Wall clock time and date at job start Mon Mar 30 2020 03:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.46860 * 2 1 4 4 C 1.35271 * 126.12926 * 94.98509 * 3 2 1 5 5 C 1.41786 * 104.14724 * 180.02562 * 4 3 2 6 6 N 1.32485 * 132.32625 * 179.97438 * 5 4 3 7 7 C 1.33357 * 121.04094 * 179.71475 * 6 5 4 8 8 N 1.38339 * 120.24152 * 180.30739 * 7 6 5 9 9 C 1.36927 * 119.99602 * 0.25386 * 8 7 6 10 10 H 1.08002 * 120.00251 * 0.02562 * 9 8 7 11 11 C 1.38881 * 119.99661 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00124 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99827 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47595 * 60.00125 * 13 11 9 15 15 H 1.48501 * 109.47240 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47064 * 300.00008 * 13 11 9 17 17 C 1.39143 * 119.52132 * 0.56114 * 7 6 5 18 18 C 1.39524 * 118.97861 * 359.46922 * 17 7 6 19 19 O 1.22193 * 120.41127 * 180.27590 * 18 17 7 20 20 N 1.35284 * 119.17598 * 0.24932 * 18 17 7 21 21 O 1.21453 * 130.66908 * 180.02562 * 20 18 17 22 22 H 1.09003 * 109.46917 * 299.99550 * 1 2 3 23 23 H 1.08997 * 109.47056 * 59.99784 * 1 2 3 24 24 H 1.08999 * 109.46855 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47216 * 240.00456 * 2 1 3 26 26 H 1.08995 * 109.47369 * 119.99512 * 2 1 3 27 27 H 1.07998 * 127.93003 * 0.02562 * 4 3 2 28 28 H 0.96991 * 120.00434 * 180.25557 * 8 7 6 29 29 H 0.96999 * 120.00054 * 179.97438 * 12 11 9 30 30 H 1.08002 * 120.51524 * 179.74827 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3876 2.1412 1.0884 5 6 2.7818 3.3964 0.5598 6 7 3.2261 4.5056 1.1320 7 6 3.5427 5.5763 0.4028 8 7 4.0111 6.7239 1.0171 9 6 4.1561 6.7614 2.3782 10 1 3.9051 5.8950 2.9721 11 6 4.6268 7.9133 2.9948 12 7 4.9329 8.9682 2.2716 13 14 4.8253 7.9643 4.8515 14 1 5.7841 6.9128 5.2760 15 1 5.3394 9.2968 5.2580 16 1 3.5095 7.7241 5.4967 17 6 3.3934 5.5327 -0.9799 18 6 2.9244 4.3599 -1.5725 19 8 2.7882 4.2911 -2.7849 20 7 2.6228 3.2996 -0.7882 21 8 2.2067 2.1954 -1.0757 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 2.3742 1.8313 2.1229 28 1 4.2368 7.5019 0.4837 29 1 5.2614 9.7729 2.7023 30 1 3.6411 6.3919 -1.5856 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309974727.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:48 Heat of formation + Delta-G solvation = 58.076708 kcal Electronic energy + Delta-G solvation = -17610.937654 eV Core-core repulsion = 14603.372602 eV Total energy + Delta-G solvation = -3007.565052 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.50235 -40.87414 -38.99325 -37.09539 -36.14862 -34.37167 -32.78060 -32.18819 -30.54688 -27.19642 -25.80819 -24.76834 -23.76230 -23.00931 -20.67624 -19.78564 -19.53261 -18.66059 -17.80026 -16.73497 -16.37692 -15.84955 -15.60757 -15.40050 -15.35880 -14.88558 -14.69034 -14.55504 -14.29112 -13.60008 -13.48458 -13.16515 -12.62470 -12.54456 -12.41408 -12.13730 -11.93148 -11.41801 -11.09216 -10.98766 -10.77815 -9.59416 -8.90948 -8.68624 -5.95823 -0.42797 0.49895 0.55667 1.32966 1.43771 1.53001 1.56376 2.18094 2.27541 2.54822 2.61562 3.15888 3.27918 3.68839 3.77976 4.25917 4.27650 4.31797 4.57790 4.68590 4.80705 4.89831 5.04718 5.06494 5.14858 5.30497 5.42292 5.53510 5.68819 6.18829 6.47060 6.77534 7.08232 7.25639 7.49971 8.46608 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.029872 B = 0.005845 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.122935 B = 4789.184462 C = 5632.342168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.041 4.041 3 C 0.097 3.903 4 C -0.226 4.226 5 C 0.353 3.647 6 N -0.557 5.557 7 C 0.394 3.606 8 N -0.499 5.499 9 C -0.316 4.316 10 H 0.118 0.882 11 C -0.016 4.016 12 N -0.907 5.907 13 Si 1.012 2.988 14 H -0.261 1.261 15 H -0.276 1.276 16 H -0.261 1.261 17 C -0.475 4.475 18 C 0.531 3.469 19 O -0.618 6.618 20 N -0.401 5.401 21 O -0.026 6.026 22 H 0.066 0.934 23 H 0.042 0.958 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.150 0.850 27 H 0.229 0.771 28 H 0.409 0.591 29 H 0.287 0.713 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.112 -17.121 4.506 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.079 4.079 3 C 0.041 3.959 4 C -0.248 4.248 5 C 0.101 3.899 6 N -0.294 5.294 7 C 0.150 3.850 8 N -0.101 5.101 9 C -0.446 4.446 10 H 0.136 0.864 11 C -0.219 4.219 12 N -0.542 5.542 13 Si 0.833 3.167 14 H -0.186 1.186 15 H -0.200 1.200 16 H -0.186 1.186 17 C -0.508 4.508 18 C 0.350 3.650 19 O -0.507 6.507 20 N -0.154 5.154 21 O -0.031 6.031 22 H 0.085 0.915 23 H 0.062 0.938 24 H 0.119 0.881 25 H 0.127 0.873 26 H 0.168 0.832 27 H 0.246 0.754 28 H 0.246 0.754 29 H 0.096 0.904 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.909 -16.502 4.381 18.067 hybrid contribution 0.356 1.247 -0.707 1.477 sum -5.554 -15.254 3.674 16.644 Atomic orbital electron populations 1.21861 0.92249 1.04581 1.02456 1.20817 0.97347 0.81494 1.08219 1.25109 0.92930 0.95823 0.82001 1.21801 1.12027 0.88012 1.03009 1.22324 0.92316 0.95956 0.79299 1.67431 1.27955 0.98919 1.35056 1.18003 0.92595 0.86641 0.87777 1.41006 1.51409 1.09681 1.08007 1.20350 1.41044 1.01487 0.81722 0.86449 1.26521 0.95069 0.93817 1.06471 1.69737 1.40934 1.04179 1.39380 0.84685 0.79481 0.78031 0.74462 1.18557 1.20047 1.18587 1.20720 1.36791 0.99848 0.93424 1.16718 0.81759 0.80455 0.86116 1.90810 1.63366 1.82055 1.14479 1.45280 1.54402 1.04425 1.11288 1.84156 1.71781 1.12799 1.34394 0.91527 0.93848 0.88073 0.87300 0.83176 0.75447 0.75402 0.90378 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 71.98 0.71 -0.69 16 2 C -0.04 -0.39 6.48 29.85 0.19 -0.20 16 3 C 0.10 2.17 6.66 25.00 0.17 2.34 16 4 C -0.23 -5.70 11.07 22.46 0.25 -5.45 16 5 C 0.35 13.92 7.94 134.67 1.07 14.98 16 6 N -0.56 -25.80 9.24 -190.46 -1.76 -27.56 16 7 C 0.39 19.85 7.44 133.00 0.99 20.84 16 8 N -0.50 -25.82 5.40 -189.00 -1.02 -26.84 16 9 C -0.32 -16.25 9.71 84.05 0.82 -15.43 16 10 H 0.12 5.95 7.09 -2.91 -0.02 5.93 16 11 C -0.02 -0.78 5.50 84.89 0.47 -0.31 16 12 N -0.91 -46.81 13.05 21.66 0.28 -46.53 16 13 Si 1.01 38.34 29.55 68.60 2.03 40.37 16 14 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 15 H -0.28 -10.13 7.11 99.48 0.71 -9.42 16 16 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 17 C -0.47 -24.22 9.91 22.80 0.23 -23.99 16 18 C 0.53 27.14 7.64 84.47 0.65 27.79 16 19 O -0.62 -34.78 17.88 7.28 0.13 -34.65 16 20 N -0.40 -17.16 3.48 -317.41 -1.10 -18.27 16 21 O -0.03 -0.90 10.95 87.38 0.96 0.06 16 22 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.23 3.72 8.06 -2.91 -0.02 3.69 16 28 H 0.41 21.28 7.89 -92.71 -0.73 20.55 16 29 H 0.29 13.77 8.31 -92.71 -0.77 13.00 16 30 H 0.14 6.81 8.06 -2.91 -0.02 6.79 16 Total: -1.00 -73.47 273.25 5.50 -67.97 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.45 Total: 25.56 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 5.53 Total: 19.89 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -3.60 Total: -119.19 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: 1.09 Total: -34.59 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -73.47 5.50 -67.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309974727.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.043 kcal (2) G-P(sol) polarization free energy of solvation -73.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds