Wall clock time and date at job start Mon Mar 30 2020 03:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34948 * 126.03845 * 2 1 4 4 C 1.35316 * 107.74748 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.03955 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47169 * 89.99791 * 5 4 3 7 7 C 1.39587 * 128.15367 * 94.99628 * 6 5 4 8 8 C 1.40456 * 126.74704 * 359.95076 * 7 6 5 9 9 H 1.08002 * 119.99727 * 359.97438 * 8 7 6 10 10 C 1.40466 * 120.00145 * 180.02562 * 8 7 6 11 11 N 1.30507 * 119.99864 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99615 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47238 * 89.99661 * 12 10 8 14 14 H 1.48509 * 109.47102 * 209.99585 * 12 10 8 15 15 H 1.48502 * 109.47466 * 329.99435 * 12 10 8 16 16 O 1.34689 * 106.51246 * 179.97438 * 7 6 5 17 17 N 1.20833 * 112.07275 * 0.02562 * 16 7 6 18 18 H 0.97001 * 124.16744 * 179.97438 * 17 16 7 19 19 C 1.34705 * 111.66188 * 0.24951 * 17 16 7 20 20 O 1.22041 * 126.97033 * 179.75315 * 19 17 16 21 21 C 1.39869 * 107.91964 * 0.26032 * 4 3 2 22 22 N 1.30835 * 108.20367 * 359.55852 * 21 4 3 23 23 H 1.09000 * 109.46823 * 90.00578 * 1 2 3 24 24 H 1.08999 * 109.46814 * 209.99848 * 1 2 3 25 25 H 1.08995 * 109.47191 * 329.99909 * 1 2 3 26 26 H 1.08003 * 126.12691 * 359.97438 * 3 2 1 27 27 H 1.08999 * 109.46999 * 330.00251 * 5 4 3 28 28 H 1.08998 * 109.47347 * 209.99496 * 5 4 3 29 29 H 0.97001 * 119.99371 * 180.02562 * 11 10 8 30 30 H 1.08003 * 125.89383 * 179.74046 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5453 -0.0002 6 6 5.1764 1.8373 1.4207 7 6 6.1209 1.1686 2.2012 8 6 6.8992 0.0646 1.8164 9 1 6.7953 -0.3498 0.8244 10 6 7.8120 -0.5011 2.7218 11 7 7.9372 -0.0006 3.9206 12 14 8.8465 -1.9698 2.2101 13 1 10.1185 -1.4941 1.6090 14 1 9.1440 -2.8051 3.4015 15 1 8.0997 -2.7781 1.2129 16 8 6.1389 1.7898 3.3962 17 7 5.3588 2.7114 3.4407 18 1 5.2285 3.2779 4.2173 19 6 4.6880 2.8515 2.2809 20 8 3.8351 3.6852 2.0225 21 6 3.5346 -0.7321 -0.0070 22 7 2.2892 -1.1328 -0.0006 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.9281 2.1193 -0.0004 27 1 4.5441 2.4805 -0.5133 28 1 5.5820 1.0345 -0.5145 29 1 8.5678 -0.3911 4.5457 30 1 4.4054 -1.3709 -0.0129 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259809959.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:52 Heat of formation + Delta-G solvation = 64.429882 kcal Electronic energy + Delta-G solvation = -17900.036745 eV Core-core repulsion = 14892.747187 eV Total energy + Delta-G solvation = -3007.289558 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.76436 -41.89195 -38.34599 -36.29031 -34.86435 -33.50204 -32.25139 -31.29011 -28.91604 -28.10803 -26.15694 -22.81900 -22.43397 -21.75474 -20.91484 -19.39954 -18.99227 -17.96492 -17.44818 -17.08560 -16.21313 -15.90437 -15.34436 -15.13760 -14.71715 -14.33595 -14.03518 -13.89256 -13.73944 -13.33827 -13.18689 -13.12932 -13.00333 -12.69979 -12.31343 -11.94417 -11.51833 -11.39240 -10.32989 -10.18532 -10.16389 -9.12669 -8.93603 -8.81534 -6.83837 1.01155 1.08189 1.46446 1.62959 1.71397 1.83391 2.04375 2.11511 2.19881 2.48635 3.12042 3.57458 3.81065 4.14122 4.43645 4.46392 4.53425 4.66956 4.85321 4.95254 5.00397 5.13719 5.24312 5.34960 5.56484 5.72930 5.92815 5.94188 6.14485 6.28273 6.36528 6.52242 6.87688 7.53704 8.00855 8.09483 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.008215 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.507481 B = 3407.568719 C = 4411.367349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.387 5.387 3 C 0.044 3.956 4 C -0.224 4.224 5 C 0.096 3.904 6 C -0.501 4.501 7 C 0.228 3.772 8 C -0.416 4.416 9 H 0.136 0.864 10 C 0.030 3.970 11 N -0.789 5.789 12 Si 1.003 2.997 13 H -0.255 1.255 14 H -0.268 1.268 15 H -0.243 1.243 16 O -0.025 6.025 17 N -0.589 5.589 18 H 0.444 0.556 19 C 0.473 3.527 20 O -0.639 6.639 21 C 0.047 3.953 22 N -0.332 5.332 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.175 0.825 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.304 0.696 30 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.964 -4.454 -3.948 6.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.171 5.171 3 C -0.102 4.102 4 C -0.235 4.235 5 C 0.057 3.943 6 C -0.508 4.508 7 C 0.174 3.826 8 C -0.445 4.445 9 H 0.153 0.847 10 C -0.193 4.193 11 N -0.413 5.413 12 Si 0.821 3.179 13 H -0.179 1.179 14 H -0.193 1.193 15 H -0.166 1.166 16 O -0.037 6.037 17 N -0.279 5.279 18 H 0.293 0.707 19 C 0.283 3.717 20 O -0.534 6.534 21 C -0.138 4.138 22 N -0.154 5.154 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.118 0.882 26 H 0.192 0.808 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.116 0.884 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -4.149 -5.063 -3.644 7.491 hybrid contribution 0.783 0.878 0.799 1.422 sum -3.366 -4.185 -2.844 6.077 Atomic orbital electron populations 1.22094 0.72421 1.05260 1.04521 1.48693 1.07619 1.03147 1.57598 1.22454 0.91286 0.93528 1.02944 1.20535 0.95437 0.94348 1.13165 1.17253 0.92193 0.95315 0.89586 1.20693 1.17293 1.10950 1.01896 1.20573 0.91765 0.90438 0.79808 1.19695 1.15289 1.07488 1.01988 0.84652 1.27330 0.97128 1.01266 0.93529 1.69628 1.28346 1.37342 1.06019 0.84844 0.78045 0.75551 0.79505 1.17934 1.19281 1.16566 1.84344 1.48936 1.34755 1.35651 1.42987 1.38276 1.28420 1.18265 0.70674 1.18154 0.83362 0.87215 0.82936 1.90655 1.38275 1.44784 1.79703 1.23987 0.95271 0.94962 0.99566 1.77109 1.02220 1.09466 1.26653 0.89114 0.89042 0.88180 0.80777 0.93655 0.90882 0.88443 0.79038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.15 11.47 127.77 1.47 3.61 16 2 N -0.39 -13.25 4.01 -369.58 -1.48 -14.73 16 3 C 0.04 1.65 11.40 83.54 0.95 2.60 16 4 C -0.22 -9.19 5.34 -20.14 -0.11 -9.30 16 5 C 0.10 4.14 6.16 29.10 0.18 4.32 16 6 C -0.50 -25.19 5.71 -18.69 -0.11 -25.30 16 7 C 0.23 11.54 6.89 23.14 0.16 11.70 16 8 C -0.42 -18.99 9.19 23.35 0.21 -18.78 16 9 H 0.14 5.54 7.41 -2.91 -0.02 5.52 16 10 C 0.03 1.26 5.50 85.43 0.47 1.73 16 11 N -0.79 -35.82 12.06 21.91 0.26 -35.56 16 12 Si 1.00 31.04 29.56 68.60 2.03 33.07 16 13 H -0.26 -7.61 7.11 99.48 0.71 -6.91 16 14 H -0.27 -8.10 7.11 99.48 0.71 -7.39 16 15 H -0.24 -7.12 7.11 99.48 0.71 -6.42 16 16 O -0.03 -1.29 9.56 65.42 0.63 -0.66 16 17 N -0.59 -28.35 6.72 -179.85 -1.21 -29.56 16 18 H 0.44 18.03 8.96 -92.71 -0.83 17.20 16 19 C 0.47 25.14 8.44 85.10 0.72 25.86 16 20 O -0.64 -36.37 18.08 -5.45 -0.10 -36.47 16 21 C 0.05 1.82 11.96 85.24 1.02 2.84 16 22 N -0.33 -12.72 12.58 -57.02 -0.72 -13.43 16 23 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.18 6.20 8.06 -2.91 -0.02 6.18 16 27 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 2.88 7.62 -2.39 -0.02 2.86 16 29 H 0.30 12.19 8.29 -92.71 -0.77 11.42 16 30 H 0.19 6.58 8.06 -2.91 -0.02 6.56 16 Total: -1.00 -66.59 276.92 4.73 -61.85 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: 0.36 Total: 36.19 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 4.97 Total: -0.70 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -3.14 Total: -93.29 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: 0.53 Total: -37.13 kcal Atomic # 14 Polarization: 31.04 SS G_CDS: 2.03 Total: 33.07 kcal Total: -66.59 4.73 -61.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259809959.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.283 kcal (2) G-P(sol) polarization free energy of solvation -66.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds