Wall clock time and date at job start Mon Mar 30 2020 03:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30174 * 126.80206 * 2 1 4 4 O 1.20918 * 111.60615 * 180.25162 * 3 2 1 5 5 C 1.34038 * 111.56333 * 359.74842 * 4 3 2 6 6 C 1.50704 * 126.77583 * 179.97438 * 5 4 3 7 7 C 1.35445 * 106.44927 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.00751 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.47292 * 275.45229 * 8 7 5 10 10 N 1.30732 * 126.40983 * 82.22341 * 9 8 7 11 11 N 1.28404 * 110.68203 * 180.02562 * 10 9 8 12 12 N 1.28938 * 110.31841 * 359.97438 * 11 10 9 13 13 N 1.35567 * 126.40680 * 262.23055 * 9 8 7 14 14 C 1.37610 * 127.43009 * 359.97438 * 13 9 8 15 15 H 1.08005 * 119.99812 * 3.62165 * 14 13 9 16 16 C 1.39017 * 120.00229 * 183.62266 * 14 13 9 17 17 N 1.31232 * 120.00331 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 120.00036 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47195 * 89.99684 * 18 16 14 20 20 H 1.48499 * 109.46955 * 209.99694 * 18 16 14 21 21 H 1.48499 * 109.46860 * 329.99789 * 18 16 14 22 22 H 1.09004 * 109.46892 * 264.54625 * 1 2 3 23 23 H 1.09003 * 109.47132 * 24.54488 * 1 2 3 24 24 H 1.09001 * 109.47070 * 144.54966 * 1 2 3 25 25 H 1.08997 * 109.47408 * 274.96074 * 6 5 4 26 26 H 1.08996 * 109.46937 * 34.96364 * 6 5 4 27 27 H 1.09000 * 109.47156 * 154.96212 * 6 5 4 28 28 H 1.08997 * 109.47213 * 155.45378 * 8 7 5 29 29 H 1.08997 * 109.47289 * 35.45182 * 8 7 5 30 30 H 0.97002 * 120.00832 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7254 -0.0049 5 6 3.6024 -0.6067 -0.0035 6 6 4.9022 -1.3695 -0.0089 7 6 2.3540 -1.1320 0.0038 8 6 1.9591 -2.5864 0.0077 9 6 1.9503 -3.1083 -1.4061 10 7 2.9870 -3.5206 -2.0875 11 7 2.6354 -3.9007 -3.2625 12 7 1.3628 -3.7613 -3.4160 13 7 0.8658 -3.2381 -2.2091 14 6 -0.4400 -2.9254 -1.9080 15 1 -0.6816 -2.4730 -0.9575 16 6 -1.4483 -3.1918 -2.8273 17 7 -1.1548 -3.7410 -3.9825 18 14 -3.2209 -2.7667 -2.4188 19 1 -3.5151 -1.3833 -2.8713 20 1 -4.1295 -3.7170 -3.1091 21 1 -3.4272 -2.8619 -0.9513 22 1 -0.3633 -0.0977 1.0231 23 1 -0.3633 0.9348 -0.4269 24 1 -0.3633 -0.8372 -0.5960 25 1 5.2553 -1.4785 -1.0343 26 1 5.6448 -0.8261 0.5753 27 1 4.7465 -2.3557 0.4285 28 1 0.9641 -2.6915 0.4400 29 1 2.6749 -3.1556 0.6006 30 1 -1.8582 -3.9266 -4.6241 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213280415.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:43 Heat of formation + Delta-G solvation = 134.624769 kcal Electronic energy + Delta-G solvation = -18252.481799 eV Core-core repulsion = 15280.528871 eV Total energy + Delta-G solvation = -2971.952928 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.097 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.86353 -42.97057 -36.96182 -36.29134 -34.69115 -33.78182 -32.59977 -29.99962 -29.48777 -28.11263 -27.62422 -24.04636 -23.24133 -21.72395 -20.99819 -19.97704 -18.64503 -17.89392 -17.63468 -16.69790 -16.11306 -15.55951 -15.28592 -14.94200 -14.39394 -14.17803 -13.91478 -13.84966 -13.66474 -13.51538 -13.19553 -13.10247 -12.92706 -12.86342 -12.17123 -12.05899 -12.03952 -11.83053 -11.09085 -10.80604 -10.76214 -10.36180 -10.04671 -8.79835 -6.77072 0.51031 0.87233 1.22812 1.37830 1.56929 1.60175 1.98161 1.99268 2.25723 2.49989 2.83723 3.28602 3.59323 3.76721 3.98462 4.13565 4.33340 4.45369 4.60463 4.65299 4.71123 4.77373 4.79325 4.90444 4.96429 5.03140 5.25417 5.30216 5.36306 5.51313 5.85475 6.46997 6.94733 7.32464 8.20583 8.45994 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.022659 B = 0.009133 C = 0.006968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.424654 B = 3064.925742 C = 4017.354906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.025 3.975 3 N -0.400 5.400 4 O 0.079 5.921 5 C -0.013 4.013 6 C -0.067 4.067 7 C -0.211 4.211 8 C 0.074 3.926 9 C 0.070 3.930 10 N -0.350 5.350 11 N -0.180 5.180 12 N -0.163 5.163 13 N -0.164 5.164 14 C -0.319 4.319 15 H 0.165 0.835 16 C 0.002 3.998 17 N -0.800 5.800 18 Si 1.015 2.985 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.226 1.226 22 H 0.110 0.890 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.122 0.878 30 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 5.022 11.989 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 N -0.110 5.110 4 O 0.019 5.981 5 C -0.077 4.077 6 C -0.124 4.124 7 C -0.216 4.216 8 C 0.033 3.967 9 C -0.197 4.197 10 N -0.212 5.212 11 N -0.170 5.170 12 N -0.148 5.148 13 N 0.055 4.945 14 C -0.458 4.458 15 H 0.182 0.818 16 C -0.215 4.215 17 N -0.427 5.427 18 Si 0.831 3.169 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.148 1.148 22 H 0.128 0.872 23 H 0.095 0.905 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.140 0.860 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.385 5.685 10.592 12.027 hybrid contribution -1.240 -0.410 -0.102 1.310 sum -1.626 5.276 10.490 11.854 Atomic orbital electron populations 1.20534 0.84569 1.04483 1.05089 1.23910 1.00149 0.88374 1.00936 1.73757 0.89749 1.24717 1.22802 1.84708 1.21483 1.23321 1.68623 1.24871 0.99564 0.83092 1.00157 1.20470 0.88632 0.98871 1.04402 1.20892 0.92315 0.96935 1.11447 1.18001 1.05008 0.87798 0.85876 1.25116 0.83627 1.11931 0.99059 1.73555 1.27141 1.19818 1.00720 1.77538 1.07229 1.20251 1.11940 1.82952 1.02927 1.25445 1.03507 1.47828 1.08620 1.30398 1.07617 1.21248 0.77950 1.40514 1.06119 0.81842 1.27134 1.06925 0.93678 0.93807 1.70251 1.37533 1.28533 1.06361 0.84646 0.71903 0.78923 0.81453 1.18374 1.19780 1.14825 0.87195 0.90499 0.89426 0.90155 0.87356 0.87695 0.87302 0.86041 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.46 10.36 71.24 0.74 -1.72 16 2 C 0.03 0.85 7.33 43.58 0.32 1.17 16 3 N -0.40 -14.24 12.07 -49.56 -0.60 -14.84 16 4 O 0.08 2.65 11.20 71.66 0.80 3.45 16 5 C -0.01 -0.41 7.49 25.04 0.19 -0.22 16 6 C -0.07 -1.55 10.33 71.24 0.74 -0.81 16 7 C -0.21 -6.99 5.56 -19.74 -0.11 -7.09 16 8 C 0.07 2.43 5.88 29.10 0.17 2.60 16 9 C 0.07 3.19 7.36 137.89 1.01 4.20 16 10 N -0.35 -17.69 12.15 -50.01 -0.61 -18.29 16 11 N -0.18 -10.31 13.38 37.02 0.50 -9.81 16 12 N -0.16 -9.69 11.91 37.02 0.44 -9.25 16 13 N -0.16 -8.51 3.77 -181.99 -0.69 -9.19 16 14 C -0.32 -14.55 9.42 83.97 0.79 -13.76 16 15 H 0.16 6.04 4.89 -2.91 -0.01 6.03 16 16 C 0.00 0.07 5.50 84.97 0.47 0.53 16 17 N -0.80 -41.30 11.94 21.66 0.26 -41.04 16 18 Si 1.01 32.03 29.55 68.60 2.03 34.06 16 19 H -0.26 -7.99 7.11 99.48 0.71 -7.28 16 20 H -0.27 -8.70 7.11 99.48 0.71 -8.00 16 21 H -0.23 -6.05 7.11 99.48 0.71 -5.34 16 22 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 23 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.09 2.60 5.11 -2.39 -0.01 2.59 16 25 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.10 2.21 7.44 -2.39 -0.02 2.20 16 28 H 0.11 3.12 7.22 -2.39 -0.02 3.10 16 29 H 0.12 3.29 7.54 -2.39 -0.02 3.27 16 30 H 0.29 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -70.13 269.57 7.64 -62.49 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 1.19 Total: 17.55 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 4.31 Total: -15.12 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -0.70 Total: -102.43 kcal Atomic # 8 Polarization: 2.65 SS G_CDS: 0.80 Total: 3.45 kcal Atomic # 14 Polarization: 32.03 SS G_CDS: 2.03 Total: 34.06 kcal Total: -70.13 7.64 -62.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213280415.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.113 kcal (2) G-P(sol) polarization free energy of solvation -70.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds