Wall clock time and date at job start Mon Mar 30 2020 03:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30178 * 126.79939 * 2 1 4 4 O 1.20927 * 111.60398 * 179.97438 * 3 2 1 5 5 C 1.34041 * 111.56541 * 359.76291 * 4 3 2 6 6 C 1.35456 * 106.44891 * 0.37854 * 5 4 3 7 7 C 1.50699 * 128.00839 * 179.90996 * 6 5 4 8 8 C 1.53005 * 109.46758 * 100.33673 * 7 6 5 9 9 H 1.08996 * 110.50493 * 51.52800 * 8 7 6 10 10 C 1.51564 * 110.55899 * 288.63526 * 8 7 6 11 11 O 1.21293 * 127.14186 * 61.44709 * 10 8 7 12 12 N 1.34777 * 105.71378 * 241.42580 * 10 8 7 13 13 N 1.39182 * 111.43946 * 359.77934 * 12 10 8 14 14 C 1.31439 * 112.34151 * 0.40342 * 13 12 10 15 15 C 1.39100 * 126.64222 * 179.88857 * 14 13 12 16 16 H 1.08006 * 120.00306 * 179.68755 * 15 14 13 17 17 C 1.40586 * 120.00326 * 359.67895 * 15 14 13 18 18 N 1.30558 * 119.99906 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00426 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47454 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46922 * 300.00261 * 19 17 15 22 22 H 1.48505 * 109.47051 * 59.99802 * 19 17 15 23 23 H 1.09003 * 109.47032 * 264.89513 * 1 2 3 24 24 H 1.08994 * 109.47064 * 24.89687 * 1 2 3 25 25 H 1.09002 * 109.46709 * 144.89387 * 1 2 3 26 26 H 1.07997 * 126.77667 * 180.28392 * 5 4 3 27 27 H 1.08997 * 109.47248 * 340.33357 * 7 6 5 28 28 H 1.08998 * 109.46800 * 220.32989 * 7 6 5 29 29 H 0.96997 * 124.28628 * 180.02562 * 12 10 8 30 30 H 0.97001 * 119.99980 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7254 0.0005 5 6 3.6025 -0.6067 0.0061 6 6 2.3540 -1.1321 0.0006 7 6 1.9592 -2.5864 0.0016 8 6 1.5684 -3.0077 1.4196 9 1 0.8319 -2.3189 1.8333 10 6 2.7929 -3.0804 2.3098 11 8 3.5442 -2.1726 2.5972 12 7 2.8732 -4.3629 2.7161 13 7 1.8352 -5.1283 2.1929 14 6 1.0334 -4.4246 1.4250 15 6 -0.0919 -4.8898 0.7526 16 1 -0.6799 -4.2125 0.1509 17 6 -0.4639 -6.2416 0.8560 18 7 0.2467 -7.0603 1.5836 19 14 -1.9747 -6.8665 -0.0475 20 1 -2.1493 -8.3160 0.2235 21 1 -3.1737 -6.1274 0.4231 22 1 -1.8024 -6.6524 -1.5069 23 1 -0.3633 -0.0914 1.0236 24 1 -0.3633 0.9321 -0.4326 25 1 -0.3633 -0.8408 -0.5910 26 1 4.5339 -1.1533 0.0120 27 1 2.7997 -3.1913 -0.3386 28 1 1.1114 -2.7331 -0.6676 29 1 3.5648 -4.7082 3.3021 30 1 -0.0102 -7.9929 1.6553 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259659808.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:27 Heat of formation + Delta-G solvation = 37.316542 kcal Electronic energy + Delta-G solvation = -17986.170638 eV Core-core repulsion = 14977.705358 eV Total energy + Delta-G solvation = -3008.465280 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.80971 -41.33243 -37.79919 -36.50615 -35.37635 -33.97837 -32.19989 -30.43342 -29.47821 -27.80095 -26.42464 -22.71476 -22.18486 -22.03523 -21.06333 -18.55407 -18.41935 -18.23708 -18.08388 -16.63978 -16.53728 -15.82697 -15.49452 -15.12254 -14.68719 -14.31859 -14.05659 -13.81487 -13.42610 -13.28797 -13.13575 -12.84205 -12.79428 -12.61944 -12.27090 -12.01673 -11.88415 -11.17698 -11.05908 -10.72904 -10.18686 -9.84655 -9.42606 -8.46456 -6.58940 0.61916 1.17237 1.38038 1.54803 1.65142 1.65855 2.28040 2.30444 2.39619 2.68730 3.28971 3.37342 3.54578 3.68489 3.89966 4.10217 4.29557 4.42131 4.50947 4.63034 4.72756 4.87010 4.91064 5.03724 5.05302 5.21161 5.34769 5.45690 6.08465 6.32574 6.72445 6.90492 7.33887 7.45179 8.08479 8.45886 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.026426 B = 0.007252 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.290801 B = 3860.312747 C = 4680.954161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.021 3.979 3 N -0.398 5.398 4 O 0.080 5.920 5 C -0.035 4.035 6 C -0.206 4.206 7 C 0.006 3.994 8 C -0.116 4.116 9 H 0.107 0.893 10 C 0.468 3.532 11 O -0.582 6.582 12 N -0.571 5.571 13 N -0.396 5.396 14 C 0.185 3.815 15 C -0.431 4.431 16 H 0.116 0.884 17 C 0.029 3.971 18 N -0.775 5.775 19 Si 0.990 3.010 20 H -0.280 1.280 21 H -0.255 1.255 22 H -0.252 1.252 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.101 0.899 26 H 0.229 0.771 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.414 0.586 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 4.777 -6.213 8.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 N -0.108 5.108 4 O 0.020 5.980 5 C -0.116 4.116 6 C -0.210 4.210 7 C -0.032 4.032 8 C -0.139 4.139 9 H 0.124 0.876 10 C 0.253 3.747 11 O -0.464 6.464 12 N -0.308 5.308 13 N -0.223 5.223 14 C 0.024 3.976 15 C -0.471 4.471 16 H 0.134 0.866 17 C -0.194 4.194 18 N -0.400 5.400 19 Si 0.810 3.190 20 H -0.206 1.206 21 H -0.180 1.180 22 H -0.176 1.176 23 H 0.101 0.899 24 H 0.104 0.896 25 H 0.119 0.881 26 H 0.245 0.755 27 H 0.087 0.913 28 H 0.128 0.872 29 H 0.255 0.745 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.873 5.560 -5.575 8.093 hybrid contribution 0.127 -0.752 0.277 0.811 sum -1.746 4.809 -5.298 7.365 Atomic orbital electron populations 1.20326 0.84009 1.04940 1.04144 1.23979 1.00329 0.88043 1.01494 1.73743 0.89892 1.25086 1.22099 1.84712 1.21468 1.23621 1.68227 1.26072 1.01575 0.82896 1.01085 1.21315 0.92766 0.97518 1.09403 1.19379 1.02736 0.87676 0.93441 1.21401 0.96392 0.98888 0.97262 0.87559 1.21740 0.87186 0.83569 0.82157 1.90597 1.49648 1.42923 1.63278 1.47914 1.28104 1.07835 1.46937 1.77466 1.03696 1.15187 1.25942 1.21709 0.94348 0.88254 0.93268 1.18982 1.06976 0.95378 1.25739 0.86649 1.27030 1.00692 0.96690 0.94995 1.69920 1.35985 1.05663 1.28449 0.85117 0.77200 0.77245 0.79439 1.20551 1.17951 1.17595 0.89916 0.89576 0.88085 0.75519 0.91321 0.87214 0.74480 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.86 10.39 71.24 0.74 -1.12 16 2 C 0.02 0.66 7.33 43.58 0.32 0.98 16 3 N -0.40 -13.69 12.07 -49.54 -0.60 -14.29 16 4 O 0.08 2.66 11.20 71.62 0.80 3.46 16 5 C -0.04 -1.11 11.44 67.18 0.77 -0.34 16 6 C -0.21 -6.76 4.98 -19.73 -0.10 -6.86 16 7 C 0.01 0.22 5.20 29.85 0.16 0.37 16 8 C -0.12 -4.70 2.95 -11.77 -0.03 -4.73 16 9 H 0.11 4.21 8.14 -2.39 -0.02 4.20 16 10 C 0.47 21.01 8.04 87.93 0.71 21.71 16 11 O -0.58 -27.50 16.76 -3.07 -0.05 -27.56 16 12 N -0.57 -26.21 7.10 -172.80 -1.23 -27.44 16 13 N -0.40 -20.16 10.60 -46.97 -0.50 -20.66 16 14 C 0.18 8.64 6.37 43.06 0.27 8.92 16 15 C -0.43 -19.07 9.20 23.05 0.21 -18.86 16 16 H 0.12 4.36 7.86 -2.91 -0.02 4.34 16 17 C 0.03 1.26 5.51 85.45 0.47 1.73 16 18 N -0.77 -37.94 11.94 21.94 0.26 -37.68 16 19 Si 0.99 32.58 29.57 68.60 2.03 34.61 16 20 H -0.28 -9.27 7.11 99.48 0.71 -8.57 16 21 H -0.26 -8.04 7.11 99.48 0.71 -7.33 16 22 H -0.25 -7.82 7.11 99.48 0.71 -7.11 16 23 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.23 5.95 8.06 -2.91 -0.02 5.93 16 27 H 0.07 2.37 8.12 -2.39 -0.02 2.35 16 28 H 0.11 3.29 8.01 -2.39 -0.02 3.27 16 29 H 0.41 17.23 8.96 -213.91 -1.92 15.31 16 30 H 0.29 12.78 8.29 -92.71 -0.77 12.01 16 Total: -1.00 -61.04 273.81 3.50 -57.54 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: -0.73 Total: 30.22 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 3.51 Total: 1.80 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -2.06 Total: -100.07 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: 0.75 Total: -24.09 kcal Atomic # 14 Polarization: 32.58 SS G_CDS: 2.03 Total: 34.61 kcal Total: -61.04 3.50 -57.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259659808.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.857 kcal (2) G-P(sol) polarization free energy of solvation -61.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds