Wall clock time and date at job start Mon Mar 30 2020 03:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99952 * 2 1 4 4 C 1.50703 * 109.47168 * 293.95357 * 3 2 1 5 5 H 1.07998 * 119.99880 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99994 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99956 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 119.99773 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47537 * 0.02562 * 8 6 4 10 10 H 1.48511 * 109.46900 * 120.00337 * 8 6 4 11 11 H 1.48495 * 109.47477 * 240.00096 * 8 6 4 12 12 C 1.46895 * 110.99731 * 123.95228 * 2 1 3 13 13 C 1.53950 * 113.74252 * 74.22045 * 12 2 1 14 14 N 1.47588 * 86.11601 * 137.95271 * 13 12 2 15 15 S 1.65597 * 134.49059 * 155.36777 * 14 13 12 16 16 N 1.65604 * 107.21244 * 269.99320 * 15 14 13 17 17 O 1.42099 * 106.40550 * 23.53306 * 15 14 13 18 18 O 1.42098 * 106.40336 * 156.45872 * 15 14 13 19 19 C 1.47576 * 91.01297 * 335.35828 * 14 13 12 20 20 H 1.08995 * 109.47097 * 301.47351 * 1 2 3 21 21 H 1.08998 * 109.46905 * 61.47482 * 1 2 3 22 22 H 1.08996 * 109.47009 * 181.47155 * 1 2 3 23 23 H 1.08997 * 109.47430 * 53.95249 * 3 2 1 24 24 H 1.09004 * 109.46922 * 173.95339 * 3 2 1 25 25 H 0.96998 * 120.00001 * 179.97438 * 7 6 4 26 26 H 1.08997 * 113.02009 * 302.55774 * 12 2 1 27 27 H 1.08995 * 113.77190 * 252.25429 * 13 12 2 28 28 H 1.08998 * 113.76801 * 23.65262 * 13 12 2 29 29 H 0.97009 * 119.99858 * 150.00344 * 16 15 14 30 30 H 0.96997 * 120.00508 * 330.00044 * 16 15 14 31 31 H 1.08998 * 113.77461 * 270.33858 * 19 14 13 32 32 H 1.09002 * 113.77070 * 138.94341 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0277 3.3491 -1.5289 7 7 2.7137 4.0012 -0.6158 8 14 1.5839 4.1864 -3.1387 9 1 0.8156 3.2442 -3.9914 10 1 0.7569 5.3881 -2.8601 11 1 2.8257 4.5929 -3.8441 12 6 1.9954 -0.7659 1.1376 13 6 1.8597 -2.2907 0.9741 14 7 3.2250 -2.3707 1.5290 15 16 4.0845 -3.5357 2.3330 16 7 3.8108 -3.3172 3.9516 17 8 3.4911 -4.7805 1.9902 18 8 5.4578 -3.2431 2.1153 19 6 3.5165 -0.9957 1.0795 20 1 -0.3633 0.5365 0.8764 21 1 -0.3633 0.4908 -0.9029 22 1 -0.3633 -1.0273 0.0264 23 1 1.5611 1.9273 0.8309 24 1 3.0798 1.3443 0.1083 25 1 2.9889 4.9170 -0.7781 26 1 1.6441 -0.3949 2.1004 27 1 1.0983 -2.7353 1.6149 28 1 1.7875 -2.6166 -0.0635 29 1 3.8327 -4.0772 4.5541 30 1 3.6286 -2.4294 4.2972 31 1 3.9309 -0.9411 0.0728 32 1 4.0779 -0.4062 1.8043 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260548019.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:19 Heat of formation + Delta-G solvation = -35.384768 kcal Electronic energy + Delta-G solvation = -16667.330261 eV Core-core repulsion = 13791.156366 eV Total energy + Delta-G solvation = -2876.173894 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 249.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.27409 -37.09513 -35.80038 -35.26944 -33.24010 -32.42725 -28.02630 -27.40769 -25.86161 -24.36439 -21.73027 -19.79843 -19.07598 -18.05226 -17.51614 -16.59755 -16.26522 -15.68807 -15.61972 -14.69656 -13.99646 -13.79729 -13.40512 -13.04782 -12.36652 -12.28709 -12.21649 -12.08945 -11.98929 -11.94860 -11.59581 -11.16012 -10.97098 -10.67348 -10.63414 -10.47907 -10.39059 -9.81905 -9.29808 -9.02631 -8.48913 -7.41509 -6.07989 -4.09238 0.55687 2.91369 3.28615 3.36683 3.40962 3.57327 4.32693 4.38911 4.77668 4.81377 4.90429 5.28542 5.48569 5.56698 5.74257 5.83844 5.85333 5.97911 6.03373 6.21506 6.37751 6.58907 6.68015 6.98162 7.19272 7.23701 7.73575 7.98272 8.08316 8.45476 8.98576 9.55578 11.02973 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.045259 B = 0.004935 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.509485 B = 5672.771686 C = 5915.498251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.530 5.530 3 C 0.190 3.810 4 C -0.508 4.508 5 H 0.065 0.935 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.045 3.955 13 C 0.142 3.858 14 N -1.048 6.048 15 S 2.817 3.183 16 N -1.262 6.262 17 O -0.987 6.987 18 O -0.981 6.981 19 C 0.143 3.857 20 H 0.014 0.986 21 H 0.075 0.925 22 H 0.046 0.954 23 H -0.008 1.008 24 H 0.034 0.966 25 H 0.261 0.739 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.416 0.584 30 H 0.415 0.585 31 H 0.100 0.900 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 -11.362 8.551 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.256 5.256 3 C 0.065 3.935 4 C -0.547 4.547 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.066 4.066 13 C 0.017 3.983 14 N -0.892 5.892 15 S 2.823 3.177 16 N -0.935 5.935 17 O -0.970 6.970 18 O -0.964 6.964 19 C 0.018 3.982 20 H 0.032 0.968 21 H 0.094 0.906 22 H 0.064 0.936 23 H 0.010 0.990 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.245 0.755 30 H 0.241 0.759 31 H 0.118 0.882 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.365 -12.316 7.667 14.512 hybrid contribution -0.704 1.330 0.610 1.624 sum -1.069 -10.987 8.277 13.797 Atomic orbital electron populations 1.22181 0.88419 0.99216 1.01220 1.62389 1.07286 1.18250 1.37668 1.19769 0.95649 0.81218 0.96827 1.21181 1.34905 0.96911 1.01664 0.91725 1.24979 0.95241 0.97372 0.96983 1.69954 1.38295 1.11488 1.34065 0.86445 0.78168 0.79292 0.83516 1.19647 1.21174 1.21011 1.23713 0.95039 0.93297 0.94594 1.22819 0.80664 0.95527 0.99337 1.60058 1.28003 1.30546 1.70601 1.00776 0.72857 0.71538 0.72483 1.53634 1.92339 1.18316 1.29167 1.93601 1.78359 1.42100 1.82946 1.93633 1.33161 1.84573 1.85034 1.22835 0.96783 0.77665 1.00946 0.96770 0.90603 0.93555 0.98994 0.94832 0.92935 0.91704 0.90849 0.88704 0.75488 0.75876 0.88221 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 9.29 60.07 0.56 1.22 16 2 N -0.53 -10.19 4.70 -238.23 -1.12 -11.31 16 3 C 0.19 4.55 4.64 -4.98 -0.02 4.53 16 4 C -0.51 -13.51 8.53 -34.44 -0.29 -13.80 16 5 H 0.06 1.71 7.10 -52.49 -0.37 1.33 16 6 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -25.71 13.29 55.43 0.74 -24.98 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.05 0.70 3.35 -69.91 -0.23 0.46 16 13 C 0.14 1.86 8.20 -2.97 -0.02 1.84 16 14 N -1.05 -13.87 4.17 -118.89 -0.50 -14.37 16 15 S 2.82 36.19 7.24 -107.50 -0.78 35.41 16 16 N -1.26 -10.67 9.58 60.35 0.58 -10.09 16 17 O -0.99 -15.40 18.11 -57.17 -1.04 -16.44 16 18 O -0.98 -16.18 18.11 -57.17 -1.04 -17.22 16 19 C 0.14 2.14 7.68 -2.98 -0.02 2.11 16 20 H 0.01 0.24 8.13 -51.93 -0.42 -0.18 16 21 H 0.08 1.43 6.90 -51.93 -0.36 1.07 16 22 H 0.05 0.65 7.67 -51.93 -0.40 0.26 16 23 H -0.01 -0.20 8.11 -51.93 -0.42 -0.62 16 24 H 0.03 0.84 7.20 -51.93 -0.37 0.47 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.42 2.72 8.96 -34.48 -0.31 2.41 16 30 H 0.41 2.80 8.96 -34.48 -0.31 2.49 16 31 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 285.28 15.07 4.30 4.30 Total: -1.00 -33.46 285.28 -8.22 -41.68 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -4.21 Total: -0.73 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -0.14 Total: -2.22 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.30 Total: -60.74 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -2.07 Total: -33.65 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 36.19 SS G_CDS: -0.78 Total: 35.41 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.46 -8.22 -41.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260548019.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.299 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds