Wall clock time and date at job start Mon Mar 30 2020 04:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00545 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00295 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00006 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47316 * 179.97438 * 10 9 7 12 12 C 1.38254 * 119.88784 * 269.72082 * 11 10 9 13 13 C 1.38343 * 120.21003 * 179.74924 * 12 11 10 14 14 C 1.38459 * 119.71591 * 0.51930 * 13 12 11 15 15 C 1.38750 * 120.07086 * 359.76589 * 14 13 12 16 16 C 1.38342 * 119.88780 * 89.99662 * 11 10 9 17 17 O 1.36471 * 119.62141 * 179.97438 * 15 14 13 18 18 C 1.42905 * 115.91950 * 68.32382 * 17 15 14 19 19 C 1.52068 * 110.76655 * 275.60308 * 18 17 15 20 20 C 1.52059 * 112.37619 * 64.79587 * 19 18 17 21 21 O 1.36472 * 120.32454 * 179.74438 * 14 13 12 22 22 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 23 23 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 24 24 H 1.09007 * 109.47081 * 299.99904 * 10 9 7 25 25 H 1.09001 * 109.47147 * 60.00061 * 10 9 7 26 26 H 1.07991 * 119.89382 * 359.97438 * 12 11 10 27 27 H 1.08008 * 120.14243 * 180.24114 * 13 12 11 28 28 H 1.07995 * 120.14694 * 359.94694 * 16 11 10 29 29 H 1.08991 * 109.22453 * 35.93279 * 18 17 15 30 30 H 1.09001 * 109.21742 * 155.27631 * 18 17 15 31 31 H 1.08995 * 108.90251 * 185.54615 * 19 18 17 32 32 H 1.09004 * 108.89703 * 304.14651 * 19 18 17 33 33 H 1.08994 * 109.21979 * 55.51193 * 20 19 18 34 34 H 1.09005 * 109.21535 * 174.84524 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 6 1.0786 -4.8022 0.0117 12 6 0.6404 -5.3267 1.2134 13 6 -0.2625 -6.3748 1.2276 14 6 -0.7181 -6.9044 0.0322 15 6 -0.2738 -6.3819 -1.1739 16 6 0.6255 -5.3291 -1.1846 17 8 -0.7285 -6.9113 -2.3467 18 6 -2.1094 -6.6879 -2.6390 19 6 -2.9803 -7.7325 -1.9588 20 6 -2.9192 -7.6387 -0.4424 21 8 -1.6049 -7.9418 0.0317 22 1 -0.4849 0.8401 0.0004 23 1 0.3555 -2.3880 0.0092 24 1 2.6812 -3.7166 -0.8876 25 1 2.6880 -3.7126 0.8924 26 1 1.0013 -4.9146 2.1441 27 1 -0.6071 -6.7812 2.1672 28 1 0.9714 -4.9208 -2.1227 29 1 -2.3953 -5.6973 -2.2857 30 1 -2.2611 -6.7412 -3.7171 31 1 -4.0128 -7.5947 -2.2798 32 1 -2.6456 -8.7241 -2.2637 33 1 -3.1880 -6.6284 -0.1343 34 1 -3.6280 -8.3453 -0.0104 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258687669.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:31 Heat of formation + Delta-G solvation = -58.549360 kcal Electronic energy + Delta-G solvation = -17864.494714 eV Core-core repulsion = 14955.412720 eV Total energy + Delta-G solvation = -2909.081994 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.85238 -39.08040 -38.46598 -36.37864 -34.10455 -33.13349 -31.55986 -30.33692 -27.74336 -26.78024 -24.62779 -23.80017 -22.54897 -22.07212 -19.51883 -19.17880 -17.97889 -17.83267 -16.71068 -16.43619 -16.37993 -15.92285 -15.27478 -15.11379 -15.06494 -14.91427 -14.76501 -13.99879 -13.87973 -13.33789 -12.96641 -12.79742 -12.74133 -12.53549 -12.18126 -12.01934 -11.83217 -11.77549 -11.37881 -10.98488 -10.91361 -9.84135 -9.43451 -9.03066 -7.95308 -5.25514 0.05330 0.20637 1.49045 1.50801 1.59396 2.26718 2.47836 2.58863 2.88034 3.38496 3.71632 3.72003 3.89587 3.91346 4.20870 4.22241 4.27364 4.31788 4.35100 4.38229 4.43703 4.66877 4.76246 4.81894 4.91889 5.00032 5.08139 5.15431 5.26598 5.49158 5.55060 5.65621 6.11374 6.25411 6.55049 7.32462 8.04014 8.29964 9.28228 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.034881 B = 0.004891 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.533548 B = 5723.696155 C = 5968.268927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.073 4.073 3 Si 0.976 3.024 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.248 4.248 8 H 0.080 0.920 9 N -0.739 5.739 10 C 0.189 3.811 11 C -0.082 4.082 12 C -0.096 4.096 13 C -0.114 4.114 14 C 0.054 3.946 15 C 0.053 3.947 16 C -0.112 4.112 17 O -0.340 6.340 18 C 0.047 3.953 19 C -0.179 4.179 20 C 0.048 3.952 21 O -0.334 6.334 22 H 0.252 0.748 23 H 0.373 0.627 24 H 0.031 0.969 25 H 0.041 0.959 26 H 0.144 0.856 27 H 0.158 0.842 28 H 0.127 0.873 29 H 0.051 0.949 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 -16.303 -1.241 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.265 4.265 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.379 4.379 8 H 0.098 0.902 9 N -0.381 5.381 10 C 0.064 3.936 11 C -0.083 4.083 12 C -0.115 4.115 13 C -0.132 4.132 14 C 0.010 3.990 15 C 0.009 3.991 16 C -0.131 4.131 17 O -0.257 6.257 18 C -0.028 4.028 19 C -0.216 4.216 20 C -0.026 4.026 21 O -0.251 6.251 22 H 0.060 0.940 23 H 0.205 0.795 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.161 0.839 27 H 0.176 0.824 28 H 0.145 0.855 29 H 0.069 0.931 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.832 -16.499 -1.323 17.549 hybrid contribution -0.163 1.296 -0.192 1.321 sum -5.995 -15.203 -1.515 16.412 Atomic orbital electron populations 1.69834 1.06741 1.26151 1.59365 1.25590 0.96379 1.01148 1.03430 0.85100 0.77757 0.79210 0.77438 1.21427 1.22161 1.19203 1.19685 0.91689 0.85029 1.41510 0.90233 1.42525 1.05541 1.00540 1.89527 1.19742 0.92080 0.82644 0.99179 1.20035 0.98596 0.96677 0.92970 1.21200 0.96704 0.95456 0.98141 1.21272 0.98615 0.95646 0.97704 1.19232 0.95749 0.91540 0.92497 1.19175 0.99034 0.95191 0.85659 1.21038 0.98927 0.94206 0.98912 1.86296 1.27967 1.75195 1.36225 1.22943 0.78922 0.98356 1.02529 1.22436 1.02597 1.00952 0.95635 1.22964 0.82053 1.02802 0.94776 1.86324 1.21753 1.31949 1.85118 0.93960 0.79486 0.95069 0.94083 0.83859 0.82414 0.85492 0.93094 0.85820 0.86005 0.90128 0.92644 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 0.98 45.94 29.55 68.60 2.03 47.96 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 9 N -0.74 -38.15 5.59 -347.17 -1.94 -40.09 16 10 C 0.19 7.80 6.38 85.63 0.55 8.35 16 11 C -0.08 -2.97 5.25 -19.83 -0.10 -3.07 16 12 C -0.10 -3.04 9.69 22.30 0.22 -2.82 16 13 C -0.11 -3.25 10.01 22.35 0.22 -3.03 16 14 C 0.05 1.66 5.73 22.44 0.13 1.79 16 15 C 0.05 1.77 5.73 22.45 0.13 1.90 16 16 C -0.11 -3.97 9.66 22.35 0.22 -3.76 16 17 O -0.34 -10.56 10.16 -84.21 -0.86 -11.41 16 18 C 0.05 1.05 6.51 71.67 0.47 1.52 16 19 C -0.18 -3.06 5.92 29.98 0.18 -2.89 16 20 C 0.05 0.94 6.51 71.67 0.47 1.41 16 21 O -0.33 -9.20 10.17 -84.22 -0.86 -10.06 16 22 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 23 H 0.37 20.74 7.66 -92.71 -0.71 20.03 16 24 H 0.03 1.28 8.08 -2.38 -0.02 1.26 16 25 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 26 H 0.14 4.12 8.06 -2.92 -0.02 4.09 16 27 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 28 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 29 H 0.05 1.23 7.93 -2.39 -0.02 1.21 16 30 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.12 7.93 -2.39 -0.02 1.11 16 34 H 0.13 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -67.85 289.30 2.82 -65.03 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.39 Total: 25.26 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 3.77 Total: -17.38 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -1.66 Total: -99.41 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -1.71 Total: -21.47 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -67.85 2.82 -65.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258687669.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.483 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds