Wall clock time and date at job start Mon Mar 30 2020 04:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36957 * 119.99746 * 2 1 4 4 H 1.08003 * 119.99882 * 162.20814 * 3 2 1 5 5 C 1.38803 * 120.00227 * 342.21320 * 3 2 1 6 6 N 1.31554 * 119.99820 * 344.85442 * 5 3 2 7 7 Si 1.86807 * 119.99900 * 164.84980 * 5 3 2 8 8 H 1.48497 * 109.47078 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46963 * 120.00197 * 7 5 3 10 10 H 1.48500 * 109.46937 * 240.00051 * 7 5 3 11 11 C 1.37834 * 120.00067 * 180.02562 * 2 1 3 12 12 N 1.31056 * 125.08569 * 187.19982 * 11 2 1 13 13 C 1.35698 * 109.65177 * 180.02562 * 12 11 2 14 14 C 1.39882 * 133.36693 * 180.02562 * 13 12 11 15 15 C 1.37615 * 119.81439 * 180.25363 * 14 13 12 16 16 C 1.38764 * 120.52889 * 359.48154 * 15 14 13 17 17 C 1.38133 * 120.42378 * 0.50257 * 16 15 14 18 18 F 1.35095 * 120.09012 * 179.73795 * 17 16 15 19 19 C 1.38878 * 119.81616 * 359.76113 * 17 16 15 20 20 N 1.36634 * 125.08588 * 7.22834 * 11 2 1 21 21 C 1.46499 * 126.39735 * 0.02562 * 20 11 2 22 22 H 1.08999 * 109.46824 * 203.83388 * 1 2 3 23 23 H 1.08997 * 109.47397 * 323.83424 * 1 2 3 24 24 H 1.09000 * 109.47000 * 83.83555 * 1 2 3 25 25 H 0.96998 * 119.99369 * 180.02562 * 6 5 3 26 26 H 1.07993 * 120.09251 * 359.97438 * 14 13 12 27 27 H 1.07993 * 119.73207 * 179.70092 * 15 14 13 28 28 H 1.08002 * 119.78335 * 180.23752 * 16 15 14 29 29 H 1.08998 * 109.47073 * 275.00687 * 21 20 11 30 30 H 1.09005 * 109.47246 * 35.00914 * 21 20 11 31 31 H 1.08999 * 109.47073 * 155.00880 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1861 0.0000 4 1 3.1910 1.2085 0.2858 5 6 1.5055 2.3595 -0.3672 6 7 0.3493 2.3070 -0.9926 7 14 2.2802 4.0130 0.0269 8 1 3.5713 3.8001 0.7289 9 1 2.5201 4.7602 -1.2339 10 1 1.3651 4.7932 0.8982 11 6 2.1542 -1.1937 -0.0005 12 7 3.4523 -1.3141 0.1338 13 6 3.7961 -2.6260 0.0874 14 6 5.0169 -3.3028 0.1781 15 6 5.0465 -4.6757 0.0879 16 6 3.8729 -5.3964 -0.0818 17 6 2.6586 -4.7443 -0.1729 18 9 1.5207 -5.4523 -0.3434 19 6 2.6108 -3.3589 -0.0894 20 7 1.5863 -2.4284 -0.1418 21 6 0.1603 -2.7144 -0.3172 22 1 -0.3633 -0.9400 0.4153 23 1 -0.3634 0.8296 0.6064 24 1 -0.3633 0.1104 -1.0217 25 1 -0.1007 3.1270 -1.2495 26 1 5.9342 -2.7492 0.3140 27 1 5.9903 -5.1965 0.1533 28 1 3.9097 -6.4738 -0.1472 29 1 -0.3234 -2.7622 0.6584 30 1 -0.2983 -1.9243 -0.9118 31 1 0.0416 -3.6695 -0.8288 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260437582.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:44 Heat of formation + Delta-G solvation = 49.184165 kcal Electronic energy + Delta-G solvation = -18013.984301 eV Core-core repulsion = 15018.406429 eV Total energy + Delta-G solvation = -2995.577872 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.097 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.82343 -42.76296 -38.82662 -37.10249 -35.00120 -33.67993 -30.96736 -29.80788 -28.57981 -27.71900 -25.88598 -23.25780 -22.74768 -21.51772 -19.36509 -18.33702 -18.05795 -17.66646 -17.22845 -16.64611 -16.30611 -16.21624 -15.90898 -15.29283 -14.84245 -14.66801 -14.39012 -14.13775 -13.97162 -13.36000 -12.93308 -12.66965 -12.60179 -12.51443 -12.37988 -12.13214 -11.95770 -11.21380 -11.03419 -10.62147 -10.24750 -8.92710 -8.58960 -8.29081 -5.82726 0.11439 0.61213 1.39180 1.40142 1.50871 1.64859 2.01999 2.29516 2.77870 2.92942 3.10406 3.36984 3.62109 3.78335 4.09716 4.20404 4.22722 4.38502 4.46636 4.55086 4.72302 4.85252 4.97108 5.12340 5.24731 5.41926 5.42352 5.57475 5.64093 5.80240 6.09348 6.30579 6.56352 7.07639 7.35942 7.69157 8.66821 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.035155 B = 0.006706 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.270961 B = 4174.131216 C = 4910.589424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.443 5.443 3 C -0.312 4.312 4 H 0.088 0.912 5 C -0.012 4.012 6 N -0.905 5.905 7 Si 0.997 3.003 8 H -0.269 1.269 9 H -0.277 1.277 10 H -0.269 1.269 11 C 0.512 3.488 12 N -0.609 5.609 13 C 0.093 3.907 14 C -0.126 4.126 15 C -0.077 4.077 16 C -0.167 4.167 17 C 0.098 3.902 18 F -0.149 7.149 19 C -0.033 4.033 20 N -0.530 5.530 21 C 0.074 3.926 22 H 0.069 0.931 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.272 0.728 26 H 0.135 0.865 27 H 0.175 0.825 28 H 0.168 0.832 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.451 -11.326 1.687 11.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.147 5.147 3 C -0.440 4.440 4 H 0.106 0.894 5 C -0.213 4.213 6 N -0.544 5.544 7 Si 0.821 3.179 8 H -0.194 1.194 9 H -0.203 1.203 10 H -0.194 1.194 11 C 0.161 3.839 12 N -0.344 5.344 13 C -0.029 4.029 14 C -0.147 4.147 15 C -0.097 4.097 16 C -0.188 4.188 17 C 0.075 3.925 18 F -0.128 7.128 19 C -0.141 4.141 20 N -0.232 5.232 21 C -0.067 4.067 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.153 0.847 27 H 0.193 0.807 28 H 0.185 0.815 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.469 -10.348 1.686 10.587 hybrid contribution -0.958 0.483 -0.177 1.088 sum 0.511 -9.864 1.510 9.992 Atomic orbital electron populations 1.21929 0.77901 1.00385 1.01642 1.41761 1.05064 0.99520 1.68387 1.19764 0.97291 0.82750 1.44205 0.89419 1.26082 0.97305 1.02599 0.95306 1.70177 1.17277 1.29720 1.37232 0.84798 0.78333 0.76709 0.78082 1.19375 1.20298 1.19441 1.20130 0.87015 0.81085 0.95678 1.70715 1.08691 1.17409 1.37608 1.19493 0.93933 0.88765 1.00696 1.20463 0.94404 0.94744 1.05123 1.20991 0.98958 0.91692 0.98068 1.21022 0.89242 1.01596 1.06917 1.16785 0.83647 0.84160 1.07933 1.91394 1.49596 1.78252 1.93554 1.18909 0.89994 0.90923 1.14230 1.44946 1.07718 1.03849 1.66712 1.22397 0.77204 1.03846 1.03264 0.91249 0.92354 0.93144 0.91808 0.84685 0.80725 0.81477 0.90129 0.89047 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.52 7.30 127.77 0.93 6.45 16 2 N -0.44 -23.05 3.10 -545.86 -1.69 -24.74 16 3 C -0.31 -17.30 9.51 84.03 0.80 -16.50 16 4 H 0.09 5.12 7.49 -2.91 -0.02 5.10 16 5 C -0.01 -0.62 5.08 84.87 0.43 -0.19 16 6 N -0.91 -47.39 10.52 21.65 0.23 -47.16 16 7 Si 1.00 41.95 29.58 68.60 2.03 43.98 16 8 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 9 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 11 C 0.51 25.85 8.15 260.47 2.12 27.97 16 12 N -0.61 -31.63 10.58 -190.28 -2.01 -33.65 16 13 C 0.09 4.09 7.22 39.49 0.29 4.38 16 14 C -0.13 -4.25 10.10 22.52 0.23 -4.02 16 15 C -0.08 -1.93 10.01 22.25 0.22 -1.71 16 16 C -0.17 -4.37 10.01 22.37 0.22 -4.14 16 17 C 0.10 3.29 7.31 22.40 0.16 3.45 16 18 F -0.15 -4.74 15.94 44.97 0.72 -4.03 16 19 C -0.03 -1.35 6.88 38.79 0.27 -1.09 16 20 N -0.53 -22.68 3.23 -541.08 -1.75 -24.43 16 21 C 0.07 2.42 9.07 127.77 1.16 3.58 16 22 H 0.07 2.56 4.41 -2.39 -0.01 2.55 16 23 H 0.06 2.73 7.11 -2.39 -0.02 2.71 16 24 H 0.05 2.34 7.12 -2.39 -0.02 2.32 16 25 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 26 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 27 H 0.18 2.73 8.06 -2.91 -0.02 2.70 16 28 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 29 H 0.08 2.32 7.56 -2.39 -0.02 2.30 16 30 H 0.09 2.98 5.55 -2.38 -0.01 2.97 16 31 H 0.09 2.70 6.95 -2.39 -0.02 2.69 16 Total: -1.00 -65.66 263.57 5.52 -60.15 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.17 Total: 11.69 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 6.83 Total: 18.19 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -5.23 Total: -129.98 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.72 Total: -4.03 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -65.66 5.52 -60.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260437582.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.331 kcal (2) G-P(sol) polarization free energy of solvation -65.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds