 1.098 0.934 5.173 Atomic orbital electron populations 1.21280 0.96522 1.01931 1.01856 1.20793 0.89871 0.92877 0.94449 1.20156 0.90576 0.93304 1.35088 0.88300 1.27646 0.98171 0.98443 0.93875 1.69296 1.09835 1.28835 1.20127 0.86039 0.78802 0.80615 0.79970 1.18793 1.19516 1.17902 1.73863 1.21564 0.88752 1.40100 1.44773 1.10542 1.04264 1.51126 1.17211 0.92245 0.81858 0.99084 1.21122 0.90760 1.00180 1.03518 1.21072 0.99589 0.91917 0.96768 1.20623 0.92409 0.98263 1.10312 1.20406 0.94207 0.95405 0.94928 1.19514 0.76178 0.95302 1.29568 1.49760 1.03748 1.01451 0.99876 1.96112 1.71740 1.16391 1.61307 1.95736 1.68293 1.16657 1.66650 0.91778 0.91363 0.92722 0.89759 0.76029 0.81846 0.85806 0.85845 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 9.56 36.01 0.34 -2.76 16 2 C 0.16 3.68 6.78 -82.72 -0.56 3.12 16 3 C -0.36 -7.66 9.25 -36.81 -0.34 -8.00 16 4 H 0.10 1.90 7.95 -52.49 -0.42 1.48 16 5 C 0.05 1.09 5.66 -15.12 -0.09 1.01 16 6 N -0.66 -14.09 10.98 56.00 0.62 -13.47 16 7 Si 0.92 14.82 29.65 -169.99 -5.04 9.78 16 8 H -0.26 -4.25 7.11 56.52 0.40 -3.85 16 9 H -0.27 -4.30 7.11 56.52 0.40 -3.89 16 10 H -0.26 -4.06 7.11 56.52 0.40 -3.65 16 11 N -0.40 -9.63 7.54 33.36 0.25 -9.38 16 12 N -0.38 -9.16 5.86 32.39 0.19 -8.97 16 13 C 0.23 5.17 6.68 -83.92 -0.56 4.61 16 14 C -0.13 -2.67 9.48 -39.30 -0.37 -3.04 16 15 C -0.07 -1.13 10.04 -39.62 -0.40 -1.53 16 16 C -0.19 -3.01 10.05 -39.49 -0.40 -3.40 16 17 C -0.03 -0.54 9.57 -39.62 -0.38 -0.92 16 18 C -0.10 -2.15 6.90 -79.67 -0.55 -2.70 16 19 N 0.04 1.05 4.98 34.10 0.17 1.22 16 20 O -0.30 -7.60 19.17 -31.56 -0.61 -8.21 16 21 O -0.34 -8.68 16.25 -31.57 -0.51 -9.19 16 22 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 23 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 24 H 0.05 1.15 6.12 -51.93 -0.32 0.83 16 25 H 0.29 5.42 8.27 -40.82 -0.34 5.08 16 26 H 0.38 9.19 2.41 -191.12 -0.46 8.73 16 27 H 0.16 3.41 6.85 -52.48 -0.36 3.05 16 28 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 29 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.13 2.27 7.59 -52.48 -0.40 1.87 16 LS Contribution 271.27 15.07 4.09 4.09 Total: -1.00 -27.44 271.27 -6.92 -34.36 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -2.78 Total: 13.41 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -3.30 Total: -13.63 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 1.23 Total: -30.61 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -1.12 Total: -17.40 kcal Atomic # 14 Polarization: 14.82 SS G_CDS: -5.04 Total: 9.78 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.44 -6.92 -34.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205315621.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.368 kcal (2) G-P(sol) polarization free energy of solvation -27.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds