Wall clock time and date at job start Mon Mar 30 2020 04:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 119.99852 * 2 1 4 4 H 1.48499 * 109.47235 * 264.90398 * 3 2 1 5 5 H 1.48494 * 109.47335 * 24.90775 * 3 2 1 6 6 H 1.48507 * 109.47308 * 144.90727 * 3 2 1 7 7 C 1.37874 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00231 * 2.14243 * 7 2 1 9 9 C 1.50697 * 119.99993 * 182.15070 * 7 2 1 10 10 H 1.09002 * 109.47219 * 329.88136 * 9 7 2 11 11 N 1.46904 * 109.47497 * 89.88208 * 9 7 2 12 12 C 1.50706 * 109.47206 * 209.88491 * 9 7 2 13 13 C 1.38256 * 120.00038 * 265.18408 * 12 9 7 14 14 C 1.38210 * 119.99969 * 180.20925 * 13 12 9 15 15 C 1.38257 * 119.99838 * 359.85680 * 14 13 12 16 16 C 1.38208 * 120.00462 * 359.95701 * 15 14 13 17 17 C 1.38212 * 119.99891 * 85.00197 * 12 9 7 18 18 C 1.50695 * 120.00101 * 359.97438 * 17 12 9 19 19 C 1.53000 * 109.47057 * 84.73296 * 18 17 12 20 20 C 1.50700 * 109.47496 * 179.97438 * 19 18 17 21 21 O 1.20823 * 119.99975 * 0.02562 * 20 19 18 22 22 O 1.34231 * 119.99955 * 180.02562 * 20 19 18 23 23 H 0.97004 * 120.00438 * 0.02562 * 1 2 3 24 24 H 1.00901 * 110.99991 * 293.39898 * 11 9 7 25 25 H 1.00896 * 110.99750 * 57.35575 * 11 9 7 26 26 H 1.08000 * 119.99825 * 0.04354 * 13 12 9 27 27 H 1.08002 * 119.99559 * 179.83876 * 14 13 12 28 28 H 1.08003 * 119.99386 * 179.97438 * 15 14 13 29 29 H 1.08000 * 120.00524 * 179.97438 * 16 15 14 30 30 H 1.08995 * 109.47379 * 324.73550 * 18 17 12 31 31 H 1.08999 * 109.47484 * 204.72778 * 18 17 12 32 32 H 1.09005 * 109.46867 * 59.99907 * 19 18 17 33 33 H 1.08998 * 109.47277 * 300.00199 * 19 18 17 34 34 H 0.96700 * 116.99756 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.6042 1.9842 -1.3945 5 1 1.3969 2.6813 0.5896 6 1 3.4887 1.4737 0.8049 7 6 2.0045 -1.1940 0.0005 8 1 1.4650 -2.1291 -0.0340 9 6 3.5106 -1.1945 0.0495 10 1 3.8903 -0.2964 -0.4377 11 7 3.9551 -1.2172 1.4495 12 6 4.0361 -2.4134 -0.6642 13 6 4.3379 -3.5571 0.0516 14 6 4.8239 -4.6735 -0.6024 15 6 5.0054 -4.6475 -1.9727 16 6 4.7002 -3.5055 -2.6888 17 6 4.2128 -2.3891 -2.0348 18 6 3.8795 -1.1441 -2.8155 19 6 5.0740 -0.1886 -2.7861 20 6 4.7410 1.0563 -3.5674 21 8 3.6591 1.1681 -4.0934 22 8 5.6465 2.0410 -3.6790 23 1 -0.4851 0.8400 -0.0004 24 1 3.7078 -0.3603 1.9213 25 1 3.5804 -2.0184 1.9349 26 1 4.1963 -3.5773 1.1221 27 1 5.0620 -5.5661 -0.0429 28 1 5.3856 -5.5198 -2.4837 29 1 4.8424 -3.4850 -3.7592 30 1 3.0130 -0.6563 -2.3691 31 1 3.6539 -1.4119 -3.8477 32 1 5.9406 -0.6764 -3.2326 33 1 5.2997 0.0794 -1.7540 34 1 5.3870 2.8201 -4.1896 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309249322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:52 Heat of formation + Delta-G solvation = -103.045382 kcal Electronic energy + Delta-G solvation = -18412.951470 eV Core-core repulsion = 15501.939983 eV Total energy + Delta-G solvation = -2911.011487 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.39111 -40.37826 -37.21784 -36.54004 -35.03913 -34.00942 -30.97789 -30.79208 -28.20764 -26.25330 -24.50432 -22.68086 -21.73116 -20.98484 -19.26653 -19.13707 -17.80384 -17.47601 -17.18575 -16.54050 -16.32408 -15.63674 -15.46198 -14.79961 -14.55935 -14.34253 -14.09241 -13.93504 -13.61837 -13.34910 -13.10104 -12.93955 -12.63123 -12.59146 -12.31169 -12.10376 -11.86868 -11.72651 -11.58106 -11.21849 -10.89219 -9.60239 -9.49685 -9.08426 -8.39612 -6.44737 0.62595 0.74371 1.15685 1.23721 1.26651 1.33767 2.11725 2.21767 2.96008 3.09443 3.89004 3.97090 3.98929 4.10554 4.28555 4.33727 4.46012 4.50950 4.65232 4.70481 4.75767 4.99165 5.06760 5.16711 5.33799 5.44198 5.45547 5.57799 5.75269 5.79755 6.01612 6.14140 6.33497 6.53739 6.62905 6.83811 6.94902 7.22796 8.76947 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.011943 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.557973 B = 2343.959492 C = 3649.769528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.027 3.973 3 Si 0.921 3.079 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.230 1.230 7 C -0.531 4.531 8 H 0.027 0.973 9 C 0.214 3.786 10 H 0.049 0.951 11 N -0.841 5.841 12 C -0.053 4.053 13 C -0.128 4.128 14 C -0.126 4.126 15 C -0.135 4.135 16 C -0.119 4.119 17 C -0.099 4.099 18 C -0.070 4.070 19 C -0.106 4.106 20 C 0.479 3.521 21 O -0.551 6.551 22 O -0.509 6.509 23 H 0.265 0.735 24 H 0.328 0.672 25 H 0.333 0.667 26 H 0.120 0.880 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.141 0.859 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.142 0.858 33 H 0.104 0.896 34 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.716 -2.368 -5.102 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.172 4.172 3 Si 0.746 3.254 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.153 1.153 7 C -0.570 4.570 8 H 0.045 0.955 9 C 0.104 3.896 10 H 0.066 0.934 11 N -0.369 5.369 12 C -0.054 4.054 13 C -0.146 4.146 14 C -0.144 4.144 15 C -0.153 4.153 16 C -0.136 4.136 17 C -0.099 4.099 18 C -0.107 4.107 19 C -0.143 4.143 20 C 0.323 3.677 21 O -0.442 6.442 22 O -0.323 6.323 23 H 0.074 0.926 24 H 0.139 0.861 25 H 0.145 0.855 26 H 0.138 0.862 27 H 0.159 0.841 28 H 0.166 0.834 29 H 0.159 0.841 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.159 0.841 33 H 0.122 0.878 34 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 15.150 -2.620 -5.311 16.266 hybrid contribution -1.937 1.596 -0.017 2.510 sum 13.213 -1.024 -5.328 14.283 Atomic orbital electron populations 1.70036 1.08207 1.27982 1.51670 1.25799 0.95258 1.02371 0.93794 0.86139 0.80341 0.79647 0.79312 1.20108 1.21486 1.15257 1.21716 0.91934 0.92644 1.50734 0.95481 1.18254 0.90594 0.93013 0.87694 0.93356 1.59623 1.65784 1.07445 1.04081 1.19955 0.95585 0.96176 0.93641 1.21081 1.00222 0.93059 1.00225 1.21393 0.99514 0.98116 0.95347 1.21336 1.01295 0.98522 0.94131 1.21220 0.99363 0.92520 1.00543 1.19581 1.01218 0.96115 0.93013 1.20301 0.96940 0.93178 1.00306 1.21443 1.01608 0.89972 1.01312 1.23835 0.81218 0.85173 0.77443 1.90733 1.25734 1.80696 1.47030 1.84495 1.46415 1.30534 1.70844 0.92555 0.86065 0.85470 0.86226 0.84070 0.83370 0.84092 0.92684 0.90132 0.84054 0.87812 0.71327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.46 13.96 21.45 0.30 -58.16 16 2 C 0.03 1.55 5.47 84.65 0.46 2.02 16 3 Si 0.92 43.54 26.45 68.60 1.81 45.36 16 4 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.23 -9.64 6.26 99.48 0.62 -9.01 16 7 C -0.53 -29.30 8.32 25.60 0.21 -29.09 16 8 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 9 C 0.21 9.60 1.83 43.42 0.08 9.68 16 10 H 0.05 2.18 3.19 -2.39 -0.01 2.17 16 11 N -0.84 -33.74 8.76 -174.94 -1.53 -35.27 16 12 C -0.05 -2.13 5.04 -19.86 -0.10 -2.23 16 13 C -0.13 -4.54 9.27 22.27 0.21 -4.34 16 14 C -0.13 -3.62 10.05 22.27 0.22 -3.40 16 15 C -0.14 -3.55 10.05 22.27 0.22 -3.32 16 16 C -0.12 -3.46 9.68 22.27 0.22 -3.24 16 17 C -0.10 -3.57 5.13 -19.87 -0.10 -3.67 16 18 C -0.07 -2.56 3.95 29.85 0.12 -2.44 16 19 C -0.11 -3.17 5.62 29.85 0.17 -3.00 16 20 C 0.48 15.12 8.33 71.24 0.59 15.71 16 21 O -0.55 -21.96 16.74 21.97 0.37 -21.59 16 22 O -0.51 -11.95 13.42 -51.43 -0.69 -12.64 16 23 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 24 H 0.33 13.10 7.79 -89.69 -0.70 12.40 16 25 H 0.33 12.86 7.33 -89.70 -0.66 12.20 16 26 H 0.12 4.12 6.36 -2.91 -0.02 4.10 16 27 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 28 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 29 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 30 H 0.05 2.56 6.39 -2.39 -0.02 2.54 16 31 H 0.08 2.74 8.01 -2.39 -0.02 2.72 16 32 H 0.14 3.11 8.14 -2.38 -0.02 3.09 16 33 H 0.10 3.21 6.77 -2.39 -0.02 3.20 16 34 H 0.43 6.26 9.10 -74.06 -0.67 5.58 16 Total: -1.00 -72.07 286.16 1.61 -70.46 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: -0.95 Total: 39.16 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 2.30 Total: -27.32 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -1.23 Total: -93.43 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -0.32 Total: -34.23 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.81 Total: 45.36 kcal Total: -72.07 1.61 -70.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309249322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.580 kcal (2) G-P(sol) polarization free energy of solvation -72.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds