Wall clock time and date at job start Mon Mar 30 2020 04:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99781 * 2 1 4 4 H 1.48491 * 109.47124 * 270.00406 * 3 2 1 5 5 H 1.48505 * 109.46948 * 30.00612 * 3 2 1 6 6 H 1.48502 * 109.46682 * 150.00202 * 3 2 1 7 7 C 1.37881 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99786 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99899 * 179.97438 * 7 2 1 10 10 H 1.09000 * 110.27035 * 60.63988 * 9 7 2 11 11 C 1.54594 * 110.31094 * 298.54331 * 9 7 2 12 12 C 1.54937 * 102.92590 * 262.94501 * 11 9 7 13 13 N 1.48536 * 103.22396 * 322.58551 * 12 11 9 14 14 C 1.47902 * 105.82263 * 39.20678 * 13 12 11 15 15 H 1.09002 * 109.91604 * 94.01934 * 14 13 12 16 16 C 1.50698 * 109.92140 * 215.31584 * 14 13 12 17 17 C 1.38258 * 119.92245 * 38.27156 * 16 14 13 18 18 C 1.38244 * 120.14439 * 179.72404 * 17 16 14 19 19 C 1.38569 * 119.99666 * 0.55244 * 18 17 16 20 20 O 1.35990 * 120.06826 * 179.70382 * 19 18 17 21 21 C 1.39153 * 119.85634 * 359.72239 * 19 18 17 22 22 O 1.35987 * 120.07416 * 179.97438 * 21 19 18 23 23 C 1.38237 * 119.93097 * 218.54768 * 16 14 13 24 24 H 0.96998 * 120.00565 * 359.97438 * 1 2 3 25 25 H 1.08995 * 110.72211 * 144.57941 * 11 9 7 26 26 H 1.09010 * 110.87470 * 21.37764 * 11 9 7 27 27 H 1.08998 * 110.66665 * 204.15369 * 12 11 9 28 28 H 1.08998 * 110.66379 * 81.01935 * 12 11 9 29 29 H 1.00901 * 110.99803 * 159.71785 * 13 12 11 30 30 H 1.07999 * 119.92731 * 359.97438 * 17 16 14 31 31 H 1.07999 * 119.99879 * 180.27484 * 18 17 16 32 32 H 0.96702 * 114.00252 * 270.01201 * 20 19 18 33 33 H 0.96703 * 113.99880 * 270.02537 * 22 21 19 34 34 H 1.08001 * 119.99592 * 359.97400 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8895 -0.6929 0.8900 11 6 4.0477 -0.5009 -1.2748 12 6 4.3416 -1.6927 -2.2202 13 7 4.8652 -2.7349 -1.3005 14 6 4.0482 -2.6358 -0.0717 15 1 3.2170 -3.3393 -0.1206 16 6 4.9007 -2.9259 1.1366 17 6 6.2053 -2.4707 1.1856 18 6 6.9897 -2.7293 2.2942 19 6 6.4724 -3.4561 3.3545 20 8 7.2447 -3.7165 4.4432 21 6 5.1612 -3.9191 3.3028 22 8 4.6492 -4.6332 4.3407 23 6 4.3786 -3.6515 2.1911 24 1 -0.4851 0.8400 0.0004 25 1 4.9607 0.0531 -1.0571 26 1 3.2928 0.1566 -1.7061 27 1 5.0936 -1.4200 -2.9606 28 1 3.4271 -2.0327 -2.7062 29 1 4.7883 -3.6527 -1.7128 30 1 6.6112 -1.9083 0.3577 31 1 8.0070 -2.3687 2.3318 32 1 7.7472 -4.5403 4.3810 33 1 4.7807 -5.5882 4.2638 34 1 3.3605 -4.0094 2.1485 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260602958.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:44 Heat of formation + Delta-G solvation = -55.083504 kcal Electronic energy + Delta-G solvation = -18223.103579 eV Core-core repulsion = 15314.171875 eV Total energy + Delta-G solvation = -2908.931704 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.01698 -38.24764 -36.76122 -35.88064 -32.69430 -30.71821 -29.87263 -29.44653 -27.03793 -24.29747 -22.54805 -21.94402 -20.68173 -19.36408 -18.52303 -17.32148 -16.80459 -16.13161 -15.71711 -15.38018 -14.81885 -14.50087 -14.03559 -13.66568 -13.32544 -12.85373 -12.45383 -12.18155 -11.88926 -11.76124 -11.66105 -11.47944 -10.94368 -10.70331 -10.64141 -10.24740 -10.03402 -9.93048 -9.62250 -9.07872 -8.62777 -8.53325 -8.08236 -8.02661 -6.13681 -4.13736 1.44841 1.54573 3.23802 3.35947 3.39231 3.81369 4.28127 4.29518 4.36969 4.78379 5.13331 5.17856 5.42311 5.59157 5.67274 5.77613 5.85430 5.95783 5.99554 6.14733 6.22050 6.29076 6.51980 6.59344 6.67907 6.74782 6.89200 6.94423 7.05929 7.26346 7.34569 7.51726 7.71909 7.84468 7.95542 8.42483 8.87173 9.48008 10.98914 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024292 B = 0.007051 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.367750 B = 3970.146443 C = 4331.655771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.262 1.262 7 C -0.515 4.515 8 H 0.073 0.927 9 C 0.020 3.980 10 H 0.037 0.963 11 C -0.134 4.134 12 C 0.050 3.950 13 N -0.671 5.671 14 C 0.116 3.884 15 H 0.061 0.939 16 C -0.040 4.040 17 C -0.084 4.084 18 C -0.139 4.139 19 C 0.061 3.939 20 O -0.491 6.491 21 C 0.074 3.926 22 O -0.489 6.489 23 C -0.124 4.124 24 H 0.265 0.735 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.328 0.672 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.378 0.622 33 H 0.380 0.620 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.150 -8.587 0.952 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.187 1.187 7 C -0.553 4.553 8 H 0.091 0.909 9 C 0.000 4.000 10 H 0.055 0.945 11 C -0.173 4.173 12 C -0.079 4.079 13 N -0.299 5.299 14 C 0.007 3.993 15 H 0.079 0.921 16 C -0.041 4.041 17 C -0.103 4.103 18 C -0.157 4.157 19 C 0.016 3.984 20 O -0.300 6.300 21 C 0.029 3.971 22 O -0.298 6.298 23 C -0.143 4.143 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.142 0.858 30 H 0.153 0.847 31 H 0.144 0.856 32 H 0.232 0.768 33 H 0.234 0.766 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.161 -7.007 1.616 14.997 hybrid contribution -0.260 -0.359 -0.544 0.702 sum 12.900 -7.367 1.072 14.894 Atomic orbital electron populations 1.69891 1.06281 1.27093 1.50292 1.24977 0.94677 0.99076 0.94216 0.86929 0.80512 0.83588 0.78230 1.20276 1.21983 1.18659 1.21026 0.88184 0.94503 1.51561 0.90881 1.19988 0.96658 0.89402 0.93912 0.94485 1.22948 0.99295 0.96978 0.98042 1.22842 0.97457 0.92730 0.94841 1.62915 1.54013 1.07582 1.05351 1.21258 0.91306 1.00048 0.86733 0.92057 1.19926 0.94157 0.94679 0.95334 1.20970 0.93401 0.98769 0.97133 1.21310 1.00737 1.00817 0.92860 1.18734 0.89685 1.01924 0.88021 1.84929 1.61402 1.45177 1.38466 1.18699 0.91560 0.98579 0.88253 1.84940 1.80313 1.21897 1.42609 1.21303 1.00349 1.00450 0.92216 0.92557 0.93331 0.91258 0.91504 0.93707 0.85800 0.84675 0.85590 0.76752 0.76596 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 2 C 0.07 2.06 5.36 -17.82 -0.10 1.96 16 3 Si 0.88 21.65 24.64 -169.99 -4.19 17.46 16 4 H -0.28 -6.54 6.88 56.52 0.39 -6.15 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.30 6.56 56.52 0.37 -5.93 16 7 C -0.51 -14.04 9.12 -34.44 -0.31 -14.35 16 8 H 0.07 2.15 7.60 -52.49 -0.40 1.75 16 9 C 0.02 0.45 2.06 -90.41 -0.19 0.27 16 10 H 0.04 0.91 6.81 -51.93 -0.35 0.56 16 11 C -0.13 -2.80 5.06 -24.87 -0.13 -2.92 16 12 C 0.05 0.88 7.55 -1.90 -0.01 0.86 16 13 N -0.67 -11.09 6.34 -104.34 -0.66 -11.76 16 14 C 0.12 2.23 3.14 -67.79 -0.21 2.02 16 15 H 0.06 1.23 7.29 -51.93 -0.38 0.85 16 16 C -0.04 -0.71 4.75 -104.62 -0.50 -1.21 16 17 C -0.08 -1.37 9.32 -39.57 -0.37 -1.74 16 18 C -0.14 -2.05 9.98 -39.46 -0.39 -2.44 16 19 C 0.06 0.93 6.72 -39.12 -0.26 0.67 16 20 O -0.49 -6.55 13.29 -34.21 -0.45 -7.00 16 21 C 0.07 1.18 6.72 -39.12 -0.26 0.92 16 22 O -0.49 -7.08 13.29 -34.20 -0.45 -7.54 16 23 C -0.12 -2.14 9.61 -39.46 -0.38 -2.52 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 1.56 5.05 -51.92 -0.26 1.29 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.33 4.70 8.92 -39.29 -0.35 4.34 16 30 H 0.14 2.15 7.67 -52.49 -0.40 1.75 16 31 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.38 2.91 9.06 45.56 0.41 3.32 16 33 H 0.38 3.30 9.06 45.56 0.41 3.71 16 34 H 0.13 2.26 8.05 -52.49 -0.42 1.84 16 LS Contribution 281.77 15.07 4.25 4.25 Total: -1.00 -32.64 281.77 -6.46 -39.10 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -2.61 Total: 10.28 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -3.11 Total: -18.48 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.11 Total: -38.08 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.91 Total: -14.54 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.19 Total: 17.46 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.64 -6.46 -39.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602958.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.980 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds