Wall clock time and date at job start Mon Mar 30 2020 03:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34332 * 126.44667 * 2 1 4 4 N 1.34472 * 107.67239 * 180.02562 * 3 2 1 5 5 C 1.30261 * 108.70100 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.62030 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.46893 * 90.02960 * 6 5 4 8 8 H 1.08996 * 110.62125 * 52.18709 * 7 6 5 9 9 C 1.51565 * 110.66735 * 289.43139 * 7 6 5 10 10 O 1.21293 * 127.14240 * 61.49461 * 9 7 6 11 11 N 1.34778 * 105.71509 * 241.73685 * 9 7 6 12 12 N 1.39173 * 111.44132 * 359.75568 * 11 9 7 13 13 C 1.31439 * 112.34318 * 0.02562 * 12 11 9 14 14 C 1.39106 * 126.64450 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99897 * 179.75340 * 14 13 12 16 16 C 1.40585 * 120.00190 * 0.02562 * 14 13 12 17 17 N 1.30561 * 119.99719 * 359.72969 * 16 14 13 18 18 Si 1.86798 * 119.99901 * 179.72929 * 16 14 13 19 19 H 1.48490 * 109.47339 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 120.00340 * 18 16 14 21 21 H 1.48504 * 109.46636 * 239.99899 * 18 16 14 22 22 O 1.33967 * 108.75728 * 0.23470 * 5 4 3 23 23 H 1.08999 * 109.47697 * 89.97819 * 1 2 3 24 24 H 1.09004 * 109.47459 * 209.97853 * 1 2 3 25 25 H 1.09005 * 109.47556 * 329.97251 * 1 2 3 26 26 H 1.08000 * 126.16164 * 359.97438 * 3 2 1 27 27 H 1.09005 * 109.47010 * 330.03012 * 6 5 4 28 28 H 1.08996 * 109.47089 * 210.03303 * 6 5 4 29 29 H 0.97002 * 124.28285 * 179.78534 * 11 9 7 30 30 H 0.97000 * 119.99594 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 -0.0006 5 6 3.5765 -0.6548 -0.0004 6 6 4.8004 -1.5341 -0.0014 7 6 5.2154 -1.8320 1.4407 8 1 4.3706 -2.2173 2.0116 9 6 5.7797 -0.5905 2.1023 10 8 5.2051 0.4591 2.3007 11 7 7.0542 -0.8931 2.4195 12 7 7.3773 -2.1933 2.0425 13 6 6.3692 -2.8127 1.4700 14 6 6.3646 -4.1149 0.9809 15 1 5.4698 -4.5198 0.5315 16 6 7.5228 -4.9060 1.0767 17 7 8.6044 -4.4165 1.6200 18 14 7.5142 -6.6572 0.4267 19 1 6.1762 -6.9696 -0.1363 20 1 8.5433 -6.7963 -0.6347 21 1 7.8162 -7.5980 1.5353 22 8 2.3074 -1.0840 -0.0049 23 1 -0.3634 0.0004 -1.0276 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3634 0.8897 0.5143 26 1 1.9821 2.1112 -0.0004 27 1 5.6144 -1.0231 -0.5156 28 1 4.5759 -2.4687 -0.5154 29 1 7.6685 -0.2822 2.8557 30 1 9.4037 -4.9622 1.6858 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259776333.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:43 Heat of formation + Delta-G solvation = -0.263465 kcal Electronic energy + Delta-G solvation = -17746.440478 eV Core-core repulsion = 14736.345607 eV Total energy + Delta-G solvation = -3010.094872 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.26457 -41.33502 -37.82216 -35.74455 -35.41091 -34.81222 -32.78374 -31.07233 -27.97054 -27.81495 -25.71459 -23.22456 -22.35593 -21.93769 -21.16399 -18.51882 -18.28575 -17.73467 -17.61326 -16.71902 -16.60042 -15.62769 -15.53251 -15.15362 -14.95703 -14.46486 -14.00384 -13.86622 -13.47978 -13.33487 -13.13015 -12.93632 -12.84613 -12.66538 -12.40428 -12.16496 -11.81961 -11.37709 -11.13938 -11.10302 -9.93199 -9.55902 -9.43735 -8.48576 -6.61718 0.46199 1.20525 1.54535 1.59358 1.69772 1.72276 1.80537 2.26516 2.29984 2.64001 3.12627 3.32942 3.48570 3.84536 3.91265 4.08365 4.15774 4.24990 4.42116 4.64555 4.68230 4.72376 4.83586 5.10996 5.17637 5.23067 5.38621 5.41532 6.07325 6.30614 6.68709 6.85454 6.86587 7.43174 8.04236 8.44390 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.027928 B = 0.006492 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.331824 B = 4311.965953 C = 5135.685537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.053 4.053 3 C -0.070 4.070 4 N -0.493 5.493 5 C 0.176 3.824 6 C 0.023 3.977 7 C -0.119 4.119 8 H 0.109 0.891 9 C 0.467 3.533 10 O -0.570 6.570 11 N -0.572 5.572 12 N -0.389 5.389 13 C 0.186 3.814 14 C -0.430 4.430 15 H 0.116 0.884 16 C 0.028 3.972 17 N -0.772 5.772 18 Si 0.994 3.006 19 H -0.243 1.243 20 H -0.271 1.271 21 H -0.273 1.273 22 O -0.210 6.210 23 H 0.104 0.896 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.202 0.798 27 H 0.091 0.909 28 H 0.131 0.869 29 H 0.415 0.585 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.813 -0.381 -5.308 12.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.106 4.106 3 C -0.208 4.208 4 N -0.221 5.221 5 C -0.030 4.030 6 C -0.016 4.016 7 C -0.144 4.144 8 H 0.126 0.874 9 C 0.252 3.748 10 O -0.450 6.450 11 N -0.310 5.310 12 N -0.216 5.216 13 C 0.025 3.975 14 C -0.470 4.470 15 H 0.134 0.866 16 C -0.195 4.195 17 N -0.398 5.398 18 Si 0.814 3.186 19 H -0.165 1.165 20 H -0.196 1.196 21 H -0.199 1.199 22 O -0.097 6.097 23 H 0.122 0.878 24 H 0.103 0.897 25 H 0.130 0.870 26 H 0.219 0.781 27 H 0.110 0.890 28 H 0.150 0.850 29 H 0.256 0.744 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.491 0.503 -4.835 11.563 hybrid contribution -0.499 -0.153 0.231 0.571 sum -10.991 0.350 -4.604 11.921 Atomic orbital electron populations 1.20490 0.80238 1.05655 1.05294 1.24389 0.96841 0.83796 1.05575 1.23567 0.87344 1.01867 1.08037 1.70442 1.24663 1.09971 1.17050 1.26183 0.84596 0.90326 1.01906 1.19602 0.88431 0.98670 0.94882 1.21411 1.00276 0.95348 0.97360 0.87352 1.21655 0.84203 0.88889 0.80098 1.90652 1.66726 1.28540 1.59112 1.47840 1.11335 1.14837 1.56983 1.77416 1.22124 0.89455 1.32627 1.21661 0.87638 0.94204 0.93980 1.19057 0.99931 0.93872 1.34136 0.86645 1.27052 0.93943 1.04812 0.93680 1.69931 1.02244 1.38753 1.28852 0.84957 0.80274 0.75113 0.78270 1.16534 1.19603 1.19855 1.84359 1.17707 1.37490 1.70170 0.87808 0.89675 0.86951 0.78077 0.89012 0.85049 0.74378 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.43 71.23 0.74 -0.20 16 2 C -0.05 -1.52 7.39 24.79 0.18 -1.33 16 3 C -0.07 -2.28 11.80 83.40 0.98 -1.29 16 4 N -0.49 -20.48 10.28 -303.83 -3.12 -23.60 16 5 C 0.18 6.94 7.03 88.34 0.62 7.56 16 6 C 0.02 0.89 5.33 29.85 0.16 1.05 16 7 C -0.12 -5.31 2.95 -11.77 -0.03 -5.34 16 8 H 0.11 4.68 8.14 -2.39 -0.02 4.66 16 9 C 0.47 23.08 8.04 87.93 0.71 23.79 16 10 O -0.57 -30.33 16.60 -3.07 -0.05 -30.38 16 11 N -0.57 -28.13 7.10 -172.80 -1.23 -29.36 16 12 N -0.39 -20.71 10.60 -46.96 -0.50 -21.21 16 13 C 0.19 9.15 6.37 43.07 0.27 9.42 16 14 C -0.43 -19.80 9.22 23.05 0.21 -19.58 16 15 H 0.12 4.61 7.86 -2.91 -0.02 4.59 16 16 C 0.03 1.25 5.51 85.45 0.47 1.72 16 17 N -0.77 -38.58 11.94 21.94 0.26 -38.31 16 18 Si 0.99 33.46 29.57 68.60 2.03 35.49 16 19 H -0.24 -7.50 7.11 99.48 0.71 -6.79 16 20 H -0.27 -9.01 7.11 99.48 0.71 -8.30 16 21 H -0.27 -9.17 7.11 99.48 0.71 -8.46 16 22 O -0.21 -7.30 10.77 -3.72 -0.04 -7.34 16 23 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.20 5.08 8.06 -2.91 -0.02 5.05 16 27 H 0.09 3.72 8.12 -2.38 -0.02 3.70 16 28 H 0.13 4.31 8.03 -2.39 -0.02 4.29 16 29 H 0.42 18.55 8.96 -213.91 -1.92 16.64 16 30 H 0.29 12.95 8.29 -92.71 -0.77 12.18 16 Total: -1.00 -68.71 274.14 0.94 -67.77 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.73 Total: 31.14 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 4.32 Total: 15.80 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -4.59 Total: -112.48 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.09 Total: -37.72 kcal Atomic # 14 Polarization: 33.46 SS G_CDS: 2.03 Total: 35.49 kcal Total: -68.71 0.94 -67.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776333.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.505 kcal (2) G-P(sol) polarization free energy of solvation -68.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds