Wall clock time and date at job start Mon Mar 30 2020 03:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46807 * 125.65214 * 2 1 4 4 C 1.50675 * 106.21669 * 180.02562 * 3 2 1 5 5 N 1.31660 * 134.20102 * 180.02562 * 4 3 2 6 6 C 1.32144 * 120.73426 * 179.97438 * 5 4 3 7 7 C 1.50702 * 118.89478 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47168 * 89.99650 * 7 6 5 9 9 H 1.07999 * 120.00202 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99746 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99573 * 0.27650 * 10 8 7 12 12 Si 1.86800 * 119.99781 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46758 * 89.99934 * 12 10 8 14 14 H 1.48499 * 109.47026 * 209.99782 * 12 10 8 15 15 H 1.48496 * 109.47474 * 329.99818 * 12 10 8 16 16 N 1.31756 * 122.21168 * 0.25372 * 6 5 4 17 17 C 1.32893 * 121.05537 * 359.49969 * 16 6 5 18 18 O 1.35280 * 120.76058 * 180.27143 * 17 16 6 19 19 C 1.39726 * 106.31639 * 359.97438 * 4 3 2 20 20 C 1.34520 * 125.65579 * 180.02562 * 2 1 3 21 21 O 1.21594 * 124.85235 * 0.04169 * 20 2 1 22 22 H 1.08998 * 109.47263 * 90.00284 * 1 2 3 23 23 H 1.08999 * 109.46758 * 209.99891 * 1 2 3 24 24 H 1.09003 * 109.46829 * 329.99338 * 1 2 3 25 25 H 1.08997 * 110.10511 * 60.81220 * 3 2 1 26 26 H 1.09003 * 110.10377 * 299.18976 * 3 2 1 27 27 H 1.09000 * 109.46490 * 329.99767 * 7 6 5 28 28 H 1.08999 * 109.46382 * 209.99984 * 7 6 5 29 29 H 0.97001 * 120.00651 * 359.71956 * 11 10 8 30 30 H 0.96693 * 114.00206 * 270.19877 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3207 1.1929 0.0000 4 6 3.7416 0.6915 -0.0006 5 7 4.9213 1.2762 -0.0005 6 6 6.0308 0.5584 -0.0007 7 6 7.3589 1.2706 -0.0011 8 6 7.8019 1.5082 1.4195 9 1 7.1834 1.1770 2.2406 10 6 8.9964 2.1494 1.6710 11 7 9.7464 2.5584 0.6711 12 14 9.5452 2.4446 3.4320 13 1 10.3527 1.2891 3.8990 14 1 10.3669 3.6800 3.4939 15 1 8.3525 2.5992 4.3030 16 7 6.0149 -0.7591 -0.0060 17 6 4.8683 -1.4309 -0.0015 18 8 4.8590 -2.7836 -0.0015 19 6 3.6656 -0.7036 -0.0004 20 6 2.2492 -1.0930 -0.0005 21 8 1.8434 -2.2393 -0.0017 22 1 -0.3634 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5140 25 1 2.1335 1.7883 0.8936 26 1 2.1334 1.7883 -0.8936 27 1 7.2582 2.2265 -0.5151 28 1 8.0994 0.6579 -0.5151 29 1 9.4612 2.4054 -0.2434 30 1 4.8559 -3.1770 -0.8848 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259908089.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:50 Heat of formation + Delta-G solvation = -8.965441 kcal Electronic energy + Delta-G solvation = -17568.239753 eV Core-core repulsion = 14557.767535 eV Total energy + Delta-G solvation = -3010.472218 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.72759 -39.44929 -37.71158 -36.28803 -33.93948 -33.04455 -31.88830 -29.18225 -27.89276 -26.44682 -23.97707 -23.19004 -21.72695 -20.23097 -18.52882 -18.02005 -17.21236 -16.92840 -16.46491 -15.73259 -15.19792 -14.57952 -14.20960 -13.81172 -13.58912 -13.37568 -13.33636 -12.86384 -12.56807 -12.17961 -12.07458 -11.70434 -11.28737 -10.70573 -10.62319 -10.32136 -10.14749 -9.74736 -9.47758 -9.04375 -9.03153 -8.65575 -8.48205 -6.51737 -4.23129 0.56566 1.12654 2.48859 2.81261 3.40948 3.42989 3.43773 3.57528 3.60088 3.92421 4.17534 4.46842 4.57575 4.77577 4.96601 4.98891 5.18623 5.23413 5.25014 5.38705 5.40673 5.56734 6.22073 6.39084 6.69568 6.93250 6.99292 7.14322 7.45747 7.83163 7.98983 8.25434 8.40917 8.67694 9.44837 10.89040 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.032532 B = 0.005636 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.487622 B = 4966.747544 C = 5313.626869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.624 5.624 3 C 0.156 3.844 4 C 0.198 3.802 5 N -0.507 5.507 6 C 0.425 3.575 7 C 0.064 3.936 8 C -0.590 4.590 9 H 0.050 0.950 10 C 0.025 3.975 11 N -0.904 5.904 12 Si 1.077 2.923 13 H -0.285 1.285 14 H -0.281 1.281 15 H -0.288 1.288 16 N -0.536 5.536 17 C 0.433 3.567 18 O -0.466 6.466 19 C -0.328 4.328 20 C 0.578 3.422 21 O -0.520 6.520 22 H 0.060 0.940 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.270 0.730 30 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.219 -2.388 -3.672 16.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.359 5.359 3 C 0.032 3.968 4 C 0.047 3.953 5 N -0.223 5.223 6 C 0.163 3.837 7 C 0.025 3.975 8 C -0.629 4.629 9 H 0.068 0.932 10 C -0.180 4.180 11 N -0.539 5.539 12 Si 0.904 3.096 13 H -0.212 1.212 14 H -0.207 1.207 15 H -0.214 1.214 16 N -0.260 5.260 17 C 0.244 3.756 18 O -0.274 6.274 19 C -0.338 4.338 20 C 0.367 3.633 21 O -0.397 6.397 22 H 0.078 0.922 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -14.494 -1.897 -2.181 14.779 hybrid contribution -2.046 -1.293 -1.318 2.756 sum -16.540 -3.190 -3.499 17.204 Atomic orbital electron populations 1.21523 0.75673 1.03629 1.02243 1.47796 1.06492 1.06558 1.75103 1.20298 0.83378 0.87959 1.05165 1.21824 0.94720 0.90298 0.88430 1.67583 0.96619 1.41274 1.16800 1.24322 0.95023 0.84075 0.80250 1.18539 0.83868 0.94774 1.00273 1.21643 1.08480 1.43185 0.89640 0.93158 1.25878 0.92791 0.93083 1.06243 1.70766 1.39237 1.43660 1.00262 0.83421 0.75787 0.77002 0.73347 1.21182 1.20682 1.21434 1.68225 1.28346 1.11233 1.18215 1.19242 0.85909 0.84725 0.85717 1.84623 1.95447 1.13386 1.33929 1.21903 0.95893 0.97913 1.18120 1.17611 0.85151 0.84597 0.75946 1.90773 1.79346 1.19541 1.50046 0.92157 0.90205 0.90416 0.87022 0.87098 0.93389 0.93491 0.91915 0.73103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.86 11.09 59.85 0.66 1.53 16 2 N -0.62 -7.47 3.37 -184.28 -0.62 -8.09 16 3 C 0.16 1.74 7.38 -5.04 -0.04 1.70 16 4 C 0.20 3.31 7.62 -82.12 -0.63 2.68 16 5 N -0.51 -10.27 10.32 -6.79 -0.07 -10.34 16 6 C 0.42 9.60 6.83 -156.93 -1.07 8.53 16 7 C 0.06 1.61 4.71 -29.04 -0.14 1.47 16 8 C -0.59 -16.52 9.09 -34.44 -0.31 -16.83 16 9 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 10 C 0.02 0.69 5.46 -17.82 -0.10 0.60 16 11 N -0.90 -26.43 13.65 55.43 0.76 -25.67 16 12 Si 1.08 24.92 29.90 -169.99 -5.08 19.84 16 13 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 16 N -0.54 -11.70 10.33 -10.45 -0.11 -11.80 16 17 C 0.43 8.27 7.89 -16.22 -0.13 8.14 16 18 O -0.47 -7.78 13.57 -17.53 -0.24 -8.01 16 19 C -0.33 -5.76 6.29 -104.97 -0.66 -6.42 16 20 C 0.58 9.34 7.95 -12.87 -0.10 9.24 16 21 O -0.52 -9.65 17.72 5.28 0.09 -9.56 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.08 0.68 8.01 -51.93 -0.42 0.27 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 1.21 8.00 -51.93 -0.42 0.80 16 28 H 0.05 1.21 8.01 -51.93 -0.42 0.79 16 29 H 0.27 7.76 7.22 -40.82 -0.29 7.47 16 30 H 0.41 4.50 9.06 45.56 0.41 4.92 16 LS Contribution 275.13 15.07 4.15 4.15 Total: -1.00 -34.87 275.13 -5.66 -40.53 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -2.02 Total: -1.66 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: -2.51 Total: 10.63 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.04 Total: -55.91 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.14 Total: -17.58 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.87 -5.66 -40.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259908089.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.564 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds