Wall clock time and date at job start Mon Mar 30 2020 03:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34948 * 126.03845 * 2 1 4 4 C 1.35316 * 107.74748 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.03955 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47169 * 89.99791 * 5 4 3 7 7 C 1.39587 * 128.15367 * 94.99628 * 6 5 4 8 8 C 1.40456 * 126.74704 * 359.95076 * 7 6 5 9 9 H 1.08002 * 119.99727 * 359.97438 * 8 7 6 10 10 C 1.40466 * 120.00145 * 180.02562 * 8 7 6 11 11 N 1.30507 * 119.99864 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99615 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47238 * 89.99661 * 12 10 8 14 14 H 1.48509 * 109.47102 * 209.99585 * 12 10 8 15 15 H 1.48502 * 109.47466 * 329.99435 * 12 10 8 16 16 O 1.34689 * 106.51246 * 179.97438 * 7 6 5 17 17 N 1.20833 * 112.07275 * 0.02562 * 16 7 6 18 18 H 0.97001 * 124.16744 * 179.97438 * 17 16 7 19 19 C 1.34705 * 111.66188 * 0.24951 * 17 16 7 20 20 O 1.22041 * 126.97033 * 179.75315 * 19 17 16 21 21 C 1.39869 * 107.91964 * 0.26032 * 4 3 2 22 22 N 1.30835 * 108.20367 * 359.55852 * 21 4 3 23 23 H 1.09000 * 109.46823 * 90.00578 * 1 2 3 24 24 H 1.08999 * 109.46814 * 209.99848 * 1 2 3 25 25 H 1.08995 * 109.47191 * 329.99909 * 1 2 3 26 26 H 1.08003 * 126.12691 * 359.97438 * 3 2 1 27 27 H 1.08999 * 109.46999 * 330.00251 * 5 4 3 28 28 H 1.08998 * 109.47347 * 209.99496 * 5 4 3 29 29 H 0.97001 * 119.99371 * 180.02562 * 11 10 8 30 30 H 1.08003 * 125.89383 * 179.74046 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5453 -0.0002 6 6 5.1764 1.8373 1.4207 7 6 6.1209 1.1686 2.2012 8 6 6.8992 0.0646 1.8164 9 1 6.7953 -0.3498 0.8244 10 6 7.8120 -0.5011 2.7218 11 7 7.9372 -0.0006 3.9206 12 14 8.8465 -1.9698 2.2101 13 1 10.1185 -1.4941 1.6090 14 1 9.1440 -2.8051 3.4015 15 1 8.0997 -2.7781 1.2129 16 8 6.1389 1.7898 3.3962 17 7 5.3588 2.7114 3.4407 18 1 5.2285 3.2779 4.2173 19 6 4.6880 2.8515 2.2809 20 8 3.8351 3.6852 2.0225 21 6 3.5346 -0.7321 -0.0070 22 7 2.2892 -1.1328 -0.0006 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.9281 2.1193 -0.0004 27 1 4.5441 2.4805 -0.5133 28 1 5.5820 1.0345 -0.5145 29 1 8.5678 -0.3911 4.5457 30 1 4.4054 -1.3709 -0.0129 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259809959.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:53 Heat of formation + Delta-G solvation = 85.570060 kcal Electronic energy + Delta-G solvation = -17899.120038 eV Core-core repulsion = 14892.747187 eV Total energy + Delta-G solvation = -3006.372851 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.86024 -40.43633 -36.33366 -34.53203 -33.32583 -31.96986 -30.41301 -29.55440 -27.39591 -26.44874 -24.64192 -20.99112 -20.65164 -20.31464 -19.31832 -17.49437 -17.17225 -16.18412 -15.89523 -15.45003 -14.91514 -14.07497 -13.85498 -13.46361 -13.06309 -12.89797 -12.50929 -12.23934 -12.10092 -11.82451 -11.72188 -11.57102 -11.51736 -10.96903 -10.76949 -10.44680 -9.94819 -9.82779 -8.76122 -8.34557 -8.31090 -7.58984 -7.24065 -6.88325 -5.00507 2.53299 2.66245 2.88549 2.93461 3.09935 3.26561 3.60765 3.62422 3.95689 4.38312 4.90885 4.98741 5.35533 5.45306 5.53393 5.59190 5.73591 6.17811 6.32042 6.61560 6.66468 6.84137 6.92697 7.10133 7.27401 7.35852 7.55507 7.67226 7.75575 7.91865 8.16802 8.33789 8.35648 9.50649 9.72241 9.97698 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.008215 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.507481 B = 3407.568719 C = 4411.367349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.391 5.391 3 C 0.046 3.954 4 C -0.199 4.199 5 C 0.091 3.909 6 C -0.487 4.487 7 C 0.256 3.744 8 C -0.410 4.410 9 H 0.119 0.881 10 C 0.068 3.932 11 N -0.761 5.761 12 Si 0.928 3.072 13 H -0.262 1.262 14 H -0.273 1.273 15 H -0.253 1.253 16 O -0.015 6.015 17 N -0.596 5.596 18 H 0.431 0.569 19 C 0.493 3.507 20 O -0.610 6.610 21 C 0.056 3.944 22 N -0.317 5.317 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.167 0.833 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.293 0.707 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.277 -2.772 -3.405 5.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.175 5.175 3 C -0.098 4.098 4 C -0.210 4.210 5 C 0.052 3.948 6 C -0.495 4.495 7 C 0.202 3.798 8 C -0.439 4.439 9 H 0.136 0.864 10 C -0.157 4.157 11 N -0.385 5.385 12 Si 0.750 3.250 13 H -0.187 1.187 14 H -0.197 1.197 15 H -0.176 1.176 16 O -0.026 6.026 17 N -0.286 5.286 18 H 0.278 0.722 19 C 0.302 3.698 20 O -0.502 6.502 21 C -0.130 4.130 22 N -0.138 5.138 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.184 0.816 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.439 -3.389 -3.123 6.399 hybrid contribution 0.890 0.363 0.568 1.116 sum -3.549 -3.026 -2.555 5.318 Atomic orbital electron populations 1.21648 0.75524 1.03743 1.02363 1.48285 1.05869 1.04154 1.59229 1.22282 0.91162 0.92751 1.03615 1.20532 0.95262 0.93904 1.11273 1.17285 0.91144 0.95148 0.91269 1.20262 1.17306 1.11291 1.00627 1.20080 0.90687 0.89314 0.79719 1.19175 1.15658 1.08218 1.00897 0.86363 1.26347 0.96583 0.98716 0.94038 1.69583 1.27885 1.36103 1.04884 0.85944 0.79855 0.79502 0.79669 1.18704 1.19741 1.17603 1.84371 1.48623 1.34413 1.35196 1.43062 1.38835 1.28590 1.18128 0.72216 1.17865 0.83075 0.86857 0.82038 1.90701 1.36901 1.43607 1.78953 1.23775 0.94642 0.95131 0.99431 1.77173 1.02000 1.08465 1.26211 0.91625 0.90064 0.90117 0.81589 0.93088 0.92109 0.89589 0.80364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.34 11.47 59.84 0.69 2.03 16 2 N -0.39 -7.00 4.01 -68.17 -0.27 -7.27 16 3 C 0.05 0.88 11.40 -17.22 -0.20 0.69 16 4 C -0.20 -4.12 5.34 -105.05 -0.56 -4.68 16 5 C 0.09 1.96 6.16 -29.03 -0.18 1.78 16 6 C -0.49 -12.13 5.71 -102.81 -0.59 -12.72 16 7 C 0.26 6.47 6.89 -38.24 -0.26 6.20 16 8 C -0.41 -9.56 9.19 -37.91 -0.35 -9.91 16 9 H 0.12 2.52 7.41 -52.49 -0.39 2.13 16 10 C 0.07 1.49 5.50 -17.28 -0.10 1.40 16 11 N -0.76 -17.63 12.06 55.57 0.67 -16.96 16 12 Si 0.93 16.17 29.56 -169.99 -5.03 11.15 16 13 H -0.26 -4.51 7.11 56.52 0.40 -4.10 16 14 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 15 H -0.25 -4.30 7.11 56.52 0.40 -3.90 16 16 O -0.01 -0.38 9.56 15.43 0.15 -0.23 16 17 N -0.60 -14.11 6.72 29.14 0.20 -13.92 16 18 H 0.43 8.59 8.96 -40.82 -0.37 8.22 16 19 C 0.49 12.86 8.44 -14.98 -0.13 12.73 16 20 O -0.61 -17.00 18.08 4.88 0.09 -16.91 16 21 C 0.06 1.11 11.96 -17.37 -0.21 0.90 16 22 N -0.32 -6.27 12.58 30.62 0.39 -5.88 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.17 2.99 8.06 -52.48 -0.42 2.57 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.21 7.62 -51.93 -0.40 0.81 16 29 H 0.29 6.06 8.29 -40.82 -0.34 5.72 16 30 H 0.18 3.16 8.06 -52.48 -0.42 2.74 16 LS Contribution 276.92 15.07 4.17 4.17 Total: -1.00 -31.38 276.92 -4.34 -35.72 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -2.82 Total: 11.71 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.88 Total: -1.57 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.98 Total: -44.03 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.24 Total: -17.14 kcal Atomic # 14 Polarization: 16.17 SS G_CDS: -5.03 Total: 11.15 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.38 -4.34 -35.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259809959.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.287 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds