Wall clock time and date at job start Mon Mar 30 2020 04:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99781 * 2 1 4 4 H 1.48491 * 109.47124 * 270.00406 * 3 2 1 5 5 H 1.48505 * 109.46948 * 30.00612 * 3 2 1 6 6 H 1.48502 * 109.46682 * 150.00202 * 3 2 1 7 7 C 1.37881 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99786 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99899 * 179.97438 * 7 2 1 10 10 H 1.09000 * 110.27035 * 60.63988 * 9 7 2 11 11 C 1.54594 * 110.31094 * 298.54331 * 9 7 2 12 12 C 1.54937 * 102.92590 * 262.94501 * 11 9 7 13 13 N 1.48536 * 103.22396 * 322.58551 * 12 11 9 14 14 C 1.47902 * 105.82263 * 39.20678 * 13 12 11 15 15 H 1.09002 * 109.91604 * 94.01934 * 14 13 12 16 16 C 1.50698 * 109.92140 * 215.31584 * 14 13 12 17 17 C 1.38258 * 119.92245 * 38.27156 * 16 14 13 18 18 C 1.38244 * 120.14439 * 179.72404 * 17 16 14 19 19 C 1.38569 * 119.99666 * 0.55244 * 18 17 16 20 20 O 1.35990 * 120.06826 * 179.70382 * 19 18 17 21 21 C 1.39153 * 119.85634 * 359.72239 * 19 18 17 22 22 O 1.35987 * 120.07416 * 179.97438 * 21 19 18 23 23 C 1.38237 * 119.93097 * 218.54768 * 16 14 13 24 24 H 0.96998 * 120.00565 * 359.97438 * 1 2 3 25 25 H 1.08995 * 110.72211 * 144.57941 * 11 9 7 26 26 H 1.09010 * 110.87470 * 21.37764 * 11 9 7 27 27 H 1.08998 * 110.66665 * 204.15369 * 12 11 9 28 28 H 1.08998 * 110.66379 * 81.01935 * 12 11 9 29 29 H 1.00901 * 110.99803 * 159.71785 * 13 12 11 30 30 H 1.07999 * 119.92731 * 359.97438 * 17 16 14 31 31 H 1.07999 * 119.99879 * 180.27484 * 18 17 16 32 32 H 0.96702 * 114.00252 * 270.01201 * 20 19 18 33 33 H 0.96703 * 113.99880 * 270.02537 * 22 21 19 34 34 H 1.08001 * 119.99592 * 359.97400 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8895 -0.6929 0.8900 11 6 4.0477 -0.5009 -1.2748 12 6 4.3416 -1.6927 -2.2202 13 7 4.8652 -2.7349 -1.3005 14 6 4.0482 -2.6358 -0.0717 15 1 3.2170 -3.3393 -0.1206 16 6 4.9007 -2.9259 1.1366 17 6 6.2053 -2.4707 1.1856 18 6 6.9897 -2.7293 2.2942 19 6 6.4724 -3.4561 3.3545 20 8 7.2447 -3.7165 4.4432 21 6 5.1612 -3.9191 3.3028 22 8 4.6492 -4.6332 4.3407 23 6 4.3786 -3.6515 2.1911 24 1 -0.4851 0.8400 0.0004 25 1 4.9607 0.0531 -1.0571 26 1 3.2928 0.1566 -1.7061 27 1 5.0936 -1.4200 -2.9606 28 1 3.4271 -2.0327 -2.7062 29 1 4.7883 -3.6527 -1.7128 30 1 6.6112 -1.9083 0.3577 31 1 8.0070 -2.3687 2.3318 32 1 7.7472 -4.5403 4.3810 33 1 4.7807 -5.5882 4.2638 34 1 3.3605 -4.0094 2.1485 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260602958.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:44 Heat of formation + Delta-G solvation = -82.322093 kcal Electronic energy + Delta-G solvation = -18224.284733 eV Core-core repulsion = 15314.171875 eV Total energy + Delta-G solvation = -2910.112857 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.24123 -39.68750 -37.85040 -37.13410 -34.76180 -32.00419 -31.65215 -30.71320 -28.51017 -26.14084 -23.77245 -23.31762 -22.20244 -20.95816 -19.65304 -18.81340 -18.49227 -17.59332 -16.98627 -16.83648 -16.21917 -15.84614 -15.69221 -15.14025 -14.66627 -14.45226 -14.07418 -13.57104 -13.48819 -13.26881 -12.98435 -12.83198 -12.56668 -12.41937 -12.19222 -11.86994 -11.77804 -11.51544 -11.11549 -11.00156 -10.76951 -9.76246 -9.48187 -9.28993 -8.33448 -6.37282 0.24564 0.32874 1.28333 1.34840 1.44697 2.30456 2.61497 3.00708 3.12544 3.26746 3.45438 3.94964 4.00138 4.07756 4.33085 4.39068 4.44833 4.54284 4.57232 4.80657 4.93899 4.99393 5.04833 5.17257 5.24866 5.28961 5.38749 5.47738 5.57375 5.68148 5.86942 5.91148 6.25363 6.53908 6.66987 6.68393 7.00787 7.27904 8.82764 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024292 B = 0.007051 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.367750 B = 3970.146443 C = 4331.655771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.015 3.985 3 Si 0.940 3.060 4 H -0.257 1.257 5 H -0.297 1.297 6 H -0.250 1.250 7 C -0.515 4.515 8 H 0.032 0.968 9 C 0.016 3.984 10 H 0.022 0.978 11 C -0.137 4.137 12 C 0.056 3.944 13 N -0.653 5.653 14 C 0.125 3.875 15 H 0.038 0.962 16 C -0.059 4.059 17 C -0.086 4.086 18 C -0.131 4.131 19 C 0.068 3.932 20 O -0.498 6.498 21 C 0.071 3.929 22 O -0.502 6.502 23 C -0.143 4.143 24 H 0.266 0.734 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.103 0.897 28 H 0.032 0.968 29 H 0.344 0.656 30 H 0.142 0.858 31 H 0.155 0.845 32 H 0.406 0.594 33 H 0.405 0.595 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.486 -8.347 0.889 18.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.182 4.182 3 Si 0.765 3.235 4 H -0.182 1.182 5 H -0.224 1.224 6 H -0.173 1.173 7 C -0.553 4.553 8 H 0.051 0.949 9 C -0.003 4.003 10 H 0.040 0.960 11 C -0.175 4.175 12 C -0.073 4.073 13 N -0.282 5.282 14 C 0.015 3.985 15 H 0.056 0.944 16 C -0.060 4.060 17 C -0.104 4.104 18 C -0.150 4.150 19 C 0.023 3.977 20 O -0.310 6.310 21 C 0.026 3.974 22 O -0.314 6.314 23 C -0.162 4.162 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.121 0.879 28 H 0.051 0.949 29 H 0.159 0.841 30 H 0.160 0.840 31 H 0.173 0.827 32 H 0.264 0.736 33 H 0.263 0.737 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 16.532 -6.830 1.541 17.954 hybrid contribution -1.304 -0.599 -0.415 1.494 sum 15.227 -7.429 1.126 16.981 Atomic orbital electron populations 1.70040 1.08161 1.28052 1.52504 1.25828 0.95370 1.02925 0.94080 0.85947 0.79425 0.78851 0.79309 1.18159 1.22420 1.17338 1.21305 0.90840 0.92860 1.50258 0.94941 1.19890 0.93574 0.92287 0.94550 0.96037 1.22882 0.99398 0.97985 0.97208 1.22856 0.98219 0.91469 0.94783 1.62946 1.52477 1.08517 1.04266 1.20952 0.91476 0.97096 0.88995 0.94363 1.19797 0.94963 0.96372 0.94824 1.21034 0.92643 0.98681 0.98035 1.21560 1.01753 0.99771 0.91879 1.18772 0.89442 1.01169 0.88288 1.84857 1.61398 1.47112 1.37682 1.18745 0.91923 0.98866 0.87907 1.84865 1.80476 1.23998 1.42062 1.21297 1.00142 1.01489 0.93250 0.92531 0.91288 0.93047 0.87879 0.94909 0.84052 0.83983 0.82694 0.73602 0.73729 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 2 C 0.02 0.89 5.36 84.66 0.45 1.34 16 3 Si 0.94 44.85 24.64 68.60 1.69 46.54 16 4 H -0.26 -11.36 6.88 99.48 0.68 -10.68 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 6 H -0.25 -11.32 6.56 99.48 0.65 -10.66 16 7 C -0.51 -29.18 9.12 25.60 0.23 -28.95 16 8 H 0.03 2.04 7.60 -2.91 -0.02 2.02 16 9 C 0.02 0.76 2.06 -10.66 -0.02 0.73 16 10 H 0.02 1.06 6.81 -2.39 -0.02 1.04 16 11 C -0.14 -5.44 5.06 31.80 0.16 -5.28 16 12 C 0.06 1.81 7.55 86.65 0.65 2.47 16 13 N -0.65 -20.36 6.34 -484.01 -3.07 -23.43 16 14 C 0.12 4.81 3.14 44.31 0.14 4.95 16 15 H 0.04 1.62 7.29 -2.39 -0.02 1.60 16 16 C -0.06 -2.05 4.75 -19.86 -0.09 -2.15 16 17 C -0.09 -2.58 9.32 22.28 0.21 -2.37 16 18 C -0.13 -3.44 9.98 22.35 0.22 -3.21 16 19 C 0.07 1.89 6.72 22.57 0.15 2.04 16 20 O -0.50 -11.52 13.29 -79.57 -1.06 -12.58 16 21 C 0.07 2.17 6.72 22.57 0.15 2.32 16 22 O -0.50 -13.87 13.29 -79.54 -1.06 -14.93 16 23 C -0.14 -4.95 9.61 22.35 0.21 -4.73 16 24 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 25 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.05 2.23 5.05 -2.38 -0.01 2.22 16 27 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.34 9.17 8.92 -89.69 -0.80 8.37 16 30 H 0.14 4.05 7.67 -2.91 -0.02 4.03 16 31 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 32 H 0.41 4.63 9.06 -74.06 -0.67 3.96 16 33 H 0.40 6.34 9.06 -74.06 -0.67 5.67 16 34 H 0.12 4.28 8.05 -2.91 -0.02 4.26 16 Total: -1.00 -72.06 281.77 -1.78 -73.84 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -1.06 Total: 22.49 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 2.47 Total: -32.83 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -2.77 Total: -82.53 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -2.11 Total: -27.50 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.69 Total: 46.54 kcal Total: -72.06 -1.78 -73.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602958.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.481 kcal (2) G-P(sol) polarization free energy of solvation -72.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds