Wall clock time and date at job start Mon Mar 30 2020 04:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37669 * 119.75526 * 2 1 4 4 C 1.39769 * 119.80298 * 179.97438 * 3 2 1 5 5 N 1.35764 * 133.35411 * 179.97438 * 4 3 2 6 6 C 1.31025 * 109.63363 * 180.02562 * 5 4 3 7 7 N 1.37829 * 125.08133 * 180.02562 * 6 5 4 8 8 C 1.36963 * 120.00020 * 359.97438 * 7 6 5 9 9 H 1.08002 * 120.00021 * 0.02562 * 8 7 6 10 10 C 1.38789 * 120.00040 * 179.97438 * 8 7 6 11 11 N 1.31567 * 119.99891 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 119.99942 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.47145 * 90.00254 * 12 10 8 14 14 H 1.48506 * 109.47253 * 209.99676 * 12 10 8 15 15 H 1.48497 * 109.47404 * 329.99505 * 12 10 8 16 16 N 1.36715 * 109.83670 * 0.02562 * 6 5 4 17 17 C 1.46501 * 126.37961 * 180.02562 * 16 6 5 18 18 C 1.38400 * 107.23300 * 359.97438 * 16 6 5 19 19 C 1.38650 * 133.87608 * 179.97438 * 18 16 6 20 20 C 1.38178 * 119.83603 * 179.78852 * 19 18 16 21 21 F 1.35089 * 119.80258 * 180.26297 * 20 19 18 22 22 H 1.09002 * 109.47152 * 89.99826 * 1 2 3 23 23 H 1.09001 * 109.46980 * 329.99927 * 1 2 3 24 24 H 1.09004 * 109.47113 * 209.99907 * 1 2 3 25 25 H 1.08002 * 120.09739 * 359.97438 * 3 2 1 26 26 H 0.96996 * 120.00350 * 180.02562 * 7 6 5 27 27 H 0.97000 * 119.99728 * 180.02562 * 11 10 8 28 28 H 1.09005 * 109.47245 * 269.97706 * 17 16 6 29 29 H 1.08999 * 109.47421 * 29.97864 * 17 16 6 30 30 H 1.08996 * 109.47011 * 149.97651 * 17 16 6 31 31 H 1.07999 * 120.08562 * 0.02991 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1903 1.1952 0.0000 4 6 3.5880 1.1963 0.0005 5 7 4.5192 2.1843 0.0002 6 6 5.7192 1.6582 0.0005 7 7 6.8975 2.3731 0.0008 8 6 6.8678 3.7424 0.0004 9 1 5.9209 4.2620 0.0002 10 6 8.0543 4.4624 0.0012 11 7 8.0257 5.7777 0.0013 12 14 9.6920 3.5638 0.0023 13 1 10.1269 3.3258 -1.3975 14 1 10.7088 4.3886 0.7030 15 1 9.5423 2.2627 0.7022 16 7 5.6277 0.2941 0.0004 17 6 6.7464 -0.6518 0.0012 18 6 4.2814 -0.0265 0.0007 19 6 3.5781 -1.2214 0.0003 20 6 2.1964 -1.2059 0.0051 21 9 1.5119 -2.3706 0.0101 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5139 24 1 -0.3633 -0.8900 0.5138 25 1 1.6479 2.1291 -0.0004 26 1 7.7479 1.9066 0.0006 27 1 8.8550 6.2809 0.0015 28 1 7.0243 -0.8867 -1.0263 29 1 7.5983 -0.2067 0.5153 30 1 6.4490 -1.5658 0.5151 31 1 4.1089 -2.1620 0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260416508.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:40 Heat of formation + Delta-G solvation = 21.424641 kcal Electronic energy + Delta-G solvation = -17468.513337 eV Core-core repulsion = 14471.731721 eV Total energy + Delta-G solvation = -2996.781615 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.097 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.71947 -42.84457 -38.69304 -36.84560 -34.94266 -33.95201 -32.66722 -29.89881 -28.20449 -27.44713 -25.89407 -23.42791 -22.45501 -21.25060 -20.41825 -18.59906 -18.53704 -17.08816 -16.96604 -16.78913 -16.30606 -16.21932 -15.85432 -15.08257 -14.86605 -14.30543 -14.25522 -14.03496 -13.95655 -13.64245 -13.45059 -13.30107 -12.80298 -12.60184 -12.45853 -12.19046 -12.00025 -11.35946 -11.20116 -10.54200 -10.44673 -9.05875 -8.53967 -8.39951 -5.87532 0.04601 0.46627 1.24339 1.32852 1.36118 1.50013 1.94401 2.19610 2.76146 2.83778 3.13531 3.37122 3.56006 3.85136 3.92320 4.19836 4.34444 4.37144 4.45493 4.57312 4.69414 4.87914 4.93561 4.96292 5.19000 5.28749 5.36177 5.46332 5.65696 5.81479 6.02640 6.30640 6.59783 6.90230 7.21818 7.61815 8.76398 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.041334 B = 0.005626 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.239173 B = 4975.649520 C = 5632.437311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.110 4.110 3 C -0.088 4.088 4 C 0.063 3.937 5 N -0.605 5.605 6 C 0.522 3.478 7 N -0.565 5.565 8 C -0.296 4.296 9 H 0.076 0.924 10 C -0.014 4.014 11 N -0.932 5.932 12 Si 0.954 3.046 13 H -0.259 1.259 14 H -0.273 1.273 15 H -0.240 1.240 16 N -0.527 5.527 17 C 0.072 3.928 18 C 0.038 3.962 19 C -0.124 4.124 20 C 0.068 3.932 21 F -0.138 7.138 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.135 0.865 26 H 0.397 0.603 27 H 0.279 0.721 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 -16.938 0.053 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.114 4.114 3 C -0.110 4.110 4 C -0.058 4.058 5 N -0.340 5.340 6 C 0.169 3.831 7 N -0.193 5.193 8 C -0.426 4.426 9 H 0.094 0.906 10 C -0.214 4.214 11 N -0.572 5.572 12 Si 0.775 3.225 13 H -0.183 1.183 14 H -0.198 1.198 15 H -0.164 1.164 16 N -0.229 5.229 17 C -0.068 4.068 18 C -0.070 4.070 19 C -0.146 4.146 20 C 0.046 3.954 21 F -0.117 7.117 22 H 0.100 0.900 23 H 0.099 0.901 24 H 0.094 0.906 25 H 0.153 0.847 26 H 0.235 0.765 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.768 -15.825 0.057 16.527 hybrid contribution 1.359 -0.661 0.002 1.512 sum -3.409 -16.486 0.059 16.834 Atomic orbital electron populations 1.20710 0.87910 1.03893 1.03502 1.19729 0.98102 0.90275 1.03259 1.19946 0.89354 0.98278 1.03406 1.19491 0.94837 0.88841 1.02604 1.70758 0.96692 1.30016 1.36507 1.19558 0.88709 0.78947 0.95923 1.39562 1.01454 1.04927 1.73405 1.18969 0.95886 0.78840 1.48919 0.90616 1.25799 1.02165 0.96189 0.97198 1.69821 1.29737 1.06823 1.50856 0.85496 0.77887 0.79325 0.79748 1.18313 1.19803 1.16352 1.44938 1.05793 1.04599 1.67555 1.22209 0.87070 0.93022 1.04548 1.18281 0.83457 0.95991 1.09277 1.19642 0.91984 0.95981 1.07004 1.16786 0.88705 0.81073 1.08787 1.91427 1.79487 1.46228 1.94563 0.89954 0.90069 0.90592 0.84695 0.76481 0.91151 0.89607 0.89668 0.87169 0.82868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.17 9.82 71.24 0.70 -1.47 16 2 C -0.11 -3.19 5.88 -19.84 -0.12 -3.31 16 3 C -0.09 -3.10 9.73 22.51 0.22 -2.88 16 4 C 0.06 2.65 7.22 39.48 0.28 2.93 16 5 N -0.60 -30.31 10.51 -190.20 -2.00 -32.31 16 6 C 0.52 23.80 8.40 260.45 2.19 25.98 16 7 N -0.57 -26.26 5.20 -192.89 -1.00 -27.26 16 8 C -0.30 -16.57 10.27 84.02 0.86 -15.71 16 9 H 0.08 4.95 7.56 -2.91 -0.02 4.92 16 10 C -0.01 -0.78 5.50 84.86 0.47 -0.31 16 11 N -0.93 -54.55 13.96 21.64 0.30 -54.25 16 12 Si 0.95 37.78 27.73 68.60 1.90 39.68 16 13 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 14 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 15 H -0.24 -8.05 6.52 99.48 0.65 -7.40 16 16 N -0.53 -18.81 3.23 -541.23 -1.75 -20.56 16 17 C 0.07 1.65 10.96 127.77 1.40 3.06 16 18 C 0.04 1.37 6.87 38.78 0.27 1.63 16 19 C -0.12 -3.61 10.01 22.35 0.22 -3.38 16 20 C 0.07 1.96 7.23 22.42 0.16 2.12 16 21 F -0.14 -3.64 16.43 44.97 0.74 -2.90 16 22 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 24 H 0.08 1.44 7.61 -2.38 -0.02 1.42 16 25 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 26 H 0.40 15.61 4.92 -92.71 -0.46 15.15 16 27 H 0.28 15.01 8.31 -92.71 -0.77 14.23 16 28 H 0.09 1.65 8.14 -2.38 -0.02 1.64 16 29 H 0.08 1.80 7.45 -2.39 -0.02 1.79 16 30 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -69.16 274.17 5.50 -63.66 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.65 Total: 25.26 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 6.66 Total: 8.67 kcal Atomic # 7 Polarization: -129.93 SS G_CDS: -4.45 Total: -134.38 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.74 Total: -2.90 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 1.90 Total: 39.68 kcal Total: -69.16 5.50 -63.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416508.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.087 kcal (2) G-P(sol) polarization free energy of solvation -69.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds