Wall clock time and date at job start Mon Mar 30 2020 04:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47346 * 305.00026 * 10 9 7 12 12 N 1.46905 * 109.47150 * 64.99640 * 10 9 7 13 13 C 1.50699 * 109.47337 * 184.99952 * 10 9 7 14 14 C 1.38291 * 119.95502 * 279.99632 * 13 10 9 15 15 C 1.38087 * 120.03338 * 180.09008 * 14 13 10 16 16 C 1.38846 * 119.98999 * 359.97438 * 15 14 13 17 17 C 1.38589 * 119.86459 * 359.84579 * 16 15 14 18 18 C 1.38213 * 119.95486 * 99.72964 * 13 10 9 19 19 C 1.50784 * 120.42860 * 180.36482 * 17 16 15 20 20 O 1.43083 * 109.29051 * 343.70562 * 19 17 16 21 21 C 1.43269 * 113.02821 * 48.64725 * 20 19 17 22 22 O 1.35971 * 119.59793 * 179.59796 * 16 15 14 23 23 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.00898 * 110.99705 * 60.00524 * 12 10 9 27 27 H 1.00897 * 110.99904 * 183.95433 * 12 10 9 28 28 H 1.07997 * 119.98283 * 0.07616 * 14 13 10 29 29 H 1.08005 * 120.00715 * 180.02562 * 15 14 13 30 30 H 1.07994 * 119.94766 * 359.97438 * 18 13 10 31 31 H 1.08999 * 109.49981 * 103.64794 * 19 17 16 32 32 H 1.08997 * 109.50444 * 223.72390 * 19 17 16 33 33 H 1.09001 * 109.61101 * 54.33773 * 21 20 19 34 34 H 1.09000 * 109.60800 * 174.84706 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 1 3.5864 -3.1759 0.8415 12 7 3.6332 -3.2932 -1.2556 13 6 5.5232 -2.6386 0.1243 14 6 6.3086 -2.3971 -0.9880 15 6 7.6849 -2.4003 -0.8763 16 6 8.2808 -2.6456 0.3536 17 6 7.4915 -2.8837 1.4676 18 6 6.1138 -2.8763 1.3511 19 6 8.1250 -3.1435 2.8110 20 8 9.5061 -3.4692 2.6273 21 6 10.1895 -2.5488 1.7679 22 8 9.6368 -2.6551 0.4529 23 1 -0.4850 0.8401 -0.0004 24 1 3.8751 -0.6798 -0.8895 25 1 3.8745 -0.6810 0.8905 26 1 4.0243 -2.8118 -2.0514 27 1 3.9021 -4.2657 -1.2533 28 1 5.8452 -2.2060 -1.9447 29 1 8.2978 -2.2112 -1.7452 30 1 5.4982 -3.0600 2.2192 31 1 8.0410 -2.2513 3.4315 32 1 7.6163 -3.9750 3.2986 33 1 10.0560 -1.5330 2.1399 34 1 11.2511 -2.7941 1.7395 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261096688.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:53 Heat of formation + Delta-G solvation = -61.711821 kcal Electronic energy + Delta-G solvation = -17876.919332 eV Core-core repulsion = 14967.700203 eV Total energy + Delta-G solvation = -2909.219129 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.98848 -38.51316 -36.61941 -35.14003 -32.41325 -31.67118 -29.93173 -28.84895 -26.60978 -26.02077 -23.94532 -22.43657 -21.23157 -19.40906 -18.66905 -17.17598 -16.87955 -16.49455 -15.65597 -15.39805 -14.87168 -14.56219 -14.47603 -14.03489 -13.95906 -13.56983 -13.09540 -12.84084 -12.39426 -12.23087 -11.84255 -11.61697 -11.37481 -10.94473 -10.88870 -10.40193 -10.23491 -10.00568 -9.76033 -9.12967 -8.80615 -8.47076 -8.13588 -7.89313 -5.94847 -3.89983 1.27405 1.45009 3.02851 3.33057 3.36373 3.40854 3.43363 3.76886 4.41730 4.50638 4.57239 4.72747 4.93687 5.06099 5.15693 5.23078 5.29534 5.37212 5.42076 5.52914 5.68212 5.91023 6.12783 6.22319 6.26511 6.47918 6.53317 6.72148 6.81363 7.09350 7.28321 7.30445 7.77949 7.92894 8.09496 8.66831 9.17775 9.67435 11.18949 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.031912 B = 0.005355 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.207920 B = 5227.426258 C = 5406.462996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.063 3.937 3 Si 0.872 3.128 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.495 4.495 8 H 0.081 0.919 9 C 0.000 4.000 10 C 0.144 3.856 11 H 0.083 0.917 12 N -0.819 5.819 13 C -0.127 4.127 14 C -0.084 4.084 15 C -0.141 4.141 16 C 0.116 3.884 17 C -0.202 4.202 18 C -0.071 4.071 19 C 0.104 3.896 20 O -0.389 6.389 21 C 0.223 3.777 22 O -0.335 6.335 23 H 0.261 0.739 24 H 0.011 0.989 25 H 0.018 0.982 26 H 0.333 0.667 27 H 0.326 0.674 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.060 0.940 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.455 -5.286 2.918 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.137 4.137 3 Si 0.700 3.300 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.533 4.533 8 H 0.099 0.901 9 C -0.037 4.037 10 C 0.033 3.967 11 H 0.101 0.899 12 N -0.345 5.345 13 C -0.130 4.130 14 C -0.102 4.102 15 C -0.160 4.160 16 C 0.072 3.928 17 C -0.204 4.204 18 C -0.090 4.090 19 C 0.028 3.972 20 O -0.309 6.309 21 C 0.110 3.890 22 O -0.251 6.251 23 H 0.070 0.930 24 H 0.029 0.971 25 H 0.037 0.963 26 H 0.146 0.854 27 H 0.137 0.863 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.089 0.911 32 H 0.131 0.869 33 H 0.078 0.922 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 18.755 -5.155 3.070 19.691 hybrid contribution 1.339 1.146 -0.076 1.764 sum 20.094 -4.009 2.994 20.707 Atomic orbital electron populations 1.69907 1.06136 1.26481 1.52032 1.24998 0.94673 0.98711 0.95290 0.86906 0.80307 0.84402 0.78372 1.20488 1.21514 1.19342 1.21038 0.88740 0.94596 1.48955 0.90120 1.19627 0.97920 0.89924 0.96269 1.20530 0.84564 0.98718 0.92921 0.89852 1.58805 1.67066 1.05047 1.03628 1.21374 0.99690 0.98983 0.92941 1.20857 0.92214 0.98046 0.99098 1.20469 0.94707 1.05021 0.95766 1.18427 0.81533 0.98667 0.94201 1.20257 0.95211 1.08967 0.95929 1.20703 0.92348 0.98052 0.97894 1.21542 0.80422 1.02260 0.93002 1.88246 1.22812 1.52772 1.67051 1.24375 0.95720 0.93162 0.75695 1.86203 1.18542 1.88849 1.31530 0.92960 0.97110 0.96343 0.85368 0.86322 0.85328 0.85310 0.85269 0.91090 0.86857 0.92244 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.15 13.96 55.43 0.77 -27.37 16 2 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 3 Si 0.87 21.83 27.47 -169.99 -4.67 17.16 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.50 -13.96 9.39 -34.44 -0.32 -14.28 16 8 H 0.08 2.49 7.99 -52.49 -0.42 2.07 16 9 C 0.00 0.00 3.67 -27.88 -0.10 -0.10 16 10 C 0.14 2.73 2.93 -68.86 -0.20 2.53 16 11 H 0.08 1.62 8.00 -51.93 -0.42 1.20 16 12 N -0.82 -14.51 8.77 -5.65 -0.05 -14.56 16 13 C -0.13 -2.07 4.95 -104.61 -0.52 -2.58 16 14 C -0.08 -1.25 9.29 -39.62 -0.37 -1.62 16 15 C -0.14 -2.00 9.98 -39.41 -0.39 -2.40 16 16 C 0.12 1.69 6.56 -39.23 -0.26 1.43 16 17 C -0.20 -2.83 5.82 -104.44 -0.61 -3.43 16 18 C -0.07 -1.05 9.34 -39.58 -0.37 -1.42 16 19 C 0.10 1.17 6.87 36.05 0.25 1.41 16 20 O -0.39 -4.61 10.97 -59.11 -0.65 -5.26 16 21 C 0.22 2.25 7.94 101.05 0.80 3.05 16 22 O -0.33 -4.47 10.47 -43.53 -0.46 -4.93 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 25 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 26 H 0.33 5.48 7.34 -39.29 -0.29 5.19 16 27 H 0.33 4.89 9.06 -39.29 -0.36 4.53 16 28 H 0.13 1.76 6.66 -52.49 -0.35 1.41 16 29 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 30 H 0.13 1.71 8.03 -52.49 -0.42 1.29 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 34 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 285.36 15.07 4.30 4.30 Total: -1.00 -32.88 285.36 -7.23 -40.11 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.30 Total: 6.19 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -2.19 Total: -15.66 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.72 Total: -41.93 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -1.10 Total: -10.18 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.88 -7.23 -40.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096688.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.597 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds