Wall clock time and date at job start Mon Mar 30 2020 04:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36906 * 125.00068 * 2 1 4 4 C 1.50699 * 125.03720 * 359.97438 * 3 2 1 5 5 H 1.08998 * 109.47233 * 24.72924 * 4 3 2 6 6 N 1.46904 * 109.46967 * 144.72102 * 4 3 2 7 7 C 1.50696 * 109.47232 * 264.72131 * 4 3 2 8 8 H 1.07998 * 120.00115 * 354.84817 * 7 4 3 9 9 C 1.37876 * 119.99925 * 174.84121 * 7 4 3 10 10 N 1.31516 * 120.00241 * 164.32621 * 9 7 4 11 11 Si 1.86804 * 119.99944 * 344.32196 * 9 7 4 12 12 H 1.48506 * 109.47072 * 180.02562 * 11 9 7 13 13 H 1.48492 * 109.47583 * 299.99982 * 11 9 7 14 14 H 1.48499 * 109.46904 * 60.00381 * 11 9 7 15 15 C 1.34223 * 109.91846 * 179.73455 * 3 2 1 16 16 C 1.46390 * 106.88475 * 0.26217 * 15 3 2 17 17 C 1.39715 * 134.29410 * 180.02562 * 16 15 3 18 18 C 1.38372 * 118.02352 * 180.02562 * 17 16 15 19 19 F 1.35100 * 120.31533 * 180.02562 * 18 17 16 20 20 C 1.38865 * 119.36140 * 359.94023 * 18 17 16 21 21 N 1.31584 * 121.54697 * 0.03080 * 20 18 17 22 22 C 1.32630 * 121.70557 * 0.02562 * 21 20 18 23 23 H 1.08991 * 109.47574 * 89.99610 * 1 2 3 24 24 H 1.09000 * 109.47072 * 210.00303 * 1 2 3 25 25 H 1.09002 * 109.47003 * 329.99837 * 1 2 3 26 26 H 1.00904 * 110.99471 * 54.17055 * 6 4 3 27 27 H 1.00901 * 110.99943 * 178.11940 * 6 4 3 28 28 H 0.97003 * 119.99739 * 354.86202 * 10 9 7 29 29 H 1.08004 * 126.56232 * 180.28155 * 15 3 2 30 30 H 1.07998 * 120.98550 * 359.93901 * 17 16 15 31 31 H 1.07999 * 119.22215 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2502 1.1215 0.0000 4 6 1.7358 2.5379 -0.0006 5 1 0.7342 2.5609 0.4290 6 7 2.6310 3.3843 0.7995 7 6 1.6876 3.0543 -1.4154 8 1 2.0758 2.4522 -2.2236 9 6 1.1479 4.2955 -1.6783 10 7 1.3750 4.8800 -2.8344 11 14 0.0941 5.1471 -0.3923 12 1 -0.3625 6.4595 -0.9164 13 1 -1.0861 4.3016 -0.0804 14 1 0.8926 5.3572 0.8420 15 6 3.5462 0.7722 0.0058 16 6 3.5923 -0.6910 0.0035 17 6 4.6225 -1.6347 0.0074 18 6 4.2768 -2.9745 0.0026 19 9 5.2357 -3.9262 0.0066 20 6 2.9349 -3.3315 -0.0046 21 7 1.9813 -2.4247 -0.0075 22 6 2.2537 -1.1267 -0.0043 23 1 -0.3634 0.0001 -1.0275 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 3.5847 3.3057 0.4794 27 1 2.3244 4.3456 0.7896 28 1 1.9817 4.4731 -3.4726 29 1 4.3931 1.4424 0.0115 30 1 5.6579 -1.3276 0.0126 31 1 2.6676 -4.3778 -0.0079 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260024366.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:22 Heat of formation + Delta-G solvation = 27.911320 kcal Electronic energy + Delta-G solvation = -17658.881713 eV Core-core repulsion = 14662.381382 eV Total energy + Delta-G solvation = -2996.500332 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.097 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.69995 -41.28687 -37.83480 -34.85776 -33.13664 -31.94251 -30.69986 -28.72923 -26.34404 -25.88135 -23.68195 -22.08756 -21.46275 -19.13324 -17.89673 -17.47970 -17.27285 -16.20777 -15.71660 -15.58363 -15.01813 -14.23742 -13.97917 -13.68657 -13.21386 -13.13042 -12.97713 -12.89501 -12.47255 -12.35698 -12.28902 -11.89479 -11.21777 -11.03115 -10.42779 -10.24002 -10.01733 -9.52198 -9.32308 -8.71404 -8.02510 -7.76169 -7.50008 -6.67519 -4.45394 1.13731 1.39495 2.84818 3.14498 3.19623 3.22696 3.39355 3.95461 4.20896 4.27015 4.55137 4.85359 4.96119 5.00556 5.06308 5.43295 5.50300 5.56528 5.75478 5.81522 5.88922 5.98497 6.15048 6.36198 6.48898 6.71324 7.02859 7.30995 7.53079 7.55955 7.99323 8.08854 8.15969 8.29548 8.61504 9.27295 10.61716 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.040261 B = 0.005873 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.287913 B = 4766.464215 C = 5009.815981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.464 5.464 3 C 0.174 3.826 4 C 0.235 3.765 5 H 0.048 0.952 6 N -0.852 5.852 7 C -0.632 4.632 8 H 0.061 0.939 9 C 0.037 3.963 10 N -0.889 5.889 11 Si 1.039 2.961 12 H -0.280 1.280 13 H -0.281 1.281 14 H -0.270 1.270 15 C -0.216 4.216 16 C -0.114 4.114 17 C -0.072 4.072 18 C 0.007 3.993 19 F -0.140 7.140 20 C 0.095 3.905 21 N -0.469 5.469 22 C 0.268 3.732 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.331 0.669 27 H 0.338 0.662 28 H 0.272 0.728 29 H 0.149 0.851 30 H 0.142 0.858 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.843 -9.842 6.570 11.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.150 5.150 3 C 0.065 3.935 4 C 0.125 3.875 5 H 0.065 0.935 6 N -0.385 5.385 7 C -0.672 4.672 8 H 0.079 0.921 9 C -0.170 4.170 10 N -0.521 5.521 11 Si 0.867 3.133 12 H -0.206 1.206 13 H -0.207 1.207 14 H -0.196 1.196 15 C -0.239 4.239 16 C -0.122 4.122 17 C -0.099 4.099 18 C -0.017 4.017 19 F -0.119 7.119 20 C -0.072 4.072 21 N -0.181 5.181 22 C 0.035 3.965 23 H 0.090 0.910 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.143 0.857 27 H 0.154 0.846 28 H 0.083 0.917 29 H 0.166 0.834 30 H 0.160 0.840 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.559 -9.129 7.441 11.791 hybrid contribution 2.096 -0.913 -1.423 2.693 sum 1.537 -10.042 6.019 11.808 Atomic orbital electron populations 1.21942 0.76750 1.03790 1.03507 1.43647 1.06408 1.02703 1.62234 1.20837 0.89519 0.88519 0.94592 1.17975 0.92516 0.83053 0.93960 0.93464 1.59682 1.06384 1.13375 1.59049 1.22521 1.47316 1.04845 0.92484 0.92109 1.25840 0.96776 0.94362 1.00069 1.70821 1.33734 1.39319 1.08212 0.84069 0.76965 0.77050 0.75245 1.20583 1.20709 1.19610 1.21135 0.96076 0.90688 1.16047 1.19738 0.92137 0.95268 1.05097 1.20819 0.99941 0.90034 0.99111 1.18270 0.86892 0.86025 1.10469 1.91457 1.62757 1.63009 1.94676 1.22287 0.86278 0.98636 0.99983 1.66382 1.36787 0.99229 1.15680 1.18337 0.88362 0.86756 1.03059 0.90976 0.90143 0.89538 0.85748 0.84618 0.91731 0.83382 0.84048 0.81845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.85 59.85 0.65 1.95 16 2 N -0.46 -8.95 3.17 -119.03 -0.38 -9.33 16 3 C 0.17 3.59 5.84 -81.74 -0.48 3.12 16 4 C 0.24 5.14 2.47 -70.02 -0.17 4.97 16 5 H 0.05 1.03 5.48 -51.93 -0.28 0.74 16 6 N -0.85 -17.21 9.14 -6.65 -0.06 -17.27 16 7 C -0.63 -16.18 9.05 -34.44 -0.31 -16.50 16 8 H 0.06 1.75 7.99 -52.49 -0.42 1.33 16 9 C 0.04 0.98 5.38 -17.82 -0.10 0.88 16 10 N -0.89 -25.27 13.70 55.43 0.76 -24.51 16 11 Si 1.04 22.42 26.42 -169.99 -4.49 17.93 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 14 H -0.27 -5.26 5.69 56.52 0.32 -4.94 16 15 C -0.22 -4.19 10.29 -37.72 -0.39 -4.58 16 16 C -0.11 -2.11 6.39 -105.11 -0.67 -2.78 16 17 C -0.07 -1.14 10.21 -38.98 -0.40 -1.53 16 18 C 0.01 0.10 7.33 -39.30 -0.29 -0.19 16 19 F -0.14 -1.95 17.28 2.25 0.04 -1.92 16 20 C 0.10 1.40 11.13 -17.43 -0.19 1.21 16 21 N -0.47 -8.14 10.38 -12.20 -0.13 -8.27 16 22 C 0.27 5.09 7.90 -155.61 -1.23 3.86 16 23 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.09 1.31 6.80 -51.93 -0.35 0.96 16 26 H 0.33 6.37 7.70 -39.29 -0.30 6.07 16 27 H 0.34 6.87 5.50 -39.29 -0.22 6.66 16 28 H 0.27 7.81 8.73 -40.82 -0.36 7.46 16 29 H 0.15 2.64 7.26 -52.48 -0.38 2.26 16 30 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 31 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 268.70 15.07 4.05 4.05 Total: -1.00 -28.63 268.70 -6.67 -35.29 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -2.88 Total: 13.61 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -3.58 Total: -9.58 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.19 Total: -59.38 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.49 Total: 17.93 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.63 -6.67 -35.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260024366.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.206 kcal (2) G-P(sol) polarization free energy of solvation -28.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds