Wall clock time and date at job start Mon Mar 30 2020 03:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.22296 * 301.93133 * 9 7 2 11 11 N 1.46768 * 110.24715 * 63.95524 * 9 7 2 12 12 C 1.34419 * 111.30251 * 136.01412 * 11 9 7 13 13 O 1.21280 * 124.94022 * 179.59037 * 12 11 9 14 14 C 1.51277 * 110.11445 * 359.59111 * 12 11 9 15 15 C 1.54482 * 110.24460 * 179.97438 * 9 7 2 16 16 H 1.09000 * 110.96628 * 97.46619 * 15 9 7 17 17 C 1.50698 * 110.96840 * 333.73919 * 15 9 7 18 18 C 1.38271 * 119.98717 * 119.99963 * 17 15 9 19 19 C 1.38217 * 120.05263 * 180.02562 * 18 17 15 20 20 C 1.38224 * 120.02624 * 359.97438 * 19 18 17 21 21 C 1.38433 * 119.97355 * 0.02562 * 20 19 18 22 22 F 1.35102 * 120.02750 * 180.02562 * 21 20 19 23 23 C 1.38177 * 119.99064 * 299.72890 * 17 15 9 24 24 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 25 25 H 0.97003 * 124.34214 * 316.02995 * 11 9 7 26 26 H 1.09000 * 110.48775 * 225.06611 * 14 12 11 27 27 H 1.08999 * 110.59938 * 102.48185 * 14 12 11 28 28 H 1.08003 * 119.97215 * 0.02562 * 18 17 15 29 29 H 1.07998 * 119.98727 * 180.02562 * 19 18 17 30 30 H 1.08001 * 120.01192 * 179.97438 * 20 19 18 31 31 H 1.08006 * 120.00924 * 359.97438 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.5946 -2.5543 0.8700 11 7 0.4731 -2.6375 -1.2351 12 6 0.5867 -3.8749 -1.7476 13 8 0.0414 -4.2601 -2.7601 14 6 1.4939 -4.7170 -0.8778 15 6 2.2390 -3.6868 0.0015 16 1 2.3875 -4.0707 1.0107 17 6 3.5536 -3.2946 -0.6223 18 6 4.7199 -3.3736 0.1162 19 6 5.9262 -3.0138 -0.4544 20 6 5.9681 -2.5750 -1.7645 21 6 4.8012 -2.4955 -2.5049 22 9 4.8409 -2.0672 -3.7856 23 6 3.5938 -2.8616 -1.9339 24 1 -0.4850 -0.8401 -0.0004 25 1 -0.0551 -1.9271 -1.6317 26 1 2.2000 -5.2759 -1.4919 27 1 0.9085 -5.3958 -0.2576 28 1 4.6881 -3.7168 1.1398 29 1 6.8366 -3.0763 0.1232 30 1 6.9108 -2.2935 -2.2100 31 1 2.6833 -2.8045 -2.5121 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261100202.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:38 Heat of formation + Delta-G solvation = -83.212563 kcal Electronic energy + Delta-G solvation = -18370.224161 eV Core-core repulsion = 15336.612385 eV Total energy + Delta-G solvation = -3033.611776 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.85710 -41.68382 -39.57736 -37.55544 -34.73771 -33.24844 -31.38956 -30.37082 -29.04754 -25.77868 -24.05735 -23.40118 -21.48280 -21.29795 -19.51620 -18.43954 -17.62013 -17.04260 -17.02209 -16.58761 -16.56548 -15.85437 -15.65606 -15.35063 -14.83987 -14.47923 -14.27724 -14.19701 -13.56855 -13.15701 -12.95708 -12.79231 -12.70433 -12.43451 -12.24491 -11.95503 -11.66492 -11.08107 -10.92458 -10.60514 -9.72370 -9.66783 -9.45948 -8.61551 -6.40829 0.32714 0.40703 1.53262 1.55949 1.67432 1.74612 2.51021 2.63351 2.76039 3.24229 3.36120 3.65750 3.69840 3.91779 4.00128 4.16525 4.26702 4.42436 4.53014 4.64814 4.76311 4.84331 5.03498 5.14554 5.24465 5.33215 5.49124 5.70412 5.74967 6.03574 6.08420 6.20331 6.35811 6.62510 7.36058 7.38399 8.74366 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.014979 B = 0.012242 C = 0.008754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.812394 B = 2286.659348 C = 3197.804193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 1.101 2.899 4 H -0.291 1.291 5 H -0.263 1.263 6 H -0.286 1.286 7 C -0.591 4.591 8 H 0.070 0.930 9 C 0.234 3.766 10 H 0.032 0.968 11 N -0.712 5.712 12 C 0.494 3.506 13 O -0.613 6.613 14 C -0.137 4.137 15 C -0.047 4.047 16 H 0.131 0.869 17 C -0.018 4.018 18 C -0.124 4.124 19 C -0.085 4.085 20 C -0.164 4.164 21 C 0.063 3.937 22 F -0.160 7.160 23 C -0.149 4.149 24 H 0.263 0.737 25 H 0.391 0.609 26 H 0.104 0.896 27 H 0.131 0.869 28 H 0.159 0.841 29 H 0.170 0.830 30 H 0.153 0.847 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.194 -7.031 4.068 14.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.216 4.216 3 Si 0.925 3.075 4 H -0.218 1.218 5 H -0.188 1.188 6 H -0.212 1.212 7 C -0.629 4.629 8 H 0.088 0.912 9 C 0.133 3.867 10 H 0.049 0.951 11 N -0.363 5.363 12 C 0.282 3.718 13 O -0.498 6.498 14 C -0.176 4.176 15 C -0.065 4.065 16 H 0.149 0.851 17 C -0.018 4.018 18 C -0.142 4.142 19 C -0.102 4.102 20 C -0.182 4.182 21 C 0.044 3.956 22 F -0.139 7.139 23 C -0.168 4.168 24 H 0.074 0.926 25 H 0.228 0.772 26 H 0.123 0.877 27 H 0.149 0.851 28 H 0.176 0.824 29 H 0.188 0.812 30 H 0.170 0.830 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.815 -5.662 3.622 13.593 hybrid contribution -0.857 -0.753 -1.003 1.519 sum 10.958 -6.415 2.620 12.965 Atomic orbital electron populations 1.70945 1.07838 1.30475 1.47956 1.26893 0.96440 1.05950 0.92358 0.83104 0.74964 0.72548 0.76893 1.21806 1.18767 1.21158 1.22502 0.95216 0.91260 1.53952 0.91174 1.19620 0.89190 0.95148 0.82774 0.95053 1.47525 1.48775 1.12032 1.27976 1.21674 0.81427 0.84197 0.84533 1.90618 1.53853 1.77225 1.28095 1.22426 0.98626 0.97870 0.98691 1.21220 0.91069 0.93929 1.00331 0.85100 1.19371 0.95351 0.95488 0.91625 1.21439 0.91091 1.00625 1.01059 1.21354 0.99303 0.96140 0.93423 1.21340 0.96747 1.04010 0.96116 1.18048 0.95856 1.02264 0.79422 1.91418 1.97441 1.88045 1.36988 1.20870 0.95791 1.02715 0.97448 0.92596 0.77207 0.87735 0.85113 0.82379 0.81227 0.82972 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.76 13.26 21.45 0.28 -51.47 16 2 C -0.02 -0.79 5.40 84.65 0.46 -0.33 16 3 Si 1.10 47.52 29.90 68.60 2.05 49.58 16 4 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.59 -28.17 7.62 25.60 0.20 -27.98 16 8 H 0.07 3.31 5.87 -2.91 -0.02 3.29 16 9 C 0.23 9.90 2.62 44.70 0.12 10.02 16 10 H 0.03 1.41 7.95 -2.39 -0.02 1.39 16 11 N -0.71 -32.28 4.97 -442.98 -2.20 -34.48 16 12 C 0.49 21.26 6.88 87.90 0.60 21.87 16 13 O -0.61 -30.75 18.03 -3.03 -0.05 -30.80 16 14 C -0.14 -4.32 6.10 30.57 0.19 -4.13 16 15 C -0.05 -1.50 3.32 -10.50 -0.03 -1.54 16 16 H 0.13 3.24 7.96 -2.39 -0.02 3.22 16 17 C -0.02 -0.59 2.91 -19.87 -0.06 -0.65 16 18 C -0.12 -3.14 9.60 22.27 0.21 -2.92 16 19 C -0.08 -1.90 10.04 22.26 0.22 -1.67 16 20 C -0.16 -4.42 10.03 22.31 0.22 -4.19 16 21 C 0.06 2.24 7.30 22.37 0.16 2.40 16 22 F -0.16 -6.09 17.27 44.97 0.78 -5.31 16 23 C -0.15 -5.73 7.90 22.31 0.18 -5.55 16 24 H 0.26 14.45 6.12 -92.71 -0.57 13.88 16 25 H 0.39 19.54 7.68 -92.71 -0.71 18.82 16 26 H 0.10 3.09 7.86 -2.39 -0.02 3.07 16 27 H 0.13 3.29 8.14 -2.39 -0.02 3.28 16 28 H 0.16 2.93 7.99 -2.91 -0.02 2.91 16 29 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 30 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.09 4.21 6.07 -2.91 -0.02 4.19 16 Total: -1.00 -64.90 266.24 3.99 -60.92 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.66 Total: 26.27 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 2.47 Total: -14.69 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -1.92 Total: -85.95 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.05 Total: -30.80 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 0.78 Total: -5.31 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.05 Total: 49.58 kcal Total: -64.90 3.99 -60.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100202.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.297 kcal (2) G-P(sol) polarization free energy of solvation -64.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds