Wall clock time and date at job start Mon Mar 30 2020 03:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29997 * 126.87452 * 2 1 4 4 O 1.20843 * 111.97400 * 180.30822 * 3 2 1 5 5 C 1.33887 * 111.87971 * 359.70008 * 4 3 2 6 6 C 1.50703 * 126.87648 * 180.02562 * 5 4 3 7 7 C 1.36709 * 106.24379 * 0.02562 * 5 4 3 8 8 C 1.48323 * 128.17267 * 180.02562 * 7 5 4 9 9 N 1.30826 * 126.42732 * 0.02562 * 8 7 5 10 10 O 1.21280 * 110.09035 * 179.70801 * 9 8 7 11 11 C 1.33670 * 110.03726 * 0.43271 * 10 9 8 12 12 C 1.50700 * 126.42978 * 179.84057 * 11 10 9 13 13 C 1.50702 * 109.46869 * 269.68151 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 12 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 N 1.30971 * 107.13647 * 359.57042 * 11 10 9 22 22 H 1.09002 * 109.46943 * 270.17256 * 1 2 3 23 23 H 1.09000 * 109.46715 * 30.17537 * 1 2 3 24 24 H 1.08996 * 109.46762 * 150.17656 * 1 2 3 25 25 H 1.08996 * 109.47372 * 269.97626 * 6 5 4 26 26 H 1.09003 * 109.47096 * 29.97933 * 6 5 4 27 27 H 1.09006 * 109.46621 * 149.97748 * 6 5 4 28 28 H 1.09004 * 109.47210 * 149.68444 * 12 11 10 29 29 H 1.08994 * 109.47551 * 29.68096 * 12 11 10 30 30 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2871 1.0399 0.0000 4 8 3.4549 0.7292 -0.0060 5 6 3.6176 -0.5998 -0.0045 6 6 4.9241 -1.3509 -0.0100 7 6 2.3613 -1.1388 0.0030 8 6 1.9787 -2.5719 0.0080 9 7 2.7953 -3.5940 0.0066 10 8 2.1656 -4.6304 0.0177 11 6 0.8545 -4.3697 0.0181 12 6 -0.2597 -5.3843 0.0266 13 6 -0.6386 -5.7262 -1.3914 14 1 -0.1238 -5.2560 -2.2163 15 6 -1.6383 -6.6438 -1.6357 16 7 -1.9653 -6.9462 -2.8732 17 14 -2.5283 -7.4574 -0.2090 18 1 -3.7106 -6.6413 0.1669 19 1 -2.9725 -8.8158 -0.6128 20 1 -1.6093 -7.5621 0.9527 21 7 0.7201 -3.0669 0.0155 22 1 -0.3633 0.0031 1.0277 23 1 -0.3633 0.8884 -0.5166 24 1 -0.3633 -0.8915 -0.5111 25 1 5.2335 -1.5342 -1.0389 26 1 5.6854 -0.7594 0.4985 27 1 4.7981 -2.3025 0.5066 28 1 -1.1248 -4.9696 0.5439 29 1 0.0736 -6.2857 0.5409 30 1 -2.6688 -7.5915 -3.0450 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259709449.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:21 Heat of formation + Delta-G solvation = 99.856232 kcal Electronic energy + Delta-G solvation = -17496.411125 eV Core-core repulsion = 14490.657769 eV Total energy + Delta-G solvation = -3005.753356 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.50712 -46.16682 -37.42344 -36.19133 -35.35614 -34.76354 -33.51513 -30.91066 -29.73700 -29.07839 -26.15744 -25.75412 -23.85494 -22.42062 -20.90463 -19.50862 -18.98724 -18.97192 -18.54963 -17.77913 -16.60384 -16.13908 -15.53308 -15.03467 -14.55335 -14.41734 -14.27844 -14.17828 -14.15552 -13.63795 -13.45610 -13.32799 -13.16401 -12.98077 -12.46691 -12.43724 -12.09419 -11.87237 -11.73564 -11.31998 -10.83203 -10.80825 -10.16687 -8.32828 -6.44885 -0.28144 0.32238 0.70669 1.47308 1.48055 1.58488 1.66564 1.69511 1.92932 2.36928 2.46121 2.80902 3.02917 3.14484 3.28795 3.85707 4.12804 4.16041 4.40996 4.54047 4.57616 4.60300 4.62333 4.77661 4.79399 4.83684 5.00930 5.08246 5.20761 5.33739 6.09650 6.58089 7.00220 7.10733 7.18492 8.83305 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.035783 B = 0.005384 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.303934 B = 5199.154310 C = 5597.205316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.058 3.942 3 N -0.379 5.379 4 O 0.106 5.894 5 C 0.037 3.963 6 C -0.077 4.077 7 C -0.171 4.171 8 C 0.242 3.758 9 N -0.391 5.391 10 O 0.065 5.935 11 C 0.241 3.759 12 C 0.074 3.926 13 C -0.539 4.539 14 H 0.025 0.975 15 C 0.021 3.979 16 N -0.941 5.941 17 Si 0.952 3.048 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.227 1.227 21 N -0.502 5.502 22 H 0.095 0.905 23 H 0.092 0.908 24 H 0.080 0.920 25 H 0.108 0.892 26 H 0.123 0.877 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.265 9.255 9.600 16.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 N -0.088 5.088 4 O 0.047 5.953 5 C -0.030 4.030 6 C -0.134 4.134 7 C -0.177 4.177 8 C -0.029 4.029 9 N -0.104 5.104 10 O 0.010 5.990 11 C 0.023 3.977 12 C 0.035 3.965 13 C -0.578 4.578 14 H 0.044 0.956 15 C -0.178 4.178 16 N -0.579 5.579 17 Si 0.773 3.227 18 H -0.188 1.188 19 H -0.209 1.209 20 H -0.149 1.149 21 N -0.236 5.236 22 H 0.113 0.887 23 H 0.110 0.890 24 H 0.099 0.901 25 H 0.127 0.873 26 H 0.141 0.859 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.604 10.911 9.491 17.360 hybrid contribution -0.819 -1.356 -0.279 1.608 sum 8.786 9.555 9.212 15.917 Atomic orbital electron populations 1.20318 0.84021 1.04456 1.04613 1.23836 1.00163 0.86781 0.99564 1.73704 0.89355 1.23452 1.22242 1.84755 1.21189 1.21893 1.67448 1.25164 0.98226 0.83498 0.96127 1.20721 0.87937 0.98778 1.05976 1.18069 0.93839 0.88562 1.17255 1.22658 0.85391 0.93727 1.01100 1.74731 1.19945 0.92243 1.23509 1.85229 1.18850 1.28567 1.66339 1.29307 0.85816 0.92562 0.90056 1.18518 0.88208 0.91418 0.98344 1.20744 1.20882 1.25881 0.90275 0.95611 1.25891 0.96752 0.96113 0.99058 1.70025 1.31414 1.34440 1.22065 0.85647 0.79798 0.77741 0.79529 1.18769 1.20917 1.14919 1.72017 1.21724 1.06710 1.23168 0.88662 0.88972 0.90097 0.87337 0.85905 0.88942 0.89982 0.89742 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.12 10.22 71.24 0.73 -1.39 16 2 C 0.06 1.79 7.37 43.86 0.32 2.11 16 3 N -0.38 -11.28 12.04 -48.50 -0.58 -11.86 16 4 O 0.11 2.79 11.17 73.16 0.82 3.61 16 5 C 0.04 0.96 7.54 25.33 0.19 1.15 16 6 C -0.08 -1.35 10.12 71.24 0.72 -0.62 16 7 C -0.17 -5.56 6.31 -19.92 -0.13 -5.69 16 8 C 0.24 9.06 8.02 137.24 1.10 10.16 16 9 N -0.39 -14.44 10.73 -59.04 -0.63 -15.07 16 10 O 0.07 2.55 11.29 74.62 0.84 3.40 16 11 C 0.24 9.95 7.68 88.36 0.68 10.63 16 12 C 0.07 3.10 4.67 29.10 0.14 3.23 16 13 C -0.54 -28.88 9.65 25.60 0.25 -28.63 16 14 H 0.03 1.59 7.98 -2.91 -0.02 1.57 16 15 C 0.02 1.13 5.47 84.66 0.46 1.59 16 16 N -0.94 -55.55 13.96 21.45 0.30 -55.25 16 17 Si 0.95 38.49 27.47 68.60 1.88 40.37 16 18 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 19 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.23 -7.87 6.54 99.48 0.65 -7.22 16 21 N -0.50 -20.53 10.32 -302.41 -3.12 -23.65 16 22 H 0.09 2.33 8.14 -2.39 -0.02 2.32 16 23 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.08 2.58 7.09 -2.39 -0.02 2.56 16 25 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 1.87 6.93 -2.38 -0.02 1.85 16 28 H 0.08 3.18 7.58 -2.38 -0.02 3.16 16 29 H 0.08 3.12 7.19 -2.39 -0.02 3.11 16 30 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -64.87 272.42 5.09 -59.77 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 1.12 Total: 6.15 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 4.46 Total: -7.46 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -4.04 Total: -105.84 kcal Atomic # 8 Polarization: 5.35 SS G_CDS: 1.66 Total: 7.01 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.88 Total: 40.37 kcal Total: -64.87 5.09 -59.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259709449.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.631 kcal (2) G-P(sol) polarization free energy of solvation -64.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds