Wall clock time and date at job start Mon Mar 30 2020 03:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30174 * 126.80206 * 2 1 4 4 O 1.20918 * 111.60615 * 180.25162 * 3 2 1 5 5 C 1.34038 * 111.56333 * 359.74842 * 4 3 2 6 6 C 1.50704 * 126.77583 * 179.97438 * 5 4 3 7 7 C 1.35445 * 106.44927 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.00751 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.47292 * 275.45229 * 8 7 5 10 10 N 1.30732 * 126.40983 * 82.22341 * 9 8 7 11 11 N 1.28404 * 110.68203 * 180.02562 * 10 9 8 12 12 N 1.28938 * 110.31841 * 359.97438 * 11 10 9 13 13 N 1.35567 * 126.40680 * 262.23055 * 9 8 7 14 14 C 1.37610 * 127.43009 * 359.97438 * 13 9 8 15 15 H 1.08005 * 119.99812 * 3.62165 * 14 13 9 16 16 C 1.39017 * 120.00229 * 183.62266 * 14 13 9 17 17 N 1.31232 * 120.00331 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 120.00036 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47195 * 89.99684 * 18 16 14 20 20 H 1.48499 * 109.46955 * 209.99694 * 18 16 14 21 21 H 1.48499 * 109.46860 * 329.99789 * 18 16 14 22 22 H 1.09004 * 109.46892 * 264.54625 * 1 2 3 23 23 H 1.09003 * 109.47132 * 24.54488 * 1 2 3 24 24 H 1.09001 * 109.47070 * 144.54966 * 1 2 3 25 25 H 1.08997 * 109.47408 * 274.96074 * 6 5 4 26 26 H 1.08996 * 109.46937 * 34.96364 * 6 5 4 27 27 H 1.09000 * 109.47156 * 154.96212 * 6 5 4 28 28 H 1.08997 * 109.47213 * 155.45378 * 8 7 5 29 29 H 1.08997 * 109.47289 * 35.45182 * 8 7 5 30 30 H 0.97002 * 120.00832 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7254 -0.0049 5 6 3.6024 -0.6067 -0.0035 6 6 4.9022 -1.3695 -0.0089 7 6 2.3540 -1.1320 0.0038 8 6 1.9591 -2.5864 0.0077 9 6 1.9503 -3.1083 -1.4061 10 7 2.9870 -3.5206 -2.0875 11 7 2.6354 -3.9007 -3.2625 12 7 1.3628 -3.7613 -3.4160 13 7 0.8658 -3.2381 -2.2091 14 6 -0.4400 -2.9254 -1.9080 15 1 -0.6816 -2.4730 -0.9575 16 6 -1.4483 -3.1918 -2.8273 17 7 -1.1548 -3.7410 -3.9825 18 14 -3.2209 -2.7667 -2.4188 19 1 -3.5151 -1.3833 -2.8713 20 1 -4.1295 -3.7170 -3.1091 21 1 -3.4272 -2.8619 -0.9513 22 1 -0.3633 -0.0977 1.0231 23 1 -0.3633 0.9348 -0.4269 24 1 -0.3633 -0.8372 -0.5960 25 1 5.2553 -1.4785 -1.0343 26 1 5.6448 -0.8261 0.5753 27 1 4.7465 -2.3557 0.4285 28 1 0.9641 -2.6915 0.4400 29 1 2.6749 -3.1556 0.6006 30 1 -1.8582 -3.9266 -4.6241 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213280415.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:43 Heat of formation + Delta-G solvation = 155.370546 kcal Electronic energy + Delta-G solvation = -18251.582195 eV Core-core repulsion = 15280.528871 eV Total energy + Delta-G solvation = -2971.053324 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.097 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.54098 -41.05523 -35.49707 -34.55796 -33.40215 -31.99921 -30.87544 -28.56644 -28.17853 -26.62822 -25.98146 -22.13984 -21.73247 -20.10657 -19.62042 -18.15737 -17.30126 -16.55084 -15.86347 -14.87085 -14.60308 -14.16920 -13.73403 -13.55321 -13.14956 -12.86754 -12.74458 -12.30276 -12.29116 -12.21168 -11.95129 -11.61638 -11.46578 -11.12804 -10.69778 -10.53097 -10.45692 -10.21235 -9.48828 -9.11631 -8.98573 -8.76437 -8.36790 -7.04098 -4.90469 1.81650 2.49403 2.67979 2.82720 2.89737 3.08312 3.46879 3.50840 3.94785 4.24129 4.50907 4.61979 4.82722 5.12486 5.38836 5.50499 5.63809 5.69255 5.77529 5.79840 5.95220 5.98467 6.06431 6.14793 6.29180 6.47238 6.55076 6.73072 7.09759 7.44695 7.64978 8.26774 8.63332 8.77090 9.93361 10.42374 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.022659 B = 0.009133 C = 0.006968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.424654 B = 3064.925742 C = 4017.354906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.033 3.967 3 N -0.378 5.378 4 O 0.087 5.913 5 C -0.021 4.021 6 C -0.067 4.067 7 C -0.188 4.188 8 C 0.068 3.932 9 C 0.071 3.929 10 N -0.346 5.346 11 N -0.147 5.147 12 N -0.111 5.111 13 N -0.152 5.152 14 C -0.309 4.309 15 H 0.130 0.870 16 C 0.049 3.951 17 N -0.751 5.751 18 Si 0.937 3.063 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.256 1.256 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.401 4.292 9.632 10.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 N -0.086 5.086 4 O 0.024 5.976 5 C -0.084 4.084 6 C -0.124 4.124 7 C -0.193 4.193 8 C 0.027 3.973 9 C -0.196 4.196 10 N -0.209 5.209 11 N -0.137 5.137 12 N -0.097 5.097 13 N 0.067 4.933 14 C -0.448 4.448 15 H 0.147 0.853 16 C -0.173 4.173 17 N -0.377 5.377 18 Si 0.759 3.241 19 H -0.189 1.189 20 H -0.195 1.195 21 H -0.180 1.180 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.117 0.883 25 H 0.109 0.891 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.875 4.962 8.228 9.648 hybrid contribution -1.667 -0.215 0.601 1.785 sum -0.792 4.748 8.829 10.056 Atomic orbital electron populations 1.20444 0.86197 1.04853 1.03253 1.23421 0.98863 0.88468 1.01804 1.73767 0.89338 1.24047 1.21446 1.84731 1.21672 1.22720 1.68488 1.24244 0.98456 0.83421 1.02300 1.20295 0.89405 0.98280 1.04410 1.20825 0.91729 0.97065 1.09721 1.17789 1.02915 0.87616 0.89011 1.24160 0.84850 1.13103 0.97521 1.73673 1.26083 1.19958 1.01173 1.77598 1.07089 1.18483 1.10555 1.83029 1.02523 1.22786 1.01316 1.47530 1.07274 1.30577 1.07913 1.20261 0.78605 1.41292 1.04633 0.85289 1.25812 1.02002 0.94876 0.94594 1.70100 1.35529 1.27308 1.04760 0.85756 0.78846 0.79454 0.80048 1.18851 1.19457 1.17993 0.90416 0.90886 0.88297 0.89076 0.90682 0.88825 0.89227 0.88720 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 10.36 36.01 0.37 -0.99 16 2 C 0.03 0.59 7.33 -82.10 -0.60 -0.01 16 3 N -0.38 -6.98 12.07 33.42 0.40 -6.57 16 4 O 0.09 1.51 11.20 17.18 0.19 1.70 16 5 C -0.02 -0.34 7.49 -35.30 -0.26 -0.60 16 6 C -0.07 -0.84 10.33 36.01 0.37 -0.47 16 7 C -0.19 -3.31 5.56 -104.42 -0.58 -3.89 16 8 C 0.07 1.19 5.88 -29.03 -0.17 1.02 16 9 C 0.07 1.65 7.36 -154.74 -1.14 0.51 16 10 N -0.35 -8.70 12.15 32.84 0.40 -8.30 16 11 N -0.15 -4.10 13.38 60.35 0.81 -3.29 16 12 N -0.11 -3.22 11.91 60.35 0.72 -2.50 16 13 N -0.15 -3.95 3.77 -8.88 -0.03 -3.98 16 14 C -0.31 -7.25 9.42 -14.67 -0.14 -7.39 16 15 H 0.13 2.58 4.89 -52.48 -0.26 2.33 16 16 C 0.05 1.12 5.50 -17.52 -0.10 1.03 16 17 N -0.75 -19.16 11.94 55.50 0.66 -18.49 16 18 Si 0.94 16.62 29.55 -169.99 -5.02 11.60 16 19 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 20 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 21 H -0.26 -4.22 7.11 56.52 0.40 -3.82 16 22 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.10 1.61 5.11 -51.93 -0.27 1.35 16 25 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 1.11 7.44 -51.93 -0.39 0.72 16 28 H 0.09 1.43 7.22 -51.93 -0.38 1.06 16 29 H 0.09 1.43 7.54 -51.93 -0.39 1.04 16 30 H 0.29 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 269.57 15.07 4.06 4.06 Total: -1.00 -31.42 269.57 -2.56 -33.97 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -2.50 Total: 2.61 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -2.24 Total: -10.80 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 2.96 Total: -43.14 kcal Atomic # 8 Polarization: 1.51 SS G_CDS: 0.19 Total: 1.70 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.02 Total: 11.60 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.42 -2.56 -33.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213280415.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.345 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds