Wall clock time and date at job start Mon Mar 30 2020 03:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34332 * 126.44667 * 2 1 4 4 N 1.34472 * 107.67239 * 180.02562 * 3 2 1 5 5 C 1.30261 * 108.70100 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.62030 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.46893 * 90.02960 * 6 5 4 8 8 H 1.08996 * 110.62125 * 52.18709 * 7 6 5 9 9 C 1.51565 * 110.66735 * 289.43139 * 7 6 5 10 10 O 1.21293 * 127.14240 * 61.49461 * 9 7 6 11 11 N 1.34778 * 105.71509 * 241.73685 * 9 7 6 12 12 N 1.39173 * 111.44132 * 359.75568 * 11 9 7 13 13 C 1.31439 * 112.34318 * 0.02562 * 12 11 9 14 14 C 1.39106 * 126.64450 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99897 * 179.75340 * 14 13 12 16 16 C 1.40585 * 120.00190 * 0.02562 * 14 13 12 17 17 N 1.30561 * 119.99719 * 359.72969 * 16 14 13 18 18 Si 1.86798 * 119.99901 * 179.72929 * 16 14 13 19 19 H 1.48490 * 109.47339 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 120.00340 * 18 16 14 21 21 H 1.48504 * 109.46636 * 239.99899 * 18 16 14 22 22 O 1.33967 * 108.75728 * 0.23470 * 5 4 3 23 23 H 1.08999 * 109.47697 * 89.97819 * 1 2 3 24 24 H 1.09004 * 109.47459 * 209.97853 * 1 2 3 25 25 H 1.09005 * 109.47556 * 329.97251 * 1 2 3 26 26 H 1.08000 * 126.16164 * 359.97438 * 3 2 1 27 27 H 1.09005 * 109.47010 * 330.03012 * 6 5 4 28 28 H 1.08996 * 109.47089 * 210.03303 * 6 5 4 29 29 H 0.97002 * 124.28285 * 179.78534 * 11 9 7 30 30 H 0.97000 * 119.99594 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 -0.0006 5 6 3.5765 -0.6548 -0.0004 6 6 4.8004 -1.5341 -0.0014 7 6 5.2154 -1.8320 1.4407 8 1 4.3706 -2.2173 2.0116 9 6 5.7797 -0.5905 2.1023 10 8 5.2051 0.4591 2.3007 11 7 7.0542 -0.8931 2.4195 12 7 7.3773 -2.1933 2.0425 13 6 6.3692 -2.8127 1.4700 14 6 6.3646 -4.1149 0.9809 15 1 5.4698 -4.5198 0.5315 16 6 7.5228 -4.9060 1.0767 17 7 8.6044 -4.4165 1.6200 18 14 7.5142 -6.6572 0.4267 19 1 6.1762 -6.9696 -0.1363 20 1 8.5433 -6.7963 -0.6347 21 1 7.8162 -7.5980 1.5353 22 8 2.3074 -1.0840 -0.0049 23 1 -0.3634 0.0004 -1.0276 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3634 0.8897 0.5143 26 1 1.9821 2.1112 -0.0004 27 1 5.6144 -1.0231 -0.5156 28 1 4.5759 -2.4687 -0.5154 29 1 7.6685 -0.2822 2.8557 30 1 9.4037 -4.9622 1.6858 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259776333.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:43 Heat of formation + Delta-G solvation = 24.083564 kcal Electronic energy + Delta-G solvation = -17745.384712 eV Core-core repulsion = 14736.345607 eV Total energy + Delta-G solvation = -3009.039105 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.92019 -39.48213 -35.90414 -34.33486 -33.59977 -33.35011 -31.47538 -29.35570 -26.55011 -25.95658 -24.25747 -21.88429 -20.79008 -20.24076 -19.39906 -16.81744 -16.49904 -16.32157 -16.07484 -15.00394 -14.93603 -14.33660 -13.84735 -13.48945 -13.43189 -13.12768 -12.98520 -12.57391 -12.25519 -11.83258 -11.64339 -11.36056 -11.22890 -10.88345 -10.85646 -10.48648 -10.32521 -9.98835 -9.35323 -9.27868 -8.28126 -8.02078 -7.55912 -6.71992 -4.72225 1.77526 2.85222 2.98969 3.05659 3.09243 3.11388 3.33754 3.86629 4.08160 4.42638 4.50628 4.96442 5.10802 5.16590 5.25300 5.36896 5.41768 5.53304 5.67081 5.79031 5.98518 6.15555 6.18483 6.36080 6.46657 6.71154 6.94760 7.23499 7.90198 8.11357 8.21089 8.49472 8.72014 9.29787 9.90550 10.18800 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.027928 B = 0.006492 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.331824 B = 4311.965953 C = 5135.685537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.071 4.071 3 C -0.039 4.039 4 N -0.458 5.458 5 C 0.201 3.799 6 C 0.013 3.987 7 C -0.129 4.129 8 H 0.105 0.895 9 C 0.474 3.526 10 O -0.545 6.545 11 N -0.574 5.574 12 N -0.349 5.349 13 C 0.200 3.800 14 C -0.419 4.419 15 H 0.092 0.908 16 C 0.071 3.929 17 N -0.732 5.732 18 Si 0.914 3.086 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.273 1.273 22 O -0.203 6.203 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.176 0.824 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.410 0.590 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.813 1.034 -4.279 10.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.124 4.124 3 C -0.178 4.178 4 N -0.185 5.185 5 C -0.006 4.006 6 C -0.026 4.026 7 C -0.154 4.154 8 H 0.122 0.878 9 C 0.258 3.742 10 O -0.424 6.424 11 N -0.313 5.313 12 N -0.174 5.174 13 C 0.037 3.963 14 C -0.459 4.459 15 H 0.110 0.890 16 C -0.155 4.155 17 N -0.357 5.357 18 Si 0.738 3.262 19 H -0.182 1.182 20 H -0.198 1.198 21 H -0.199 1.199 22 O -0.091 6.091 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.193 0.807 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.250 0.750 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.480 1.917 -3.805 9.490 hybrid contribution -1.078 -0.632 -0.107 1.254 sum -9.557 1.285 -3.912 10.407 Atomic orbital electron populations 1.20160 0.84538 1.03947 1.03187 1.23310 0.94794 0.85044 1.09246 1.23035 0.88299 0.99948 1.06558 1.70514 1.22209 1.09172 1.16620 1.26384 0.83967 0.90459 0.99775 1.19735 0.88472 0.97606 0.96776 1.21492 1.01050 0.97111 0.95766 0.87753 1.21333 0.84144 0.88504 0.80212 1.90682 1.66215 1.27512 1.57946 1.47818 1.11116 1.15014 1.57311 1.77441 1.20752 0.88655 1.30525 1.21258 0.87136 0.93448 0.94446 1.18489 0.98700 0.94075 1.34634 0.89002 1.26018 0.94809 1.00469 0.94213 1.69823 1.01257 1.36653 1.28002 0.86147 0.79632 0.81219 0.79177 1.18241 1.19802 1.19860 1.84361 1.18037 1.36472 1.70218 0.90326 0.90644 0.89451 0.80704 0.87825 0.87453 0.74987 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 10.43 36.00 0.38 -0.22 16 2 C -0.07 -1.09 7.39 -35.69 -0.26 -1.35 16 3 C -0.04 -0.66 11.80 -17.77 -0.21 -0.87 16 4 N -0.46 -9.49 10.28 -11.10 -0.11 -9.60 16 5 C 0.20 3.97 7.03 -12.94 -0.09 3.88 16 6 C 0.01 0.25 5.33 -27.89 -0.15 0.11 16 7 C -0.13 -2.86 2.95 -92.13 -0.27 -3.13 16 8 H 0.10 2.25 8.14 -51.93 -0.42 1.82 16 9 C 0.47 11.46 8.04 -10.56 -0.08 11.37 16 10 O -0.55 -14.19 16.60 5.55 0.09 -14.09 16 11 N -0.57 -13.73 7.10 31.45 0.22 -13.51 16 12 N -0.35 -9.09 10.60 33.80 0.36 -8.73 16 13 C 0.20 4.90 6.37 -82.07 -0.52 4.38 16 14 C -0.42 -9.85 9.22 -38.37 -0.35 -10.20 16 15 H 0.09 1.94 7.86 -52.48 -0.41 1.53 16 16 C 0.07 1.64 5.51 -17.21 -0.09 1.54 16 17 N -0.73 -18.27 11.94 55.58 0.66 -17.60 16 18 Si 0.91 17.02 29.57 -169.99 -5.03 12.00 16 19 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 20 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 21 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 22 O -0.20 -3.67 10.77 5.36 0.06 -3.61 16 23 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.18 2.35 8.06 -52.49 -0.42 1.92 16 27 H 0.10 2.05 8.12 -51.93 -0.42 1.63 16 28 H 0.11 1.81 8.03 -51.93 -0.42 1.40 16 29 H 0.41 8.82 8.96 -183.29 -1.64 7.18 16 30 H 0.28 6.32 8.29 -40.82 -0.34 5.99 16 LS Contribution 274.14 15.07 4.13 4.13 Total: -1.00 -31.53 274.14 -5.42 -36.95 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -4.14 Total: 8.56 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -1.67 Total: 5.50 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 1.13 Total: -49.44 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: 0.15 Total: -17.70 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.53 -5.42 -36.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776333.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.035 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds