Wall clock time and date at job start Mon Mar 30 2020 03:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29997 * 126.87452 * 2 1 4 4 O 1.20843 * 111.97400 * 180.30822 * 3 2 1 5 5 C 1.33887 * 111.87971 * 359.70008 * 4 3 2 6 6 C 1.50703 * 126.87648 * 180.02562 * 5 4 3 7 7 C 1.36709 * 106.24379 * 0.02562 * 5 4 3 8 8 C 1.48323 * 128.17267 * 180.02562 * 7 5 4 9 9 N 1.30826 * 126.42732 * 0.02562 * 8 7 5 10 10 O 1.21280 * 110.09035 * 179.70801 * 9 8 7 11 11 C 1.33670 * 110.03726 * 0.43271 * 10 9 8 12 12 C 1.50700 * 126.42978 * 179.84057 * 11 10 9 13 13 C 1.50702 * 109.46869 * 269.68151 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 12 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 N 1.30971 * 107.13647 * 359.57042 * 11 10 9 22 22 H 1.09002 * 109.46943 * 270.17256 * 1 2 3 23 23 H 1.09000 * 109.46715 * 30.17537 * 1 2 3 24 24 H 1.08996 * 109.46762 * 150.17656 * 1 2 3 25 25 H 1.08996 * 109.47372 * 269.97626 * 6 5 4 26 26 H 1.09003 * 109.47096 * 29.97933 * 6 5 4 27 27 H 1.09006 * 109.46621 * 149.97748 * 6 5 4 28 28 H 1.09004 * 109.47210 * 149.68444 * 12 11 10 29 29 H 1.08994 * 109.47551 * 29.68096 * 12 11 10 30 30 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2871 1.0399 0.0000 4 8 3.4549 0.7292 -0.0060 5 6 3.6176 -0.5998 -0.0045 6 6 4.9241 -1.3509 -0.0100 7 6 2.3613 -1.1388 0.0030 8 6 1.9787 -2.5719 0.0080 9 7 2.7953 -3.5940 0.0066 10 8 2.1656 -4.6304 0.0177 11 6 0.8545 -4.3697 0.0181 12 6 -0.2597 -5.3843 0.0266 13 6 -0.6386 -5.7262 -1.3914 14 1 -0.1238 -5.2560 -2.2163 15 6 -1.6383 -6.6438 -1.6357 16 7 -1.9653 -6.9462 -2.8732 17 14 -2.5283 -7.4574 -0.2090 18 1 -3.7106 -6.6413 0.1669 19 1 -2.9725 -8.8158 -0.6128 20 1 -1.6093 -7.5621 0.9527 21 7 0.7201 -3.0669 0.0155 22 1 -0.3633 0.0031 1.0277 23 1 -0.3633 0.8884 -0.5166 24 1 -0.3633 -0.8915 -0.5111 25 1 5.2335 -1.5342 -1.0389 26 1 5.6854 -0.7594 0.4985 27 1 4.7981 -2.3025 0.5066 28 1 -1.1248 -4.9696 0.5439 29 1 0.0736 -6.2857 0.5409 30 1 -2.6688 -7.5915 -3.0450 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259709449.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:21 Heat of formation + Delta-G solvation = 119.184853 kcal Electronic energy + Delta-G solvation = -17495.572973 eV Core-core repulsion = 14490.657769 eV Total energy + Delta-G solvation = -3004.915204 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.08230 -44.87670 -36.02012 -34.64367 -33.99148 -33.27127 -31.87215 -29.19349 -28.54185 -28.05120 -24.80956 -23.93959 -22.31812 -21.03452 -19.65353 -17.92504 -17.64064 -17.58697 -16.74786 -16.42015 -14.98783 -14.64180 -14.08115 -13.64584 -13.45629 -13.18822 -13.16123 -12.79820 -12.56296 -12.45138 -12.33292 -11.78356 -11.67691 -11.23000 -11.18161 -10.79223 -10.48214 -10.40164 -9.94794 -9.73831 -9.47350 -8.82252 -8.80674 -6.29386 -4.34510 0.99737 1.67116 2.12572 2.84372 3.11241 3.16264 3.22943 3.24859 3.50545 3.77982 4.18390 4.21007 4.32634 4.45738 5.00151 5.11765 5.21599 5.29833 5.44773 5.55016 5.65068 5.69199 5.85038 5.89019 6.15749 6.31844 6.42553 6.53616 6.73077 7.25122 8.16928 8.17084 8.65745 8.69707 9.24266 10.82641 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.035783 B = 0.005384 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.303934 B = 5199.154310 C = 5597.205316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.065 3.935 3 N -0.369 5.369 4 O 0.098 5.902 5 C 0.009 3.991 6 C -0.076 4.076 7 C -0.128 4.128 8 C 0.238 3.762 9 N -0.395 5.395 10 O 0.071 5.929 11 C 0.252 3.748 12 C 0.069 3.931 13 C -0.531 4.531 14 H 0.078 0.922 15 C 0.081 3.919 16 N -0.886 5.886 17 Si 0.877 3.123 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.261 1.261 21 N -0.491 5.491 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.585 8.924 7.530 14.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 N -0.078 5.078 4 O 0.038 5.962 5 C -0.058 4.058 6 C -0.133 4.133 7 C -0.134 4.134 8 C -0.032 4.032 9 N -0.107 5.107 10 O 0.014 5.986 11 C 0.033 3.967 12 C 0.030 3.970 13 C -0.569 4.569 14 H 0.096 0.904 15 C -0.124 4.124 16 N -0.522 5.522 17 Si 0.703 3.297 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.186 1.186 21 N -0.225 5.225 22 H 0.100 0.900 23 H 0.093 0.907 24 H 0.120 0.880 25 H 0.111 0.889 26 H 0.104 0.896 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.895 10.570 7.408 15.676 hybrid contribution -0.736 -1.374 0.463 1.626 sum 8.158 9.196 7.871 14.597 Atomic orbital electron populations 1.20314 0.84808 1.04706 1.03840 1.23572 0.99373 0.86860 0.99765 1.73718 0.88980 1.23499 1.21566 1.84756 1.21701 1.21799 1.67909 1.24568 0.97741 0.83816 0.99642 1.20486 0.88969 0.99185 1.04706 1.17913 0.92201 0.89409 1.13875 1.22352 0.85983 0.92729 1.02161 1.74753 1.20334 0.92503 1.23082 1.85245 1.19192 1.28053 1.66112 1.29451 0.85513 0.92444 0.89278 1.18618 0.87214 0.90038 1.01145 1.20601 1.21139 1.26150 0.89016 0.90424 1.24855 0.95991 0.95597 0.95919 1.69858 1.30205 1.33143 1.19030 0.86817 0.80722 0.79431 0.82715 1.19626 1.20694 1.18579 1.72027 1.20674 1.06696 1.23061 0.89953 0.90658 0.88042 0.88852 0.89550 0.88048 0.91741 0.92308 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.22 36.01 0.37 -0.75 16 2 C 0.07 1.05 7.37 -81.78 -0.60 0.44 16 3 N -0.37 -5.76 12.04 33.68 0.41 -5.36 16 4 O 0.10 1.39 11.17 17.60 0.20 1.59 16 5 C 0.01 0.13 7.54 -34.86 -0.26 -0.13 16 6 C -0.08 -0.77 10.12 36.01 0.36 -0.41 16 7 C -0.13 -2.14 6.31 -104.72 -0.66 -2.80 16 8 C 0.24 4.51 8.02 -156.08 -1.25 3.26 16 9 N -0.39 -7.41 10.73 30.98 0.33 -7.07 16 10 O 0.07 1.41 11.29 18.04 0.20 1.61 16 11 C 0.25 5.22 7.68 -12.99 -0.10 5.12 16 12 C 0.07 1.48 4.67 -29.03 -0.14 1.35 16 13 C -0.53 -13.94 9.65 -34.44 -0.33 -14.27 16 14 H 0.08 2.28 7.98 -52.49 -0.42 1.87 16 15 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.89 -25.42 13.96 55.43 0.77 -24.64 16 17 Si 0.88 19.19 27.47 -169.99 -4.67 14.52 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.26 -5.29 6.54 56.52 0.37 -4.92 16 21 N -0.49 -10.05 10.32 -9.87 -0.10 -10.15 16 22 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.10 1.60 7.09 -51.93 -0.37 1.24 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.10 1.14 6.93 -51.93 -0.36 0.78 16 28 H 0.06 1.32 7.58 -51.93 -0.39 0.93 16 29 H 0.06 1.17 7.19 -51.93 -0.37 0.80 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 272.42 15.07 4.11 4.11 Total: -1.00 -29.24 272.42 -4.24 -33.47 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -2.77 Total: -1.93 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.71 Total: -6.14 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 1.41 Total: -47.23 kcal Atomic # 8 Polarization: 2.80 SS G_CDS: 0.40 Total: 3.20 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.67 Total: 14.52 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.24 -4.24 -33.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259709449.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.659 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds