Wall clock time and date at job start Mon Mar 30 2020 04:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47346 * 305.00026 * 10 9 7 12 12 N 1.46905 * 109.47150 * 64.99640 * 10 9 7 13 13 C 1.50699 * 109.47337 * 184.99952 * 10 9 7 14 14 C 1.38291 * 119.95502 * 279.99632 * 13 10 9 15 15 C 1.38087 * 120.03338 * 180.09008 * 14 13 10 16 16 C 1.38846 * 119.98999 * 359.97438 * 15 14 13 17 17 C 1.38589 * 119.86459 * 359.84579 * 16 15 14 18 18 C 1.38213 * 119.95486 * 99.72964 * 13 10 9 19 19 C 1.50784 * 120.42860 * 180.36482 * 17 16 15 20 20 O 1.43083 * 109.29051 * 343.70562 * 19 17 16 21 21 C 1.43269 * 113.02821 * 48.64725 * 20 19 17 22 22 O 1.35971 * 119.59793 * 179.59796 * 16 15 14 23 23 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.00898 * 110.99705 * 60.00524 * 12 10 9 27 27 H 1.00897 * 110.99904 * 183.95433 * 12 10 9 28 28 H 1.07997 * 119.98283 * 0.07616 * 14 13 10 29 29 H 1.08005 * 120.00715 * 180.02562 * 15 14 13 30 30 H 1.07994 * 119.94766 * 359.97438 * 18 13 10 31 31 H 1.08999 * 109.49981 * 103.64794 * 19 17 16 32 32 H 1.08997 * 109.50444 * 223.72390 * 19 17 16 33 33 H 1.09001 * 109.61101 * 54.33773 * 21 20 19 34 34 H 1.09000 * 109.60800 * 174.84706 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 1 3.5864 -3.1759 0.8415 12 7 3.6332 -3.2932 -1.2556 13 6 5.5232 -2.6386 0.1243 14 6 6.3086 -2.3971 -0.9880 15 6 7.6849 -2.4003 -0.8763 16 6 8.2808 -2.6456 0.3536 17 6 7.4915 -2.8837 1.4676 18 6 6.1138 -2.8763 1.3511 19 6 8.1250 -3.1435 2.8110 20 8 9.5061 -3.4692 2.6273 21 6 10.1895 -2.5488 1.7679 22 8 9.6368 -2.6551 0.4529 23 1 -0.4850 0.8401 -0.0004 24 1 3.8751 -0.6798 -0.8895 25 1 3.8745 -0.6810 0.8905 26 1 4.0243 -2.8118 -2.0514 27 1 3.9021 -4.2657 -1.2533 28 1 5.8452 -2.2060 -1.9447 29 1 8.2978 -2.2112 -1.7452 30 1 5.4982 -3.0600 2.2192 31 1 8.0410 -2.2513 3.4315 32 1 7.6163 -3.9750 3.2986 33 1 10.0560 -1.5330 2.1399 34 1 11.2511 -2.7941 1.7395 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261096688.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:52 Heat of formation + Delta-G solvation = -85.337224 kcal Electronic energy + Delta-G solvation = -17877.943806 eV Core-core repulsion = 14967.700203 eV Total energy + Delta-G solvation = -2910.243603 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.96249 -39.64923 -37.55254 -36.56399 -34.48159 -32.75011 -31.07319 -30.73511 -27.55899 -27.02885 -25.57484 -23.56336 -22.74015 -20.72383 -19.63898 -18.89390 -18.12441 -17.54785 -16.96417 -16.49775 -16.16747 -16.04727 -15.54970 -15.40682 -15.09180 -14.90409 -14.50652 -14.22831 -13.84617 -13.43236 -13.36481 -13.13464 -12.82743 -12.36410 -12.07804 -11.84516 -11.75404 -11.61432 -11.29111 -11.23102 -10.70054 -9.86452 -9.48724 -9.09450 -8.19211 -6.19166 0.19147 0.32120 1.36343 1.37657 1.48520 2.11452 2.40228 2.54307 2.70286 3.14727 3.47114 3.70434 3.82442 3.89693 3.94128 4.24877 4.25795 4.31219 4.32530 4.51145 4.55790 4.67621 4.85483 4.96453 5.08894 5.20345 5.23784 5.38498 5.56933 5.63889 5.71340 5.76263 6.29139 6.37010 6.53026 6.80932 6.90353 7.42057 8.98077 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.031912 B = 0.005355 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.207920 B = 5227.426258 C = 5406.462996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.000 4.000 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.251 1.251 7 C -0.496 4.496 8 H 0.039 0.961 9 C 0.005 3.995 10 C 0.156 3.844 11 H 0.071 0.929 12 N -0.833 5.833 13 C -0.143 4.143 14 C -0.087 4.087 15 C -0.146 4.146 16 C 0.108 3.892 17 C -0.206 4.206 18 C -0.076 4.076 19 C 0.101 3.899 20 O -0.400 6.400 21 C 0.212 3.788 22 O -0.345 6.345 23 H 0.262 0.738 24 H 0.014 0.986 25 H 0.018 0.982 26 H 0.340 0.660 27 H 0.341 0.659 28 H 0.137 0.863 29 H 0.147 0.853 30 H 0.139 0.861 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.256 -4.690 3.271 22.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.195 4.195 3 Si 0.767 3.233 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.175 1.175 7 C -0.534 4.534 8 H 0.057 0.943 9 C -0.033 4.033 10 C 0.044 3.956 11 H 0.089 0.911 12 N -0.363 5.363 13 C -0.145 4.145 14 C -0.105 4.105 15 C -0.164 4.164 16 C 0.063 3.937 17 C -0.207 4.207 18 C -0.095 4.095 19 C 0.026 3.974 20 O -0.320 6.320 21 C 0.100 3.900 22 O -0.261 6.261 23 H 0.071 0.929 24 H 0.033 0.967 25 H 0.036 0.964 26 H 0.154 0.846 27 H 0.154 0.846 28 H 0.155 0.845 29 H 0.164 0.836 30 H 0.157 0.843 31 H 0.106 0.894 32 H 0.146 0.854 33 H 0.093 0.907 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 21.588 -4.581 3.425 22.333 hybrid contribution 0.508 0.862 -0.170 1.015 sum 22.096 -3.718 3.256 22.642 Atomic orbital electron populations 1.70073 1.08143 1.27585 1.53981 1.25915 0.95487 1.02945 0.95167 0.85777 0.79391 0.79241 0.78877 1.19583 1.21306 1.17490 1.21295 0.91387 0.92948 1.47783 0.94308 1.19525 0.94491 0.93158 0.96130 1.20123 0.86609 0.95858 0.93017 0.91116 1.58717 1.67774 1.06234 1.03569 1.21043 0.97759 1.01500 0.94242 1.20952 0.92611 0.97875 0.99054 1.20683 0.94544 1.04648 0.96546 1.18673 0.82364 0.98153 0.94487 1.20531 0.94825 1.08120 0.97194 1.20845 0.93081 0.97836 0.97745 1.21699 0.80273 1.03701 0.91761 1.88238 1.22941 1.53527 1.67261 1.24908 0.96877 0.93912 0.74263 1.86196 1.17753 1.88650 1.33540 0.92905 0.96732 0.96360 0.84553 0.84563 0.84499 0.83565 0.84277 0.89357 0.85442 0.90696 0.81241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.87 13.96 21.45 0.30 -60.57 16 2 C 0.00 0.01 5.47 84.66 0.46 0.47 16 3 Si 0.94 44.88 27.47 68.60 1.88 46.77 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 7 C -0.50 -28.49 9.39 25.60 0.24 -28.25 16 8 H 0.04 2.49 7.99 -2.91 -0.02 2.47 16 9 C 0.00 0.21 3.67 29.85 0.11 0.32 16 10 C 0.16 5.85 2.93 44.17 0.13 5.98 16 11 H 0.07 2.79 8.00 -2.39 -0.02 2.77 16 12 N -0.83 -29.40 8.77 -171.79 -1.51 -30.90 16 13 C -0.14 -4.46 4.95 -19.86 -0.10 -4.56 16 14 C -0.09 -2.44 9.29 22.25 0.21 -2.23 16 15 C -0.15 -3.83 9.98 22.38 0.22 -3.60 16 16 C 0.11 2.89 6.56 22.50 0.15 3.04 16 17 C -0.21 -5.27 5.82 -19.75 -0.11 -5.39 16 18 C -0.08 -2.14 9.34 22.27 0.21 -1.93 16 19 C 0.10 2.00 6.87 71.26 0.49 2.49 16 20 O -0.40 -8.31 10.97 -126.15 -1.38 -9.70 16 21 C 0.21 3.60 7.94 113.37 0.90 4.50 16 22 O -0.34 -8.28 10.47 -70.39 -0.74 -9.02 16 23 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 24 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 25 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 26 H 0.34 10.98 7.34 -89.70 -0.66 10.32 16 27 H 0.34 10.10 9.06 -89.70 -0.81 9.29 16 28 H 0.14 3.51 6.66 -2.91 -0.02 3.49 16 29 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 30 H 0.14 3.49 8.03 -2.91 -0.02 3.47 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.08 1.05 8.13 -2.39 -0.02 1.03 16 34 H 0.17 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -71.08 285.36 1.06 -70.02 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -0.40 Total: 22.55 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 2.90 Total: -29.15 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -1.21 Total: -91.48 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -2.12 Total: -18.71 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -71.08 1.06 -70.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096688.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.314 kcal (2) G-P(sol) polarization free energy of solvation -71.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds