Wall clock time and date at job start Mon Mar 30 2020 03:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35173 * 125.73930 * 2 1 4 4 C 1.40299 * 107.70601 * 180.02562 * 3 2 1 5 5 C 1.36374 * 107.31499 * 359.97438 * 4 3 2 6 6 C 1.47682 * 126.07129 * 180.02562 * 5 4 3 7 7 N 1.30985 * 125.90054 * 332.04224 * 6 5 4 8 8 O 1.41670 * 107.77920 * 179.97438 * 7 6 5 9 9 N 1.41640 * 107.68118 * 359.79115 * 8 7 6 10 10 C 1.30331 * 108.00549 * 0.35575 * 9 8 7 11 11 O 1.35549 * 125.82982 * 179.91258 * 10 9 8 12 12 C 1.34840 * 116.99964 * 356.22185 * 11 10 9 13 13 H 1.08001 * 120.00081 * 358.19841 * 12 11 10 14 14 C 1.38680 * 120.00219 * 178.20325 * 12 11 10 15 15 N 1.31527 * 120.00268 * 173.98834 * 14 12 11 16 16 Si 1.86802 * 119.99615 * 354.26241 * 14 12 11 17 17 H 1.48496 * 109.47230 * 90.28034 * 16 14 12 18 18 H 1.48506 * 109.47211 * 210.27762 * 16 14 12 19 19 H 1.48502 * 109.47448 * 330.27679 * 16 14 12 20 20 N 1.36153 * 125.74133 * 180.33228 * 2 1 3 21 21 C 1.46500 * 125.69371 * 0.02562 * 20 2 1 22 22 H 1.08998 * 109.46968 * 89.97977 * 1 2 3 23 23 H 1.09000 * 109.46635 * 209.97911 * 1 2 3 24 24 H 1.09000 * 109.47224 * 329.97664 * 1 2 3 25 25 H 1.08000 * 126.14473 * 359.97438 * 3 2 1 26 26 H 1.07996 * 126.33766 * 180.02562 * 4 3 2 27 27 H 0.97003 * 119.99649 * 180.02562 * 15 14 12 28 28 H 1.09001 * 109.46924 * 267.08406 * 21 20 2 29 29 H 1.08997 * 109.47237 * 27.09151 * 21 20 2 30 30 H 1.09000 * 109.46391 * 147.09131 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2965 1.0972 0.0000 4 6 3.6306 0.6628 -0.0006 5 6 3.6135 -0.7008 -0.0004 6 6 4.7962 -1.5852 -0.0003 7 7 5.9725 -1.2947 -0.4978 8 8 6.8179 -2.4125 -0.2906 9 7 6.0615 -3.4058 0.3783 10 6 4.8569 -2.9419 0.5581 11 8 3.8360 -3.5976 1.1625 12 6 4.0678 -4.8689 1.5476 13 1 5.0234 -5.3291 1.3439 14 6 3.0792 -5.5854 2.2052 15 7 3.2602 -6.8597 2.4758 16 14 1.4873 -4.7424 2.7000 17 1 0.4961 -4.8729 1.6020 18 1 0.9510 -5.3799 3.9294 19 1 1.7493 -3.3044 2.9621 20 7 2.3023 -1.1051 -0.0064 21 6 1.8359 -2.4938 -0.0150 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3632 -0.8902 0.5135 24 1 -0.3634 0.8898 0.5142 25 1 1.9607 2.1236 -0.0004 26 1 4.5084 1.2920 -0.0004 27 1 2.5685 -7.3609 2.9354 28 1 1.7694 -2.8611 1.0091 29 1 0.8531 -2.5442 -0.4837 30 1 2.5383 -3.1094 -0.5768 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259848922.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:00 Heat of formation + Delta-G solvation = 114.555816 kcal Electronic energy + Delta-G solvation = -18186.310133 eV Core-core repulsion = 15181.194199 eV Total energy + Delta-G solvation = -3005.115934 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.31300 -40.04838 -37.95098 -33.17695 -32.85005 -32.62759 -30.95710 -30.90270 -26.35985 -26.27893 -25.90551 -22.69965 -21.16972 -20.00509 -18.92245 -18.33963 -17.68363 -16.48461 -15.70579 -15.23193 -15.19441 -14.42761 -13.90255 -13.73631 -13.55959 -13.23166 -13.07641 -12.77434 -12.72251 -12.64164 -12.01820 -11.94241 -11.69076 -11.41804 -11.26132 -10.94983 -10.60429 -10.41905 -9.97311 -9.62203 -8.80503 -8.52624 -7.76714 -6.73546 -4.47437 1.02613 2.19562 2.71003 2.83336 2.90014 2.95456 3.02749 3.25517 3.33809 3.69193 3.86909 4.12725 4.71040 4.86030 4.95648 5.03478 5.20064 5.45565 5.49666 5.62079 5.66262 5.73526 5.84178 5.94971 6.05118 6.31978 6.36839 7.01036 7.21018 7.36092 7.43401 7.62912 7.83731 8.57217 9.00554 10.33775 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.011120 C = 0.007108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.614215 B = 2517.433406 C = 3938.064750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.039 3.961 3 C -0.205 4.205 4 C -0.136 4.136 5 C 0.053 3.947 6 C 0.162 3.838 7 N -0.278 5.278 8 O 0.008 5.992 9 N -0.352 5.352 10 C 0.246 3.754 11 O -0.182 6.182 12 C -0.392 4.392 13 H 0.117 0.883 14 C 0.075 3.925 15 N -0.854 5.854 16 Si 0.887 3.113 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.255 1.255 20 N -0.420 5.420 21 C 0.060 3.940 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.142 0.858 26 H 0.144 0.856 27 H 0.286 0.714 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.277 11.562 -3.601 14.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 C -0.230 4.230 4 C -0.163 4.163 5 C -0.059 4.059 6 C -0.022 4.022 7 N -0.023 5.023 8 O -0.123 6.123 9 N -0.136 5.136 10 C 0.030 3.970 11 O -0.075 6.075 12 C -0.470 4.470 13 H 0.135 0.865 14 C -0.132 4.132 15 N -0.491 5.491 16 Si 0.712 3.288 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.180 1.180 20 N -0.095 5.095 21 C -0.080 4.080 22 H 0.092 0.908 23 H 0.084 0.916 24 H 0.101 0.899 25 H 0.159 0.841 26 H 0.161 0.839 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.403 10.952 -3.834 13.764 hybrid contribution -1.279 -0.089 0.673 1.448 sum -8.682 10.863 -3.161 14.261 Atomic orbital electron populations 1.20361 0.87904 1.03424 1.02695 1.20512 0.93578 0.85601 1.08017 1.20554 0.92118 0.97571 1.12709 1.20919 0.97864 0.91412 1.06154 1.17168 0.81023 0.91552 1.16195 1.22361 0.92979 0.90632 0.96273 1.79923 1.00293 1.07992 1.14075 1.93168 1.30135 1.17652 1.71312 1.80350 1.03233 1.08717 1.21271 1.23957 0.88384 0.89616 0.95057 1.83820 1.29084 1.28807 1.65774 1.20908 1.04855 0.82237 1.38980 0.86507 1.24428 0.98651 0.94802 0.95320 1.69606 1.35340 1.06382 1.37778 0.86592 0.82285 0.80543 0.79366 1.18979 1.20003 1.17982 1.43928 1.04414 1.06696 1.54422 1.22521 1.01224 0.79077 1.05193 0.90845 0.91616 0.89882 0.84068 0.83856 0.90359 0.89427 0.89872 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 9.84 36.01 0.35 -0.50 16 2 C 0.04 0.54 6.89 -81.77 -0.56 -0.02 16 3 C -0.21 -2.80 10.73 -39.90 -0.43 -3.23 16 4 C -0.14 -2.15 10.81 -39.48 -0.43 -2.58 16 5 C 0.05 0.97 6.83 -82.27 -0.56 0.40 16 6 C 0.16 3.37 7.01 -80.90 -0.57 2.81 16 7 N -0.28 -5.84 13.00 34.43 0.45 -5.39 16 8 O 0.01 0.19 13.62 12.24 0.17 0.35 16 9 N -0.35 -8.68 11.85 31.82 0.38 -8.31 16 10 C 0.25 5.78 7.29 -14.71 -0.11 5.67 16 11 O -0.18 -4.42 5.00 0.64 0.00 -4.42 16 12 C -0.39 -10.56 10.18 30.90 0.31 -10.25 16 13 H 0.12 3.45 7.28 -52.49 -0.38 3.07 16 14 C 0.07 1.95 5.49 -17.52 -0.10 1.85 16 15 N -0.85 -23.23 13.96 55.48 0.77 -22.46 16 16 Si 0.89 18.96 26.02 -169.99 -4.42 14.54 16 17 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.26 -5.42 6.65 56.52 0.38 -5.05 16 20 N -0.42 -7.09 3.17 -115.72 -0.37 -7.46 16 21 C 0.06 1.01 8.81 59.85 0.53 1.54 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.64 7.63 -51.93 -0.40 0.25 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 26 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 27 H 0.29 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.09 1.64 3.16 -51.93 -0.16 1.47 16 29 H 0.08 1.08 7.49 -51.93 -0.39 0.69 16 30 H 0.09 1.68 6.52 -51.93 -0.34 1.35 16 LS Contribution 264.15 15.07 3.98 3.98 Total: -1.00 -28.88 264.15 -3.12 -32.00 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -2.52 Total: 1.45 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -1.55 Total: -4.30 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 1.23 Total: -43.60 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: 0.17 Total: -4.07 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.42 Total: 14.54 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.88 -3.12 -32.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259848922.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.555 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds