Wall clock time and date at job start Mon Mar 30 2020 03:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00215 * 2 1 4 4 H 1.48505 * 109.47124 * 270.00316 * 3 2 1 5 5 H 1.48506 * 109.47048 * 29.99789 * 3 2 1 6 6 H 1.48492 * 109.47285 * 149.99976 * 3 2 1 7 7 C 1.37879 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00459 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99605 * 0.02562 * 7 2 1 10 10 C 1.53503 * 114.20637 * 180.02562 * 9 7 2 11 11 N 1.47068 * 87.98455 * 220.14989 * 10 9 7 12 12 C 1.34774 * 136.05502 * 207.09126 * 11 10 9 13 13 O 1.21565 * 119.99959 * 5.59887 * 12 11 10 14 14 C 1.47720 * 119.99963 * 185.60754 * 12 11 10 15 15 C 1.39651 * 120.11931 * 6.45097 * 14 12 11 16 16 C 1.37833 * 119.88278 * 180.27375 * 15 14 12 17 17 C 1.38661 * 120.11683 * 0.02562 * 16 15 14 18 18 F 1.35101 * 119.87772 * 180.02562 * 17 16 15 19 19 C 1.38649 * 120.23868 * 359.97438 * 17 16 15 20 20 C 1.37832 * 120.12217 * 0.02562 * 19 17 16 21 21 C 1.47067 * 87.88621 * 27.33791 * 11 10 9 22 22 H 0.97006 * 119.99626 * 0.02562 * 1 2 3 23 23 H 1.08996 * 113.28438 * 313.06665 * 9 7 2 24 24 H 1.08989 * 113.46914 * 105.36434 * 10 9 7 25 25 H 1.09003 * 113.51510 * 334.93106 * 10 9 7 26 26 H 1.07998 * 120.05771 * 0.25060 * 15 14 12 27 27 H 1.07997 * 119.94616 * 179.97438 * 16 15 14 28 28 H 1.08004 * 119.94299 * 179.97438 * 19 17 16 29 29 H 1.07994 * 120.06649 * 180.02562 * 20 19 17 30 30 H 1.08998 * 113.46440 * 87.44288 * 21 11 10 31 31 H 1.09000 * 113.46792 * 217.87620 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.1488 -3.7443 0.0018 11 7 1.2080 -4.3598 -0.9464 12 6 0.8327 -5.6145 -1.2647 13 8 1.2525 -6.5563 -0.6208 14 6 -0.0884 -5.8452 -2.3962 15 6 -0.4657 -4.7830 -3.2206 16 6 -1.3299 -5.0028 -4.2716 17 6 -1.8250 -6.2757 -4.5107 18 9 -2.6714 -6.4858 -5.5426 19 6 -1.4537 -7.3339 -3.6954 20 6 -0.5901 -7.1253 -2.6416 21 6 0.8615 -3.0039 -1.3986 22 1 -0.4850 0.8401 -0.0004 23 1 0.4432 -2.5302 0.7317 24 1 2.1870 -4.2508 0.9660 25 1 3.1378 -3.5677 -0.4210 26 1 -0.0813 -3.7910 -3.0347 27 1 -1.6227 -4.1820 -4.9095 28 1 -1.8426 -8.3234 -3.8858 29 1 -0.3012 -7.9502 -2.0074 30 1 1.5109 -2.6314 -2.1908 31 1 -0.1970 -2.8799 -1.6273 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260121861.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:59 Heat of formation + Delta-G solvation = -29.983818 kcal Electronic energy + Delta-G solvation = -17254.128029 eV Core-core repulsion = 14222.824424 eV Total energy + Delta-G solvation = -3031.303605 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.02613 -41.52737 -39.68283 -38.50905 -34.67174 -32.59466 -32.07293 -30.44698 -27.18976 -26.87460 -24.51239 -23.89201 -22.11916 -20.38512 -18.81989 -18.67067 -18.20525 -17.56432 -16.79391 -16.65227 -16.60115 -16.14883 -15.57870 -15.19670 -14.64577 -14.48973 -14.27015 -13.99411 -13.62236 -13.38653 -13.27699 -13.09959 -12.76692 -12.60193 -12.23602 -12.00481 -11.46458 -11.03733 -10.84200 -10.49550 -10.24088 -9.95431 -9.54898 -8.15780 -6.26820 -0.41126 0.14805 1.48997 1.52037 1.60705 1.66395 1.91166 2.47414 2.64695 3.07335 3.14251 3.41696 3.63862 3.82655 4.11549 4.15796 4.25965 4.36714 4.48817 4.64762 4.70311 4.79994 4.84250 4.89060 4.96742 5.06604 5.08180 5.27379 5.60165 5.71750 5.82003 6.22934 6.79705 6.82337 7.06182 7.43491 8.94123 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.029283 B = 0.005317 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.949325 B = 5264.936301 C = 6047.003708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.024 3.976 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.068 0.932 9 C 0.023 3.977 10 C 0.105 3.895 11 N -0.640 5.640 12 C 0.570 3.430 13 O -0.592 6.592 14 C -0.156 4.156 15 C -0.069 4.069 16 C -0.158 4.158 17 C 0.118 3.882 18 F -0.135 7.135 19 C -0.153 4.153 20 C -0.038 4.038 21 C 0.106 3.894 22 H 0.265 0.735 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.149 0.851 27 H 0.163 0.837 28 H 0.171 0.829 29 H 0.147 0.853 30 H 0.091 0.909 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 -8.278 -9.331 12.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.177 4.177 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.086 0.914 9 C 0.003 3.997 10 C -0.017 4.017 11 N -0.372 5.372 12 C 0.363 3.637 13 O -0.476 6.476 14 C -0.159 4.159 15 C -0.087 4.087 16 C -0.176 4.176 17 C 0.099 3.901 18 F -0.113 7.113 19 C -0.171 4.171 20 C -0.057 4.057 21 C -0.016 4.016 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.167 0.833 27 H 0.180 0.820 28 H 0.189 0.811 29 H 0.165 0.835 30 H 0.109 0.891 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.869 -8.854 -9.083 13.005 hybrid contribution 0.150 0.899 0.054 0.913 sum -2.719 -7.955 -9.029 12.337 Atomic orbital electron populations 1.70055 1.07414 1.27881 1.50245 1.25729 0.95509 1.02453 0.93985 0.85566 0.78683 0.79073 0.78400 1.19768 1.21478 1.19179 1.21195 0.93388 0.90295 1.51619 0.91355 1.20288 0.94625 0.91764 0.92985 1.23298 0.94543 0.91864 0.91950 1.49872 1.42252 1.04926 1.40102 1.18220 0.81169 0.80665 0.83668 1.90682 1.59899 1.42026 1.54959 1.19999 1.02034 0.96122 0.97710 1.21879 0.94676 0.99597 0.92590 1.21330 0.99527 0.96860 0.99886 1.18075 0.90995 0.94693 0.86383 1.91519 1.68157 1.95635 1.56024 1.21315 1.00150 1.00288 0.95396 1.21211 0.93043 0.95704 0.95738 1.23625 1.00239 0.76616 1.01160 0.92627 0.94274 0.92405 0.89179 0.83328 0.81962 0.81140 0.83499 0.89133 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.85 13.26 21.45 0.28 -48.57 16 2 C 0.02 1.19 5.46 84.66 0.46 1.65 16 3 Si 0.96 39.61 29.54 68.60 2.03 41.64 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.53 -25.77 8.83 25.60 0.23 -25.55 16 8 H 0.07 3.22 7.81 -2.91 -0.02 3.20 16 9 C 0.02 1.04 3.79 -11.12 -0.04 1.00 16 10 C 0.11 4.28 8.18 83.18 0.68 4.96 16 11 N -0.64 -25.46 3.67 -861.34 -3.16 -28.62 16 12 C 0.57 22.50 8.00 86.75 0.69 23.19 16 13 O -0.59 -26.45 17.14 -3.92 -0.07 -26.51 16 14 C -0.16 -4.95 5.87 -20.09 -0.12 -5.07 16 15 C -0.07 -1.94 9.14 22.52 0.21 -1.74 16 16 C -0.16 -3.67 10.01 22.28 0.22 -3.44 16 17 C 0.12 2.64 7.31 22.47 0.16 2.81 16 18 F -0.13 -2.94 17.26 44.97 0.78 -2.16 16 19 C -0.15 -3.23 10.01 22.27 0.22 -3.01 16 20 C -0.04 -1.00 9.59 22.52 0.22 -0.79 16 21 C 0.11 4.16 5.71 83.27 0.48 4.64 16 22 H 0.26 13.45 8.31 -92.70 -0.77 12.68 16 23 H 0.04 2.02 8.11 -2.39 -0.02 2.00 16 24 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.09 3.39 8.10 -2.39 -0.02 3.37 16 26 H 0.15 4.31 4.17 -2.91 -0.01 4.30 16 27 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 28 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 29 H 0.15 3.75 7.66 -2.91 -0.02 3.73 16 30 H 0.09 3.36 8.10 -2.39 -0.02 3.34 16 31 H 0.07 2.70 6.73 -2.39 -0.02 2.69 16 Total: -1.00 -58.52 277.33 4.42 -54.09 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.15 Total: 11.49 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 3.41 Total: -1.36 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -2.87 Total: -77.19 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.07 Total: -26.51 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -58.52 4.42 -54.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260121861.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.110 kcal (2) G-P(sol) polarization free energy of solvation -58.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds