Wall clock time and date at job start Mon Mar 30 2020 03:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30415 * 125.48196 * 2 1 4 4 C 1.34040 * 108.91988 * 179.72874 * 3 2 1 5 5 C 1.35804 * 107.50964 * 0.42949 * 4 3 2 6 6 C 1.47770 * 126.59413 * 179.84331 * 5 4 3 7 7 N 1.31017 * 126.44181 * 359.39275 * 6 5 4 8 8 O 1.21291 * 110.04947 * 180.26264 * 7 6 5 9 9 C 1.33694 * 110.07354 * 0.02562 * 8 7 6 10 10 C 1.50694 * 126.39978 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47135 * 269.96807 * 10 9 8 12 12 C 1.50690 * 109.47518 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00325 * 359.97438 * 12 11 10 14 14 C 1.37885 * 120.00146 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99639 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99926 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47010 * 60.00522 * 16 14 12 18 18 H 1.48504 * 109.46905 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47178 * 300.00082 * 16 14 12 20 20 N 1.30920 * 107.19111 * 359.97438 * 9 8 7 21 21 O 1.33905 * 125.47679 * 179.97438 * 2 1 3 22 22 H 1.08998 * 109.47471 * 270.00142 * 1 2 3 23 23 H 1.08997 * 109.47271 * 30.00578 * 1 2 3 24 24 H 1.09001 * 109.47345 * 150.00588 * 1 2 3 25 25 H 1.08002 * 126.24776 * 180.27141 * 4 3 2 26 26 H 1.08992 * 109.47845 * 29.96630 * 10 9 8 27 27 H 1.08998 * 109.47035 * 149.97302 * 10 9 8 28 28 H 1.09006 * 109.46823 * 300.00648 * 11 10 9 29 29 H 1.09003 * 109.47194 * 60.00168 * 11 10 9 30 30 H 0.97002 * 119.99698 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2639 1.0620 0.0000 4 6 3.5487 0.6799 0.0060 5 6 3.5712 -0.6779 0.0001 6 6 4.7720 -1.5391 0.0002 7 7 6.0187 -1.1361 -0.0051 8 8 6.7648 -2.0924 -0.0085 9 6 6.0570 -3.2267 -0.0061 10 6 6.6126 -4.6274 -0.0084 11 6 6.7947 -5.1015 -1.4516 12 6 7.3497 -6.5025 -1.4540 13 1 7.5528 -7.0046 -0.5195 14 6 7.5984 -7.1436 -2.6491 15 7 7.3516 -6.5321 -3.7870 16 14 8.2870 -8.8800 -2.6520 17 1 7.3456 -9.7870 -1.9475 18 1 8.4625 -9.3406 -4.0529 19 1 9.5999 -8.8930 -1.9580 20 7 4.7911 -2.8928 -0.0004 21 8 2.2841 -1.0905 0.0005 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3634 -0.8900 -0.5137 25 1 4.4090 1.3327 0.0117 26 1 7.5759 -4.6371 0.5014 27 1 5.9214 -5.2933 0.5082 28 1 5.8313 -5.0918 -1.9615 29 1 7.4859 -4.4357 -1.9684 30 1 7.5269 -6.9830 -4.6278 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259979326.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:19 Heat of formation + Delta-G solvation = 57.245666 kcal Electronic energy + Delta-G solvation = -16863.827459 eV Core-core repulsion = 13856.226370 eV Total energy + Delta-G solvation = -3007.601089 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.76105 -44.60329 -37.32403 -36.34315 -36.14574 -34.61032 -33.17518 -31.97425 -29.18605 -27.78277 -25.44309 -24.91942 -23.57911 -22.62187 -22.07860 -19.47769 -19.22492 -18.47530 -18.02247 -17.82721 -16.75942 -16.50107 -15.86049 -15.14218 -14.98386 -14.51051 -14.29922 -14.07519 -13.82744 -13.50086 -13.37957 -13.19443 -12.78356 -12.67479 -12.59408 -12.37865 -12.03979 -12.01829 -11.93061 -11.38155 -11.17935 -10.55395 -9.86586 -8.19981 -6.32116 -0.61386 0.18939 0.96878 1.08121 1.47116 1.49954 1.54318 1.57424 1.65176 2.34220 2.45769 2.82765 3.06005 3.15809 3.62780 3.72072 4.19792 4.28313 4.35900 4.49075 4.50923 4.60780 4.63886 4.77096 4.84904 4.91182 5.17746 5.43237 5.51464 5.77536 6.12640 6.34535 6.83571 6.84240 7.38301 8.92267 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.039363 B = 0.004010 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.152741 B = 6980.173688 C = 7363.810587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.224 3.776 3 N -0.505 5.505 4 C 0.041 3.959 5 C -0.014 4.014 6 C 0.235 3.765 7 N -0.371 5.371 8 O 0.084 5.916 9 C 0.226 3.774 10 C -0.015 4.015 11 C 0.031 3.969 12 C -0.539 4.539 13 H 0.081 0.919 14 C 0.000 4.000 15 N -0.936 5.936 16 Si 0.970 3.030 17 H -0.265 1.265 18 H -0.290 1.290 19 H -0.262 1.262 20 N -0.505 5.505 21 O -0.197 6.197 22 H 0.122 0.878 23 H 0.124 0.876 24 H 0.107 0.893 25 H 0.213 0.787 26 H 0.126 0.874 27 H 0.117 0.883 28 H -0.008 1.008 29 H 0.002 0.998 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.049 10.900 9.387 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.018 3.982 3 N -0.234 5.234 4 C -0.102 4.102 5 C -0.068 4.068 6 C -0.034 4.034 7 N -0.081 5.081 8 O 0.024 5.976 9 C 0.007 3.993 10 C -0.054 4.054 11 C -0.007 4.007 12 C -0.577 4.577 13 H 0.099 0.901 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.794 3.206 17 H -0.190 1.190 18 H -0.216 1.216 19 H -0.186 1.186 20 N -0.238 5.238 21 O -0.083 6.083 22 H 0.140 0.860 23 H 0.142 0.858 24 H 0.126 0.874 25 H 0.229 0.771 26 H 0.144 0.856 27 H 0.135 0.865 28 H 0.010 0.990 29 H 0.020 0.980 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.531 12.194 9.215 18.561 hybrid contribution 0.865 -1.571 -0.592 1.889 sum -9.666 10.623 8.623 16.752 Atomic orbital electron populations 1.20772 0.76656 1.07218 1.07063 1.27829 0.98393 0.77255 0.94694 1.70540 1.01477 1.30364 1.21007 1.23712 0.96295 0.90921 0.99273 1.18987 0.80378 0.91890 1.15592 1.22252 0.90553 0.87635 1.02992 1.74880 1.01011 1.10104 1.22058 1.85288 1.34769 1.11871 1.65670 1.29582 0.84800 0.93847 0.91038 1.20660 1.03252 0.80245 1.01214 1.18978 0.95684 0.96179 0.89850 1.21539 1.42927 0.99712 0.93521 0.90120 1.26003 0.95832 1.02809 0.95160 1.70110 1.49493 1.39767 0.98188 0.85421 0.79391 0.78810 0.76955 1.19001 1.21628 1.18625 1.72186 1.19442 1.09633 1.22557 1.84490 1.15339 1.38520 1.69989 0.86010 0.85754 0.87397 0.77081 0.85606 0.86493 0.98980 0.98000 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.51 71.23 0.75 0.13 16 2 C 0.22 5.11 8.32 88.32 0.74 5.85 16 3 N -0.50 -13.00 11.27 -302.97 -3.41 -16.41 16 4 C 0.04 1.14 11.84 83.79 0.99 2.13 16 5 C -0.01 -0.47 7.32 24.23 0.18 -0.29 16 6 C 0.24 8.69 8.07 136.98 1.11 9.80 16 7 N -0.37 -13.28 12.20 -58.80 -0.72 -14.00 16 8 O 0.08 3.02 11.29 74.38 0.84 3.86 16 9 C 0.23 8.45 7.74 88.35 0.68 9.13 16 10 C -0.02 -0.55 5.78 29.85 0.17 -0.37 16 11 C 0.03 1.55 4.95 29.85 0.15 1.69 16 12 C -0.54 -28.10 9.11 25.60 0.23 -27.87 16 13 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 14 C 0.00 0.00 5.46 84.66 0.46 0.47 16 15 N -0.94 -55.49 13.29 21.45 0.28 -55.21 16 16 Si 0.97 41.96 29.54 68.60 2.03 43.98 16 17 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 18 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 20 N -0.50 -20.11 11.58 -302.30 -3.50 -23.61 16 21 O -0.20 -5.98 10.79 -7.35 -0.08 -6.06 16 22 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.21 4.77 8.06 -2.91 -0.02 4.75 16 26 H 0.13 3.81 8.14 -2.39 -0.02 3.79 16 27 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 28 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 29 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -68.73 281.49 2.07 -66.67 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: 1.17 Total: 0.12 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 5.46 Total: 0.67 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -7.35 Total: -109.23 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: 0.76 Total: -2.21 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -68.73 2.07 -66.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259979326.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.913 kcal (2) G-P(sol) polarization free energy of solvation -68.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds