Wall clock time and date at job start Mon Mar 30 2020 04:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00192 * 2 1 4 4 H 1.48496 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46570 * 299.99610 * 3 2 1 6 6 H 1.48497 * 109.47457 * 59.99241 * 3 2 1 7 7 C 1.37879 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00414 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46649 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47654 * 305.00180 * 10 9 7 12 12 N 1.46898 * 109.47152 * 65.00526 * 10 9 7 13 13 C 1.50699 * 109.46827 * 185.00259 * 10 9 7 14 14 C 1.38261 * 119.94433 * 279.99981 * 13 10 9 15 15 C 1.38197 * 120.11321 * 180.02562 * 14 13 10 16 16 C 1.38695 * 120.06560 * 0.28535 * 15 14 13 17 17 C 1.38978 * 119.82249 * 359.29921 * 16 15 14 18 18 C 1.38199 * 119.94677 * 99.98038 * 13 10 9 19 19 O 1.36106 * 120.78522 * 180.59065 * 17 16 15 20 20 C 1.43179 * 116.71373 * 343.02377 * 19 17 16 21 21 C 1.53460 * 108.26211 * 46.16979 * 20 19 17 22 22 O 1.36108 * 119.39317 * 179.97438 * 16 15 14 23 23 H 0.96994 * 119.99611 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47016 * 60.00455 * 9 7 2 25 25 H 1.08994 * 109.47710 * 299.99833 * 9 7 2 26 26 H 1.00903 * 110.99984 * 296.04102 * 12 10 9 27 27 H 1.00904 * 111.00170 * 59.99682 * 12 10 9 28 28 H 1.07998 * 119.93806 * 0.03139 * 14 13 10 29 29 H 1.08002 * 119.96327 * 180.02562 * 15 14 13 30 30 H 1.08006 * 119.96196 * 359.97438 * 18 13 10 31 31 H 1.08997 * 109.70497 * 165.86633 * 20 19 17 32 32 H 1.09006 * 109.69833 * 286.47807 * 20 19 17 33 33 H 1.09003 * 109.70639 * 59.97393 * 21 20 19 34 34 H 1.09000 * 109.71117 * 180.60259 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9295 -3.5553 -0.8412 12 7 3.0083 -3.6540 1.2558 13 6 1.4959 -4.9636 -0.1234 14 6 0.8945 -5.5224 0.9892 15 6 0.2069 -6.7161 0.8797 16 6 0.1232 -7.3599 -0.3460 17 6 0.7203 -6.7939 -1.4661 18 6 1.4105 -5.5966 -1.3489 19 8 0.6402 -7.4028 -2.6807 20 6 0.2624 -8.7838 -2.6848 21 6 -0.9436 -8.9552 -1.7514 22 8 -0.5570 -8.5351 -0.4382 23 1 -0.4849 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6240 -2.5568 0.8902 26 1 3.5701 -2.8193 1.3321 27 1 2.3960 -3.7518 2.0518 28 1 0.9623 -5.0250 1.9454 29 1 -0.2623 -7.1501 1.7502 30 1 1.8805 -5.1576 -2.2166 31 1 -0.0091 -9.0877 -3.6957 32 1 1.0929 -9.3930 -2.3279 33 1 -1.7721 -8.3414 -2.1049 34 1 -1.2449 -10.0025 -1.7285 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259590088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:57 Heat of formation + Delta-G solvation = -79.158606 kcal Electronic energy + Delta-G solvation = -17828.784544 eV Core-core repulsion = 14918.808866 eV Total energy + Delta-G solvation = -2909.975678 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.17841 -39.47688 -38.19466 -36.59099 -34.44861 -31.86782 -31.63044 -29.88011 -29.27122 -26.53292 -25.25340 -23.77969 -22.79846 -20.88919 -19.60348 -18.67251 -18.16506 -17.88717 -16.80183 -16.59740 -16.37166 -15.86706 -15.48188 -15.33450 -14.80944 -14.68965 -14.47288 -14.27215 -14.16659 -13.67490 -13.16107 -13.03848 -12.71889 -12.35245 -12.16916 -12.05564 -11.95102 -11.68549 -11.43721 -11.13730 -10.61435 -9.64020 -9.40195 -8.90792 -8.20788 -6.33097 0.32552 0.35664 1.40150 1.41595 1.54045 2.07991 2.30736 2.40028 2.74157 3.12529 3.33933 3.70584 3.83412 3.97671 4.09649 4.17544 4.22343 4.36168 4.45680 4.53169 4.60388 4.69955 4.85053 4.97617 5.14384 5.16811 5.39920 5.48357 5.63414 5.74671 5.78772 5.94378 6.16371 6.40601 6.45760 6.75246 6.83674 7.37018 8.90497 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.039818 B = 0.004777 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.035336 B = 5860.607657 C = 6014.872160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.067 0.933 9 C 0.010 3.990 10 C 0.143 3.857 11 H 0.070 0.930 12 N -0.827 5.827 13 C -0.062 4.062 14 C -0.109 4.109 15 C -0.113 4.113 16 C 0.031 3.969 17 C 0.044 3.956 18 C -0.129 4.129 19 O -0.327 6.327 20 C 0.013 3.987 21 C 0.014 3.986 22 O -0.320 6.320 23 H 0.262 0.738 24 H -0.015 1.015 25 H -0.003 1.003 26 H 0.346 0.654 27 H 0.336 0.664 28 H 0.138 0.862 29 H 0.154 0.846 30 H 0.129 0.871 31 H 0.154 0.846 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 -17.680 -2.163 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.182 1.182 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.086 0.914 9 C -0.028 4.028 10 C 0.031 3.969 11 H 0.089 0.911 12 N -0.356 5.356 13 C -0.063 4.063 14 C -0.127 4.127 15 C -0.132 4.132 16 C -0.014 4.014 17 C -0.001 4.001 18 C -0.148 4.148 19 O -0.242 6.242 20 C -0.061 4.061 21 C -0.061 4.061 22 O -0.235 6.235 23 H 0.071 0.929 24 H 0.003 0.997 25 H 0.015 0.985 26 H 0.160 0.840 27 H 0.149 0.851 28 H 0.156 0.844 29 H 0.172 0.828 30 H 0.147 0.853 31 H 0.172 0.828 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.079 -18.293 -2.489 18.461 hybrid contribution -0.594 1.913 -0.086 2.005 sum -0.516 -16.380 -2.575 16.589 Atomic orbital electron populations 1.70125 1.07935 1.27645 1.51570 1.25948 0.95619 1.03305 0.94689 0.85399 0.79296 0.78861 0.77477 1.18190 1.20968 1.20566 1.21600 0.93574 0.91615 1.50523 0.91444 1.19683 0.94598 0.93426 0.95140 1.20183 0.93383 0.89659 0.93679 0.91137 1.59241 1.27522 1.45547 1.03266 1.19802 0.97830 0.95840 0.92855 1.20843 0.97698 0.95246 0.98941 1.20615 1.01504 0.94806 0.96241 1.18910 0.98491 0.89497 0.94527 1.18816 1.00492 0.95535 0.85207 1.20352 1.01342 0.94810 0.98303 1.86272 1.85664 1.26785 1.25463 1.23990 0.97841 0.79628 1.04688 1.23958 0.96634 1.04598 0.80869 1.86247 1.70860 1.34858 1.31540 0.92888 0.99699 0.98478 0.84034 0.85132 0.84447 0.82841 0.85300 0.82831 0.90041 0.90749 0.82351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.54 -29.18 8.55 25.60 0.22 -28.96 16 8 H 0.07 3.48 7.14 -2.91 -0.02 3.46 16 9 C 0.01 0.53 4.60 29.85 0.14 0.67 16 10 C 0.14 5.98 2.99 44.17 0.13 6.11 16 11 H 0.07 3.02 8.00 -2.39 -0.02 3.00 16 12 N -0.83 -30.58 9.02 -171.80 -1.55 -32.13 16 13 C -0.06 -2.41 4.95 -19.87 -0.10 -2.50 16 14 C -0.11 -3.74 9.29 22.27 0.21 -3.53 16 15 C -0.11 -3.51 9.96 22.37 0.22 -3.29 16 16 C 0.03 0.97 6.49 22.56 0.15 1.11 16 17 C 0.04 1.50 6.49 22.56 0.15 1.65 16 18 C -0.13 -4.80 9.58 22.37 0.21 -4.58 16 19 O -0.33 -9.57 10.42 -82.54 -0.86 -10.43 16 20 C 0.01 0.23 7.26 72.14 0.52 0.76 16 21 C 0.01 0.24 7.26 72.14 0.52 0.77 16 22 O -0.32 -8.45 10.42 -82.55 -0.86 -9.31 16 23 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 24 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 25 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 26 H 0.35 12.89 7.90 -89.69 -0.71 12.19 16 27 H 0.34 11.70 7.34 -89.69 -0.66 11.04 16 28 H 0.14 4.35 6.66 -2.91 -0.02 4.33 16 29 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 30 H 0.13 4.69 8.03 -2.91 -0.02 4.66 16 31 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.16 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -68.00 287.19 1.64 -66.36 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.24 Total: 27.23 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 2.84 Total: -31.20 kcal Atomic # 7 Polarization: -86.92 SS G_CDS: -1.26 Total: -88.19 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -1.72 Total: -19.75 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -68.00 1.64 -66.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.796 kcal (2) G-P(sol) polarization free energy of solvation -68.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds