Wall clock time and date at job start Mon Mar 30 2020 04:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 119.99852 * 2 1 4 4 H 1.48499 * 109.47235 * 264.90398 * 3 2 1 5 5 H 1.48494 * 109.47335 * 24.90775 * 3 2 1 6 6 H 1.48507 * 109.47308 * 144.90727 * 3 2 1 7 7 C 1.37874 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00231 * 2.14243 * 7 2 1 9 9 C 1.50697 * 119.99993 * 182.15070 * 7 2 1 10 10 H 1.09002 * 109.47219 * 329.88136 * 9 7 2 11 11 N 1.46904 * 109.47497 * 89.88208 * 9 7 2 12 12 C 1.50706 * 109.47206 * 209.88491 * 9 7 2 13 13 C 1.38256 * 120.00038 * 265.18408 * 12 9 7 14 14 C 1.38210 * 119.99969 * 180.20925 * 13 12 9 15 15 C 1.38257 * 119.99838 * 359.85680 * 14 13 12 16 16 C 1.38208 * 120.00462 * 359.95701 * 15 14 13 17 17 C 1.38212 * 119.99891 * 85.00197 * 12 9 7 18 18 C 1.50695 * 120.00101 * 359.97438 * 17 12 9 19 19 C 1.53000 * 109.47057 * 84.73296 * 18 17 12 20 20 C 1.50700 * 109.47496 * 179.97438 * 19 18 17 21 21 O 1.20823 * 119.99975 * 0.02562 * 20 19 18 22 22 O 1.34231 * 119.99955 * 180.02562 * 20 19 18 23 23 H 0.97004 * 120.00438 * 0.02562 * 1 2 3 24 24 H 1.00901 * 110.99991 * 293.39898 * 11 9 7 25 25 H 1.00896 * 110.99750 * 57.35575 * 11 9 7 26 26 H 1.08000 * 119.99825 * 0.04354 * 13 12 9 27 27 H 1.08002 * 119.99559 * 179.83876 * 14 13 12 28 28 H 1.08003 * 119.99386 * 179.97438 * 15 14 13 29 29 H 1.08000 * 120.00524 * 179.97438 * 16 15 14 30 30 H 1.08995 * 109.47379 * 324.73550 * 18 17 12 31 31 H 1.08999 * 109.47484 * 204.72778 * 18 17 12 32 32 H 1.09005 * 109.46867 * 59.99907 * 19 18 17 33 33 H 1.08998 * 109.47277 * 300.00199 * 19 18 17 34 34 H 0.96700 * 116.99756 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.6042 1.9842 -1.3945 5 1 1.3969 2.6813 0.5896 6 1 3.4887 1.4737 0.8049 7 6 2.0045 -1.1940 0.0005 8 1 1.4650 -2.1291 -0.0340 9 6 3.5106 -1.1945 0.0495 10 1 3.8903 -0.2964 -0.4377 11 7 3.9551 -1.2172 1.4495 12 6 4.0361 -2.4134 -0.6642 13 6 4.3379 -3.5571 0.0516 14 6 4.8239 -4.6735 -0.6024 15 6 5.0054 -4.6475 -1.9727 16 6 4.7002 -3.5055 -2.6888 17 6 4.2128 -2.3891 -2.0348 18 6 3.8795 -1.1441 -2.8155 19 6 5.0740 -0.1886 -2.7861 20 6 4.7410 1.0563 -3.5674 21 8 3.6591 1.1681 -4.0934 22 8 5.6465 2.0410 -3.6790 23 1 -0.4851 0.8400 -0.0004 24 1 3.7078 -0.3603 1.9213 25 1 3.5804 -2.0184 1.9349 26 1 4.1963 -3.5773 1.1221 27 1 5.0620 -5.5661 -0.0429 28 1 5.3856 -5.5198 -2.4837 29 1 4.8424 -3.4850 -3.7592 30 1 3.0130 -0.6563 -2.3691 31 1 3.6539 -1.4119 -3.8477 32 1 5.9406 -0.6764 -3.2326 33 1 5.2997 0.0794 -1.7540 34 1 5.3870 2.8201 -4.1896 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309249322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:52 Heat of formation + Delta-G solvation = -79.659378 kcal Electronic energy + Delta-G solvation = -18411.937377 eV Core-core repulsion = 15501.939983 eV Total energy + Delta-G solvation = -2909.997393 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.10336 -39.01177 -36.01539 -34.84815 -33.66263 -31.98621 -29.64753 -29.39871 -26.28591 -24.90716 -22.86554 -21.41059 -20.32466 -19.51695 -17.90094 -17.24535 -16.47685 -16.05504 -15.84149 -15.03228 -14.52581 -14.17509 -14.06682 -13.26856 -13.04096 -12.78541 -12.66245 -12.44012 -12.20623 -11.75733 -11.51396 -11.36992 -11.18117 -11.01677 -10.78580 -10.55358 -10.35485 -10.20653 -9.97293 -9.47755 -8.79029 -8.19196 -8.06256 -7.43899 -6.24693 -4.28022 1.94541 2.08520 2.43090 3.17061 3.23172 3.25201 3.27544 4.24445 4.40462 5.09138 5.17213 5.28474 5.31820 5.47249 5.54044 5.59295 5.71472 5.84006 5.95264 6.06515 6.26697 6.34462 6.48142 6.57241 6.62400 6.79195 6.92456 7.05632 7.13884 7.40786 7.49417 7.65700 8.07649 8.18914 8.31252 8.52523 8.83030 9.35801 10.87902 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.011943 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.557973 B = 2343.959492 C = 3649.769528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.082 3.918 3 Si 0.860 3.140 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.206 3.794 10 H 0.051 0.949 11 N -0.855 5.855 12 C -0.016 4.016 13 C -0.112 4.112 14 C -0.126 4.126 15 C -0.145 4.145 16 C -0.118 4.118 17 C -0.085 4.085 18 C -0.074 4.074 19 C -0.109 4.109 20 C 0.474 3.526 21 O -0.507 6.507 22 O -0.522 6.522 23 H 0.266 0.734 24 H 0.328 0.672 25 H 0.328 0.672 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.625 -1.631 -4.453 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.123 4.123 3 Si 0.686 3.314 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.582 4.582 8 H 0.093 0.907 9 C 0.097 3.903 10 H 0.069 0.931 11 N -0.383 5.383 12 C -0.017 4.017 13 C -0.130 4.130 14 C -0.144 4.144 15 C -0.164 4.164 16 C -0.136 4.136 17 C -0.086 4.086 18 C -0.112 4.112 19 C -0.147 4.147 20 C 0.316 3.684 21 O -0.394 6.394 22 O -0.334 6.334 23 H 0.077 0.923 24 H 0.140 0.860 25 H 0.139 0.861 26 H 0.138 0.862 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 12.007 -1.886 -4.679 13.024 hybrid contribution -1.012 1.503 -0.174 1.821 sum 10.995 -0.383 -4.853 12.024 Atomic orbital electron populations 1.69881 1.06293 1.27241 1.48886 1.25032 0.94697 0.98749 0.93830 0.87128 0.80621 0.84178 0.79466 1.19430 1.21219 1.18337 1.21525 0.89324 0.94833 1.52499 0.90705 1.18440 0.93743 0.91506 0.86641 0.93134 1.59671 1.66507 1.07206 1.04923 1.20009 0.92830 0.96245 0.92632 1.20934 0.99530 0.92587 0.99976 1.21031 1.00803 0.98067 0.94548 1.20860 1.03300 0.97810 0.94382 1.20883 1.00454 0.93284 0.99015 1.19451 1.00505 0.95121 0.93522 1.20451 0.97536 0.92685 1.00478 1.21455 1.01611 0.90351 1.01258 1.23737 0.81714 0.84597 0.78311 1.90738 1.23923 1.79771 1.45016 1.84551 1.47731 1.30258 1.70898 0.92345 0.86004 0.86055 0.86176 0.87127 0.87182 0.86950 0.87833 0.90864 0.87811 0.87435 0.73722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 2 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 3 Si 0.86 20.59 26.45 -169.99 -4.50 16.09 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -5.77 6.26 56.52 0.35 -5.42 16 7 C -0.54 -14.40 8.32 -34.44 -0.29 -14.69 16 8 H 0.07 2.23 8.06 -52.48 -0.42 1.81 16 9 C 0.21 4.59 1.83 -70.01 -0.13 4.46 16 10 H 0.05 1.15 3.19 -51.93 -0.17 0.98 16 11 N -0.85 -17.39 8.76 -6.65 -0.06 -17.45 16 12 C -0.02 -0.33 5.04 -104.62 -0.53 -0.86 16 13 C -0.11 -2.07 9.27 -39.59 -0.37 -2.43 16 14 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 15 C -0.15 -2.22 10.05 -39.59 -0.40 -2.62 16 16 C -0.12 -1.92 9.68 -39.58 -0.38 -2.30 16 17 C -0.09 -1.60 5.13 -104.63 -0.54 -2.13 16 18 C -0.07 -1.38 3.95 -27.89 -0.11 -1.49 16 19 C -0.11 -1.73 5.62 -27.88 -0.16 -1.89 16 20 C 0.47 7.84 8.33 36.01 0.30 8.14 16 21 O -0.51 -10.16 16.74 -18.75 -0.31 -10.47 16 22 O -0.52 -6.82 13.42 -39.26 -0.53 -7.35 16 23 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.33 6.73 7.79 -39.29 -0.31 6.42 16 25 H 0.33 6.35 7.33 -39.29 -0.29 6.06 16 26 H 0.12 2.11 6.36 -52.49 -0.33 1.78 16 27 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16 29 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 30 H 0.10 2.34 6.39 -51.93 -0.33 2.00 16 31 H 0.07 1.26 8.01 -51.93 -0.42 0.84 16 32 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.11 1.76 6.77 -51.93 -0.35 1.41 16 34 H 0.40 3.50 9.10 45.56 0.41 3.92 16 LS Contribution 286.16 15.07 4.31 4.31 Total: -1.00 -31.73 286.16 -6.47 -38.21 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -3.07 Total: 18.29 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -3.09 Total: -16.08 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.72 Total: -43.01 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.84 Total: -17.81 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.50 Total: 16.09 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.73 -6.47 -38.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309249322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.451 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds